Wall clock time and date at job start Tue Mar 31 2020 06:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47181 * 2 1 4 4 C 1.50698 * 109.46990 * 240.00249 * 2 1 3 5 5 H 1.08000 * 120.00230 * 240.00505 * 4 2 1 6 6 C 1.37880 * 120.00310 * 59.99733 * 4 2 1 7 7 N 1.31515 * 119.99595 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00146 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46860 * 60.00469 * 8 6 4 10 10 H 1.48500 * 109.46955 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47413 * 300.00272 * 8 6 4 12 12 S 1.81392 * 109.47295 * 120.00088 * 2 1 3 13 13 C 1.76192 * 103.00362 * 187.56039 * 12 2 1 14 14 C 1.38786 * 120.10041 * 6.01144 * 13 12 2 15 15 C 1.38205 * 119.98397 * 180.29574 * 14 13 12 16 16 C 1.38292 * 120.20252 * 359.70534 * 15 14 13 17 17 C 1.38267 * 120.20260 * 359.97438 * 16 15 14 18 18 C 1.38636 * 120.00770 * 0.02562 * 17 16 15 19 19 N 1.40195 * 120.09309 * 179.97438 * 18 17 16 20 20 C 1.34776 * 120.00202 * 33.98164 * 19 18 17 21 21 O 1.21597 * 119.99540 * 355.11222 * 20 19 18 22 22 N 1.34766 * 120.00038 * 175.11030 * 20 19 18 23 23 C 1.49667 * 126.06521 * 359.97438 * 22 20 19 24 24 C 1.50988 * 102.24799 * 205.23895 * 23 22 20 25 25 H 1.09000 * 109.99472 * 69.67547 * 24 23 22 26 26 C 1.50515 * 125.31214 * 204.61059 * 24 23 22 27 27 C 1.56127 * 103.94130 * 145.30452 * 26 24 23 28 28 C 1.56511 * 105.67641 * 352.58414 * 27 26 24 29 29 C 1.51447 * 101.22432 * 333.99921 * 28 27 26 30 30 H 1.08992 * 110.50247 * 291.79713 * 29 28 27 31 31 C 1.49175 * 126.06479 * 180.02562 * 22 20 19 32 32 H 1.08996 * 109.47255 * 184.73178 * 1 2 3 33 33 H 1.09008 * 109.46998 * 304.73086 * 1 2 3 34 34 H 1.08997 * 109.47071 * 64.73001 * 1 2 3 35 35 H 0.97002 * 119.99580 * 180.02562 * 7 6 4 36 36 H 1.07992 * 120.00826 * 0.04565 * 14 13 12 37 37 H 1.08004 * 119.90360 * 179.72228 * 15 14 13 38 38 H 1.07999 * 119.90123 * 180.02562 * 16 15 14 39 39 H 1.07997 * 119.99624 * 180.02562 * 17 16 15 40 40 H 0.96999 * 119.99640 * 213.98661 * 19 18 17 41 41 H 1.09004 * 110.85082 * 87.05329 * 23 22 20 42 42 H 1.08998 * 110.84684 * 323.42748 * 23 22 20 43 43 H 1.09006 * 110.53368 * 26.69436 * 26 24 23 44 44 H 1.09002 * 110.53973 * 263.92199 * 26 24 23 45 45 H 1.08999 * 110.22075 * 111.65926 * 27 26 24 46 46 H 1.08993 * 110.22570 * 233.50986 * 27 26 24 47 47 H 1.09002 * 111.05867 * 91.94982 * 28 27 26 48 48 H 1.08999 * 111.05812 * 215.94157 * 28 27 26 49 49 H 1.08998 * 110.35896 * 68.32186 * 31 22 20 50 50 H 1.09003 * 110.44716 * 306.08054 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8256 -2.5202 -4.0078 10 1 1.8258 -0.4205 -5.2204 11 1 3.8062 -1.1209 -4.0083 12 16 2.1347 -0.8551 1.4810 13 6 3.8713 -0.5627 1.4264 14 6 4.4050 0.2815 0.4627 15 6 5.7683 0.5043 0.4182 16 6 6.6034 -0.1069 1.3355 17 6 6.0796 -0.9442 2.3031 18 6 4.7134 -1.1738 2.3556 19 7 4.1804 -2.0229 3.3356 20 6 4.7434 -2.0770 4.5590 21 8 5.7650 -1.4578 4.7860 22 7 4.1740 -2.8171 5.5306 23 6 2.9228 -3.6282 5.4016 24 6 2.4290 -3.6844 6.8274 25 1 2.0801 -2.7002 7.1400 26 6 1.5381 -4.7549 7.3980 27 6 2.0335 -4.9114 8.8703 28 6 3.3236 -4.0318 8.9781 29 6 3.7985 -4.0276 7.5400 30 1 4.1391 -5.0208 7.2475 31 6 4.6784 -2.9725 6.9259 32 1 -0.3633 -1.0241 0.0848 33 1 -0.3633 0.5855 0.8446 34 1 -0.3633 0.4387 -0.9293 35 1 0.7088 1.1614 -3.4844 36 1 3.7557 0.7609 -0.2547 37 1 6.1827 1.1580 -0.3351 38 1 7.6680 0.0710 1.2965 39 1 6.7349 -1.4194 3.0181 40 1 3.4066 -2.5715 3.1332 41 1 3.1452 -4.6280 5.0285 42 1 2.1991 -3.1256 4.7600 43 1 1.6643 -5.6892 6.8508 44 1 0.4959 -4.4364 7.3771 45 1 1.2734 -4.5518 9.5638 46 1 2.2703 -5.9546 9.0793 47 1 3.0830 -3.0231 9.3138 48 1 4.0603 -4.4958 9.6339 49 1 4.5816 -2.0335 7.4709 50 1 5.7176 -3.3016 6.9207 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123441155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:25 Heat of formation + Delta-G solvation = 9.943826 kcal Electronic energy + Delta-G solvation = -29881.105198 eV Core-core repulsion = 25999.497683 eV Total energy + Delta-G solvation = -3881.607515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.01162 -39.69628 -37.91423 -35.12008 -34.56720 -34.07054 -30.76183 -30.63175 -30.17106 -30.05138 -28.35002 -26.53194 -25.40101 -23.93162 -22.51173 -22.24483 -21.10283 -20.55928 -20.21830 -19.73106 -18.09213 -17.32226 -16.63766 -16.43270 -16.15358 -15.58323 -15.18968 -15.12484 -15.03638 -14.51635 -14.31012 -14.10808 -13.93123 -13.45550 -13.28929 -13.01790 -12.84758 -12.74459 -12.65232 -12.26475 -11.90100 -11.76925 -11.59758 -11.58426 -11.52845 -11.29128 -11.10198 -11.00745 -10.88716 -10.83182 -10.55876 -10.42122 -10.41800 -10.24451 -10.03382 -9.68357 -9.44211 -9.04185 -8.94795 -8.81811 -8.50146 -7.77839 -6.55677 -6.14545 -4.30929 1.76069 1.97266 2.39089 2.64450 3.23300 3.24380 3.27688 3.30937 3.52705 3.61150 3.92355 4.30052 4.30566 4.33813 4.40840 4.62797 4.79944 4.92432 4.96097 5.09690 5.10212 5.21417 5.26876 5.35668 5.39570 5.48433 5.55756 5.57992 5.59649 5.64435 5.67013 5.73863 5.79981 5.92765 5.98848 6.02602 6.04218 6.13385 6.46736 6.54109 6.66272 6.69671 6.78372 6.80149 7.00021 7.08724 7.12894 7.26157 7.53956 7.56460 7.76372 7.93263 7.99723 8.59896 8.70104 9.34260 10.82994 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.013169 B = 0.002661 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.657995 B =10519.697847 C =11949.172600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.098 3.902 3 H 0.051 0.949 4 C -0.518 4.518 5 H 0.066 0.934 6 C 0.070 3.930 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.274 1.274 12 S -0.197 6.197 13 C -0.077 4.077 14 C -0.094 4.094 15 C -0.124 4.124 16 C -0.123 4.123 17 C -0.115 4.115 18 C 0.161 3.839 19 N -0.673 5.673 20 C 0.725 3.275 21 O -0.576 6.576 22 N -0.643 5.643 23 C 0.113 3.887 24 C -0.121 4.121 25 H 0.085 0.915 26 C -0.103 4.103 27 C -0.122 4.122 28 C -0.101 4.101 29 C -0.126 4.126 30 H 0.085 0.915 31 C 0.148 3.852 32 H 0.036 0.964 33 H 0.020 0.980 34 H 0.103 0.897 35 H 0.266 0.734 36 H 0.149 0.851 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.137 0.863 40 H 0.407 0.593 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.068 0.932 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.105 -9.657 18.977 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.030 4.030 3 H 0.069 0.931 4 C -0.557 4.557 5 H 0.084 0.916 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.725 3.275 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.199 1.199 12 S 0.049 5.951 13 C -0.192 4.192 14 C -0.118 4.118 15 C -0.145 4.145 16 C -0.145 4.145 17 C -0.137 4.137 18 C 0.061 3.939 19 N -0.320 5.320 20 C 0.428 3.572 21 O -0.454 6.454 22 N -0.382 5.382 23 C -0.009 4.009 24 C -0.141 4.141 25 H 0.103 0.897 26 C -0.141 4.141 27 C -0.160 4.160 28 C -0.139 4.139 29 C -0.145 4.145 30 H 0.104 0.896 31 C 0.026 3.974 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.167 0.833 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.155 0.845 40 H 0.244 0.756 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.086 0.914 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.988 -9.656 19.779 22.212 hybrid contribution 0.573 -0.040 -2.017 2.098 sum 3.560 -9.696 17.762 20.547 Atomic orbital electron populations 1.21656 0.95180 0.99662 1.02210 1.21085 0.95861 0.96768 0.89238 0.93095 1.21217 1.32161 1.13042 0.89295 0.91569 1.24955 0.94667 0.94852 0.98940 1.69840 1.35936 1.22531 1.24165 0.86544 0.79476 0.79829 0.81685 1.20035 1.21144 1.19918 1.84486 0.98518 1.72722 1.39365 1.21435 0.97057 1.00692 1.00033 1.21459 0.95841 0.97080 0.97399 1.21048 0.93435 1.00786 0.99181 1.20925 0.99267 0.98578 0.95694 1.21067 0.92889 1.00557 0.99157 1.16986 0.91599 0.94786 0.90554 1.42548 1.34594 1.44875 1.09997 1.15335 0.82874 0.79455 0.79566 1.90901 1.24560 1.48675 1.81251 1.48785 1.27492 1.50746 1.11226 1.21648 0.86115 0.95976 0.97141 1.22286 0.95997 1.00912 0.94872 0.89651 1.21559 0.98907 0.98173 0.95505 1.23013 0.96782 0.99994 0.96211 1.21881 0.96932 1.00673 0.94454 1.22424 0.95773 0.99550 0.96759 0.89644 1.20962 0.97572 0.98467 0.80438 0.94527 0.96063 0.87863 0.92432 0.83312 0.86359 0.86465 0.84536 0.75579 0.90876 0.90066 0.91171 0.91113 0.91419 0.91411 0.90960 0.91169 0.91399 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 9.04 37.16 0.34 -2.57 16 2 C 0.10 2.32 2.01 -27.88 -0.06 2.27 16 3 H 0.05 1.30 7.01 -51.92 -0.36 0.94 16 4 C -0.52 -13.23 6.89 -34.44 -0.24 -13.47 16 5 H 0.07 1.75 7.71 -52.49 -0.40 1.34 16 6 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 7 N -0.89 -23.52 11.30 55.43 0.63 -22.90 16 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 S -0.20 -4.10 20.11 -107.50 -2.16 -6.26 16 13 C -0.08 -1.58 6.04 -38.91 -0.24 -1.82 16 14 C -0.09 -1.94 8.79 -39.39 -0.35 -2.29 16 15 C -0.12 -2.23 10.04 -39.57 -0.40 -2.63 16 16 C -0.12 -2.09 10.04 -39.55 -0.40 -2.49 16 17 C -0.11 -2.11 8.71 -39.42 -0.34 -2.45 16 18 C 0.16 3.09 6.33 -83.41 -0.53 2.56 16 19 N -0.67 -11.28 5.00 -14.06 -0.07 -11.35 16 20 C 0.72 11.93 8.38 -86.93 -0.73 11.20 16 21 O -0.58 -11.15 14.07 5.28 0.07 -11.08 16 22 N -0.64 -8.06 3.42 -177.22 -0.61 -8.67 16 23 C 0.11 1.09 6.42 -3.29 -0.02 1.07 16 24 C -0.12 -0.94 2.83 -90.04 -0.26 -1.20 16 25 H 0.09 0.75 8.13 -51.93 -0.42 0.32 16 26 C -0.10 -0.62 6.70 -26.30 -0.18 -0.80 16 27 C -0.12 -0.64 6.95 -23.17 -0.16 -0.80 16 28 C -0.10 -0.59 6.71 -25.63 -0.17 -0.76 16 29 C -0.13 -0.92 2.83 -89.83 -0.25 -1.18 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 C 0.15 1.50 6.77 -3.81 -0.03 1.48 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.10 2.56 5.96 -51.93 -0.31 2.25 16 35 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.15 3.38 5.10 -52.49 -0.27 3.11 16 37 H 0.12 1.86 8.06 -52.48 -0.42 1.43 16 38 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.14 2.51 6.13 -52.49 -0.32 2.19 16 40 H 0.41 6.26 6.54 -40.82 -0.27 5.99 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.82 7.45 -51.93 -0.39 0.43 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 401.66 15.07 6.05 6.05 Total: -1.00 -28.96 401.66 -13.00 -41.95 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -7.80 Total: 9.00 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -4.09 Total: -12.17 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.05 Total: -42.91 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.07 Total: -11.08 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: -4.10 SS G_CDS: -2.16 Total: -6.26 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -28.96 -13.00 -41.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123441155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.899 kcal (2) G-P(sol) polarization free energy of solvation -28.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds