Wall clock time and date at job start Tue Mar 31 2020 06:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47181 * 2 1 4 4 C 1.50698 * 109.46990 * 240.00249 * 2 1 3 5 5 H 1.08000 * 120.00230 * 240.00505 * 4 2 1 6 6 C 1.37880 * 120.00310 * 59.99733 * 4 2 1 7 7 N 1.31515 * 119.99595 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00146 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46860 * 60.00469 * 8 6 4 10 10 H 1.48500 * 109.46955 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47413 * 300.00272 * 8 6 4 12 12 S 1.81392 * 109.47295 * 120.00088 * 2 1 3 13 13 C 1.76192 * 103.00362 * 187.56039 * 12 2 1 14 14 C 1.38786 * 120.10041 * 6.01144 * 13 12 2 15 15 C 1.38205 * 119.98397 * 180.29574 * 14 13 12 16 16 C 1.38292 * 120.20252 * 359.70534 * 15 14 13 17 17 C 1.38267 * 120.20260 * 359.97438 * 16 15 14 18 18 C 1.38636 * 120.00770 * 0.02562 * 17 16 15 19 19 N 1.40195 * 120.09309 * 179.97438 * 18 17 16 20 20 C 1.34776 * 120.00202 * 33.98164 * 19 18 17 21 21 O 1.21597 * 119.99540 * 355.11222 * 20 19 18 22 22 N 1.34766 * 120.00038 * 175.11030 * 20 19 18 23 23 C 1.49667 * 126.06521 * 359.97438 * 22 20 19 24 24 C 1.50988 * 102.24799 * 205.23895 * 23 22 20 25 25 H 1.09000 * 109.99472 * 69.67547 * 24 23 22 26 26 C 1.50515 * 125.31214 * 204.61059 * 24 23 22 27 27 C 1.56127 * 103.94130 * 145.30452 * 26 24 23 28 28 C 1.56511 * 105.67641 * 352.58414 * 27 26 24 29 29 C 1.51447 * 101.22432 * 333.99921 * 28 27 26 30 30 H 1.08992 * 110.50247 * 291.79713 * 29 28 27 31 31 C 1.49175 * 126.06479 * 180.02562 * 22 20 19 32 32 H 1.08996 * 109.47255 * 184.73178 * 1 2 3 33 33 H 1.09008 * 109.46998 * 304.73086 * 1 2 3 34 34 H 1.08997 * 109.47071 * 64.73001 * 1 2 3 35 35 H 0.97002 * 119.99580 * 180.02562 * 7 6 4 36 36 H 1.07992 * 120.00826 * 0.04565 * 14 13 12 37 37 H 1.08004 * 119.90360 * 179.72228 * 15 14 13 38 38 H 1.07999 * 119.90123 * 180.02562 * 16 15 14 39 39 H 1.07997 * 119.99624 * 180.02562 * 17 16 15 40 40 H 0.96999 * 119.99640 * 213.98661 * 19 18 17 41 41 H 1.09004 * 110.85082 * 87.05329 * 23 22 20 42 42 H 1.08998 * 110.84684 * 323.42748 * 23 22 20 43 43 H 1.09006 * 110.53368 * 26.69436 * 26 24 23 44 44 H 1.09002 * 110.53973 * 263.92199 * 26 24 23 45 45 H 1.08999 * 110.22075 * 111.65926 * 27 26 24 46 46 H 1.08993 * 110.22570 * 233.50986 * 27 26 24 47 47 H 1.09002 * 111.05867 * 91.94982 * 28 27 26 48 48 H 1.08999 * 111.05812 * 215.94157 * 28 27 26 49 49 H 1.08998 * 110.35896 * 68.32186 * 31 22 20 50 50 H 1.09003 * 110.44716 * 306.08054 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8256 -2.5202 -4.0078 10 1 1.8258 -0.4205 -5.2204 11 1 3.8062 -1.1209 -4.0083 12 16 2.1347 -0.8551 1.4810 13 6 3.8713 -0.5627 1.4264 14 6 4.4050 0.2815 0.4627 15 6 5.7683 0.5043 0.4182 16 6 6.6034 -0.1069 1.3355 17 6 6.0796 -0.9442 2.3031 18 6 4.7134 -1.1738 2.3556 19 7 4.1804 -2.0229 3.3356 20 6 4.7434 -2.0770 4.5590 21 8 5.7650 -1.4578 4.7860 22 7 4.1740 -2.8171 5.5306 23 6 2.9228 -3.6282 5.4016 24 6 2.4290 -3.6844 6.8274 25 1 2.0801 -2.7002 7.1400 26 6 1.5381 -4.7549 7.3980 27 6 2.0335 -4.9114 8.8703 28 6 3.3236 -4.0318 8.9781 29 6 3.7985 -4.0276 7.5400 30 1 4.1391 -5.0208 7.2475 31 6 4.6784 -2.9725 6.9259 32 1 -0.3633 -1.0241 0.0848 33 1 -0.3633 0.5855 0.8446 34 1 -0.3633 0.4387 -0.9293 35 1 0.7088 1.1614 -3.4844 36 1 3.7557 0.7609 -0.2547 37 1 6.1827 1.1580 -0.3351 38 1 7.6680 0.0710 1.2965 39 1 6.7349 -1.4194 3.0181 40 1 3.4066 -2.5715 3.1332 41 1 3.1452 -4.6280 5.0285 42 1 2.1991 -3.1256 4.7600 43 1 1.6643 -5.6892 6.8508 44 1 0.4959 -4.4364 7.3771 45 1 1.2734 -4.5518 9.5638 46 1 2.2703 -5.9546 9.0793 47 1 3.0830 -3.0231 9.3138 48 1 4.0603 -4.4958 9.6339 49 1 4.5816 -2.0335 7.4709 50 1 5.7176 -3.3016 6.9207 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123441155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:23 Heat of formation + Delta-G solvation = -2.523491 kcal Electronic energy + Delta-G solvation = -29881.645821 eV Core-core repulsion = 25999.497683 eV Total energy + Delta-G solvation = -3882.148138 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.00886 -40.77244 -39.25107 -36.24234 -36.00441 -35.68033 -32.44140 -31.80976 -31.50836 -31.04750 -29.47641 -27.36255 -27.18815 -24.90033 -23.92238 -23.78308 -22.67397 -21.27999 -21.01512 -20.72601 -19.31288 -18.56762 -18.45316 -17.93377 -17.30298 -16.96682 -16.58760 -16.23555 -15.96309 -15.64423 -15.57301 -15.21936 -14.99271 -14.97386 -14.83600 -14.63471 -13.96380 -13.88580 -13.52272 -13.40577 -13.37755 -13.17543 -12.92550 -12.86519 -12.61214 -12.47134 -12.37103 -12.27710 -12.10843 -12.01678 -11.85329 -11.70829 -11.47040 -11.34673 -11.27670 -11.08005 -10.99832 -10.88286 -10.56264 -10.40145 -9.89011 -9.21441 -8.31631 -7.98518 -6.33927 0.29401 0.46157 0.92117 1.34722 1.41643 1.42368 1.49381 1.84663 1.96152 2.40137 2.68176 2.86152 2.96753 3.09970 3.72003 3.77755 4.01369 4.03101 4.19994 4.23122 4.27671 4.34545 4.39502 4.50081 4.53322 4.55390 4.59462 4.63752 4.66976 4.73511 4.82002 4.83628 4.87926 4.90420 4.93113 5.02035 5.09019 5.13337 5.22638 5.27831 5.31502 5.32845 5.36183 5.46533 5.53873 5.55148 5.60686 5.64903 5.78361 5.86011 6.05921 6.08997 6.68043 6.70004 7.31991 7.33008 8.84700 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.013169 B = 0.002661 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.657995 B =10519.697847 C =11949.172600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.093 3.907 3 H 0.025 0.975 4 C -0.522 4.522 5 H 0.054 0.946 6 C 0.030 3.970 7 N -0.909 5.909 8 Si 0.951 3.049 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.274 1.274 12 S -0.174 6.174 13 C -0.102 4.102 14 C -0.112 4.112 15 C -0.125 4.125 16 C -0.108 4.108 17 C -0.122 4.122 18 C 0.159 3.841 19 N -0.671 5.671 20 C 0.719 3.281 21 O -0.610 6.610 22 N -0.640 5.640 23 C 0.109 3.891 24 C -0.117 4.117 25 H 0.074 0.926 26 C -0.101 4.101 27 C -0.118 4.118 28 C -0.099 4.099 29 C -0.115 4.115 30 H 0.094 0.906 31 C 0.142 3.858 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.082 0.918 35 H 0.267 0.733 36 H 0.123 0.877 37 H 0.142 0.858 38 H 0.155 0.845 39 H 0.139 0.861 40 H 0.412 0.588 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.082 0.918 49 H 0.062 0.938 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.812 -11.365 20.228 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.035 4.035 3 H 0.043 0.957 4 C -0.561 4.561 5 H 0.072 0.928 6 C -0.171 4.171 7 N -0.547 5.547 8 Si 0.776 3.224 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.199 1.199 12 S 0.071 5.929 13 C -0.218 4.218 14 C -0.136 4.136 15 C -0.146 4.146 16 C -0.129 4.129 17 C -0.144 4.144 18 C 0.058 3.942 19 N -0.318 5.318 20 C 0.422 3.578 21 O -0.490 6.490 22 N -0.378 5.378 23 C -0.012 4.012 24 C -0.136 4.136 25 H 0.092 0.908 26 C -0.139 4.139 27 C -0.155 4.155 28 C -0.137 4.137 29 C -0.134 4.134 30 H 0.112 0.888 31 C 0.021 3.979 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.141 0.859 37 H 0.160 0.840 38 H 0.172 0.828 39 H 0.156 0.844 40 H 0.250 0.750 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.100 0.900 49 H 0.080 0.920 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.671 -11.397 21.066 24.232 hybrid contribution 0.433 0.496 -2.308 2.400 sum 4.104 -10.902 18.758 22.081 Atomic orbital electron populations 1.21515 0.94599 0.99920 1.01811 1.20894 0.96426 0.95660 0.90524 0.95698 1.21267 1.31913 1.12599 0.90286 0.92781 1.25580 0.94871 0.95443 1.01239 1.69940 1.36706 1.23465 1.24621 0.85706 0.78836 0.78893 0.78916 1.19760 1.20648 1.19880 1.84147 0.99197 1.72389 1.37153 1.21521 0.96874 1.02095 1.01287 1.21358 0.96954 0.97829 0.97481 1.21303 0.92340 1.00975 0.99933 1.21309 1.00971 0.96654 0.94014 1.21254 0.92565 1.00973 0.99568 1.17118 0.91921 0.94706 0.90505 1.42499 1.34738 1.44614 1.09981 1.15486 0.82703 0.79757 0.79858 1.90860 1.26072 1.50264 1.81822 1.48929 1.28057 1.49650 1.11200 1.21850 0.84794 0.96064 0.98531 1.22244 0.96744 1.01160 0.93455 0.90803 1.21582 0.98608 0.97678 0.96000 1.22999 0.96433 1.00507 0.95593 1.21912 0.97512 1.00919 0.93340 1.22388 0.94520 0.98699 0.97795 0.88817 1.21131 0.98136 0.99281 0.79339 0.94148 0.94466 0.89935 0.92411 0.85942 0.83978 0.82772 0.84365 0.75003 0.89272 0.90740 0.90395 0.90866 0.90795 0.90304 0.91265 0.89962 0.91998 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 9.04 71.98 0.65 -4.85 16 2 C 0.09 4.53 2.01 29.85 0.06 4.59 16 3 H 0.03 1.34 7.01 -2.39 -0.02 1.32 16 4 C -0.52 -27.18 6.89 25.60 0.18 -27.01 16 5 H 0.05 2.90 7.71 -2.91 -0.02 2.88 16 6 C 0.03 1.58 5.29 84.66 0.45 2.03 16 7 N -0.91 -49.08 11.30 21.45 0.24 -48.84 16 8 Si 0.95 42.03 29.54 68.60 2.03 44.05 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 S -0.17 -7.36 20.11 -56.49 -1.14 -8.50 16 13 C -0.10 -4.28 6.04 22.71 0.14 -4.14 16 14 C -0.11 -4.73 8.79 22.39 0.20 -4.53 16 15 C -0.13 -4.38 10.04 22.27 0.22 -4.16 16 16 C -0.11 -3.47 10.04 22.29 0.22 -3.25 16 17 C -0.12 -4.36 8.71 22.37 0.19 -4.16 16 18 C 0.16 6.07 6.33 38.20 0.24 6.31 16 19 N -0.67 -22.45 5.00 -316.67 -1.58 -24.03 16 20 C 0.72 23.59 8.38 179.06 1.50 25.09 16 21 O -0.61 -23.62 14.07 -4.02 -0.06 -23.68 16 22 N -0.64 -15.70 3.42 -832.87 -2.85 -18.55 16 23 C 0.11 1.96 6.42 85.11 0.55 2.51 16 24 C -0.12 -1.62 2.83 -10.42 -0.03 -1.65 16 25 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 26 C -0.10 -0.97 6.70 30.88 0.21 -0.76 16 27 C -0.12 -0.90 6.95 32.90 0.23 -0.67 16 28 C -0.10 -0.91 6.71 31.31 0.21 -0.70 16 29 C -0.12 -1.47 2.83 -10.28 -0.03 -1.50 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 C 0.14 2.79 6.77 85.05 0.58 3.37 16 32 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.08 4.19 5.96 -2.39 -0.01 4.17 16 35 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 36 H 0.12 5.81 5.10 -2.91 -0.01 5.79 16 37 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 38 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 39 H 0.14 4.96 6.13 -2.91 -0.02 4.94 16 40 H 0.41 12.63 6.54 -92.71 -0.61 12.02 16 41 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.45 7.45 -2.39 -0.02 1.44 16 43 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 45 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -63.10 401.66 2.74 -60.36 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.34 Total: 32.67 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 5.76 Total: -13.49 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -4.19 Total: -91.42 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.06 Total: -23.68 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: -7.36 SS G_CDS: -1.14 Total: -8.50 kcal Total: -63.10 2.74 -60.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123441155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.837 kcal (2) G-P(sol) polarization free energy of solvation -63.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds