Wall clock time and date at job start Tue Mar 31 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47073 * 2 1 4 4 C 1.50703 * 109.47270 * 239.99782 * 2 1 3 5 5 H 1.07997 * 120.00174 * 245.70005 * 4 2 1 6 6 C 1.37884 * 119.99725 * 65.69734 * 4 2 1 7 7 N 1.31507 * 120.00067 * 197.73941 * 6 4 2 8 8 Si 1.86801 * 119.99995 * 18.01405 * 6 4 2 9 9 H 1.48495 * 109.46946 * 179.72729 * 8 6 4 10 10 H 1.48500 * 109.46896 * 299.72393 * 8 6 4 11 11 H 1.48494 * 109.47335 * 59.72071 * 8 6 4 12 12 N 1.46499 * 109.47544 * 120.00017 * 2 1 3 13 13 C 1.46502 * 120.00139 * 59.99724 * 12 2 1 14 14 C 1.34783 * 120.00121 * 240.00126 * 12 2 1 15 15 O 1.21362 * 119.99714 * 5.63046 * 14 12 2 16 16 C 1.49325 * 119.99916 * 185.62632 * 14 12 2 17 17 O 1.21394 * 120.00153 * 5.44741 * 16 14 12 18 18 N 1.34782 * 119.99762 * 185.44009 * 16 14 12 19 19 C 1.39888 * 119.99948 * 184.15758 * 18 16 14 20 20 C 1.38750 * 120.10564 * 329.42346 * 19 18 16 21 21 C 1.38191 * 119.99534 * 179.97438 * 20 19 18 22 22 C 1.38307 * 120.21400 * 0.02562 * 21 20 19 23 23 C 1.38208 * 120.21240 * 359.97438 * 22 21 20 24 24 C 1.38731 * 119.99771 * 359.73231 * 23 22 21 25 25 N 1.39828 * 120.10684 * 180.27305 * 24 23 22 26 26 C 1.46853 * 111.00174 * 64.48115 * 25 24 23 27 27 C 1.53035 * 109.52071 * 174.16100 * 26 25 24 28 28 C 1.53119 * 109.28149 * 59.18379 * 27 26 25 29 29 C 1.53119 * 109.15709 * 302.34266 * 28 27 26 30 30 C 1.46852 * 110.99703 * 300.27415 * 25 24 23 31 31 H 1.09000 * 109.46816 * 174.31239 * 1 2 3 32 32 H 1.09008 * 109.46807 * 294.31197 * 1 2 3 33 33 H 1.08993 * 109.47093 * 54.30926 * 1 2 3 34 34 H 0.97000 * 119.99966 * 355.22888 * 7 6 4 35 35 H 1.08996 * 109.47213 * 95.53562 * 13 12 2 36 36 H 1.09003 * 109.47212 * 215.54085 * 13 12 2 37 37 H 1.09001 * 109.46916 * 335.53382 * 13 12 2 38 38 H 0.97000 * 119.99847 * 4.16293 * 18 16 14 39 39 H 1.07996 * 120.00030 * 359.97438 * 20 19 18 40 40 H 1.08007 * 119.89272 * 179.97438 * 21 20 19 41 41 H 1.08003 * 119.89644 * 180.02562 * 22 21 20 42 42 H 1.08003 * 120.00368 * 180.02562 * 23 22 21 43 43 H 1.08997 * 109.46202 * 294.17597 * 26 25 24 44 44 H 1.09000 * 109.45649 * 54.14778 * 26 25 24 45 45 H 1.08994 * 109.50747 * 299.23984 * 27 26 25 46 46 H 1.09002 * 109.53509 * 179.13882 * 27 26 25 47 47 H 1.08990 * 109.52632 * 182.43762 * 28 27 26 48 48 H 1.09005 * 109.57609 * 62.27456 * 28 27 26 49 49 H 1.08991 * 109.50512 * 297.71023 * 29 28 27 50 50 H 1.09003 * 109.53685 * 177.61333 * 29 28 27 51 51 H 1.09001 * 109.46383 * 305.85429 * 30 25 24 52 52 H 1.08994 * 109.46251 * 65.83797 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5753 -1.6391 -1.1340 6 6 1.7989 -0.1749 -2.4794 7 7 1.9129 -0.9296 -3.5503 8 14 1.3279 1.6247 -2.6508 9 1 1.1396 1.9524 -4.0868 10 1 0.0629 1.8774 -1.9153 11 1 2.4068 2.4746 -2.0863 12 7 2.0184 -0.6906 1.1961 13 6 1.6646 -2.0932 1.4280 14 6 2.7933 -0.0356 2.0833 15 8 3.0025 1.1520 1.9456 16 6 3.3944 -0.7710 3.2356 17 8 3.2677 -1.9753 3.3196 18 7 4.0776 -0.0975 4.1823 19 6 4.7143 -0.7947 5.2145 20 6 4.1909 -1.9968 5.6686 21 6 4.8221 -2.6838 6.6881 22 6 5.9753 -2.1770 7.2592 23 6 6.5042 -0.9804 6.8136 24 6 5.8812 -0.2864 5.7865 25 7 6.4175 0.9216 5.3301 26 6 7.7384 0.7148 4.7227 27 6 8.2290 2.0270 4.1066 28 6 8.3103 3.0984 5.1975 29 6 6.9331 3.2599 5.8469 30 6 6.4799 1.9120 6.4126 31 1 -0.3633 -1.0226 -0.1018 32 1 -0.3633 0.4231 0.9366 33 1 -0.3633 0.5995 -0.8346 34 1 2.2281 -1.8433 -3.4684 35 1 2.4639 -2.7355 1.0585 36 1 1.5276 -2.2615 2.4962 37 1 0.7387 -2.3260 0.9020 38 1 4.1278 0.8706 4.1479 39 1 3.2904 -2.3954 5.2254 40 1 4.4130 -3.6192 7.0406 41 1 6.4646 -2.7185 8.0553 42 1 7.4051 -0.5880 7.2617 43 1 8.4425 0.3871 5.4874 44 1 7.6657 -0.0463 3.9458 45 1 7.5326 2.3483 3.3322 46 1 9.2161 1.8776 3.6691 47 1 8.6178 4.0459 4.7553 48 1 9.0360 2.7963 5.9528 49 1 6.2162 3.6006 5.0999 50 1 6.9937 3.9910 6.6531 51 1 5.4933 2.0203 6.8631 52 1 7.1901 1.5786 7.1692 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132141919.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:35 Heat of formation + Delta-G solvation = -22.119898 kcal Electronic energy + Delta-G solvation = -33188.598748 eV Core-core repulsion = 28960.566636 eV Total energy + Delta-G solvation = -4228.032111 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.11786 -40.02746 -38.54947 -37.64092 -35.96559 -34.66541 -33.86465 -32.73807 -31.10649 -30.34660 -30.05664 -29.08456 -26.40369 -25.17656 -24.72110 -24.46614 -23.31859 -22.77005 -21.58144 -20.58716 -19.81742 -19.12362 -17.91566 -17.58117 -17.14720 -17.04147 -16.14581 -15.85841 -15.36314 -15.27390 -15.14334 -14.82991 -14.60539 -14.20909 -13.97915 -13.85907 -13.74166 -13.60792 -13.33681 -13.21497 -12.84214 -12.71726 -12.55613 -12.38148 -12.30372 -11.94853 -11.82895 -11.77291 -11.52381 -11.46638 -11.33016 -11.00362 -10.78960 -10.72897 -10.68258 -10.53482 -10.40041 -9.95514 -9.80468 -9.13440 -9.01613 -8.90466 -8.70372 -8.37468 -8.18052 -7.89558 -6.54082 -4.18373 0.99251 1.16565 1.89570 2.66001 3.33989 3.45337 3.46098 3.50695 3.58471 3.72171 3.96625 4.42086 4.51495 4.61405 4.64836 4.68372 4.74345 4.88759 4.96784 5.05147 5.10225 5.18445 5.21216 5.26503 5.34829 5.41228 5.46693 5.58606 5.60529 5.65279 5.76105 5.86237 5.90980 5.93340 6.02756 6.09979 6.12614 6.18523 6.27036 6.31720 6.37005 6.37612 6.48030 6.54413 6.70154 6.71857 6.86897 6.95128 7.15300 7.24784 7.33206 7.70893 7.90895 8.13638 8.29155 8.47575 8.83045 9.50278 10.84375 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.011343 B = 0.002918 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.854913 B = 9594.946300 C =11215.180044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.232 3.768 3 H 0.057 0.943 4 C -0.614 4.614 5 H 0.063 0.937 6 C 0.038 3.962 7 N -0.897 5.897 8 Si 1.039 2.961 9 H -0.283 1.283 10 H -0.272 1.272 11 H -0.278 1.278 12 N -0.548 5.548 13 C 0.088 3.912 14 C 0.495 3.505 15 O -0.535 6.535 16 C 0.507 3.493 17 O -0.502 6.502 18 N -0.635 5.635 19 C 0.174 3.826 20 C -0.123 4.123 21 C -0.102 4.102 22 C -0.131 4.131 23 C -0.130 4.130 24 C 0.059 3.941 25 N -0.501 5.501 26 C 0.065 3.935 27 C -0.120 4.120 28 C -0.120 4.120 29 C -0.119 4.119 30 C 0.060 3.940 31 H 0.052 0.948 32 H 0.029 0.971 33 H 0.068 0.932 34 H 0.269 0.731 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.428 0.572 39 H 0.150 0.850 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.036 0.964 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.057 0.943 49 H 0.075 0.925 50 H 0.067 0.933 51 H 0.075 0.925 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.429 2.664 23.728 25.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.131 3.869 3 H 0.075 0.925 4 C -0.652 4.652 5 H 0.081 0.919 6 C -0.168 4.168 7 N -0.531 5.531 8 Si 0.867 3.133 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.204 1.204 12 N -0.278 5.278 13 C -0.055 4.055 14 C 0.276 3.724 15 O -0.414 6.414 16 C 0.291 3.709 17 O -0.377 6.377 18 N -0.280 5.280 19 C 0.078 3.922 20 C -0.144 4.144 21 C -0.121 4.121 22 C -0.150 4.150 23 C -0.151 4.151 24 C -0.037 4.037 25 N -0.223 5.223 26 C -0.062 4.062 27 C -0.158 4.158 28 C -0.158 4.158 29 C -0.157 4.157 30 C -0.066 4.066 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.266 0.734 39 H 0.167 0.833 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.055 0.945 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.075 0.925 49 H 0.094 0.906 50 H 0.086 0.914 51 H 0.094 0.906 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.647 3.799 22.087 24.022 hybrid contribution 1.228 -1.289 1.666 2.438 sum 9.874 2.510 23.754 25.847 Atomic orbital electron populations 1.22538 0.98091 1.01597 0.99910 1.19396 0.90917 0.94692 0.81854 0.92521 1.22151 1.41652 1.10648 0.90764 0.91904 1.25687 0.94337 1.05082 0.91724 1.70867 1.41170 1.09704 1.31324 0.84134 0.77488 0.75341 0.76315 1.20839 1.19802 1.20393 1.47964 1.45638 1.12751 1.21476 1.21894 1.01060 0.81187 1.01309 1.19635 0.81703 0.87231 0.83798 1.90716 1.60904 1.14462 1.75295 1.20798 0.79196 0.87605 0.83302 1.90675 1.56668 1.14186 1.76137 1.43118 1.49464 1.12116 1.23335 1.17685 0.91385 0.93568 0.89593 1.21473 1.01713 0.94518 0.96694 1.21091 0.95530 0.99700 0.95754 1.20991 0.97059 0.96137 1.00836 1.21373 1.00106 0.96008 0.97578 1.18490 0.94136 0.93175 0.97886 1.59404 1.24887 1.06829 1.31189 1.22116 0.87459 0.98302 0.98278 1.21621 1.01333 0.94305 0.98493 1.21571 0.96971 0.99195 0.98060 1.21618 0.97427 0.95898 1.00729 1.22168 1.01098 0.91813 0.91527 0.92853 0.95221 0.91384 0.92088 0.92583 0.90768 0.91162 0.73354 0.83269 0.85602 0.86130 0.86188 0.94528 0.90556 0.90509 0.91328 0.91647 0.92459 0.90604 0.91411 0.90612 0.94506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 8.74 37.16 0.32 -3.18 16 2 C 0.23 5.62 2.21 -69.08 -0.15 5.46 16 3 H 0.06 1.46 5.56 -51.93 -0.29 1.17 16 4 C -0.61 -16.96 8.67 -34.44 -0.30 -17.26 16 5 H 0.06 1.87 7.80 -52.49 -0.41 1.46 16 6 C 0.04 1.08 5.34 -17.82 -0.10 0.99 16 7 N -0.90 -26.94 13.70 55.43 0.76 -26.18 16 8 Si 1.04 24.89 26.45 -169.99 -4.50 20.39 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.27 -5.91 5.51 56.52 0.31 -5.60 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.55 -11.85 2.75 -175.81 -0.48 -12.33 16 13 C 0.09 1.67 8.37 59.85 0.50 2.17 16 14 C 0.50 10.21 7.72 -11.64 -0.09 10.12 16 15 O -0.53 -11.97 15.84 5.49 0.09 -11.89 16 16 C 0.51 8.86 7.57 -11.64 -0.09 8.77 16 17 O -0.50 -8.92 10.55 5.46 0.06 -8.87 16 18 N -0.63 -9.45 5.19 -10.16 -0.05 -9.50 16 19 C 0.17 2.34 6.39 -83.51 -0.53 1.81 16 20 C -0.12 -1.59 8.73 -39.41 -0.34 -1.93 16 21 C -0.10 -1.06 10.04 -39.57 -0.40 -1.46 16 22 C -0.13 -1.23 10.04 -39.57 -0.40 -1.62 16 23 C -0.13 -1.29 8.70 -39.41 -0.34 -1.63 16 24 C 0.06 0.69 4.70 -83.54 -0.39 0.30 16 25 N -0.50 -5.39 4.05 -170.95 -0.69 -6.08 16 26 C 0.06 0.66 5.17 -3.83 -0.02 0.64 16 27 C -0.12 -1.09 6.09 -26.65 -0.16 -1.26 16 28 C -0.12 -0.93 6.00 -26.61 -0.16 -1.09 16 29 C -0.12 -0.95 6.09 -26.65 -0.16 -1.11 16 30 C 0.06 0.53 5.11 -3.83 -0.02 0.51 16 31 H 0.05 1.11 6.89 -51.93 -0.36 0.75 16 32 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.07 1.48 4.84 -51.93 -0.25 1.23 16 34 H 0.27 8.05 8.73 -40.82 -0.36 7.69 16 35 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 36 H 0.07 1.25 5.98 -51.93 -0.31 0.94 16 37 H 0.07 1.29 6.55 -51.93 -0.34 0.95 16 38 H 0.43 6.19 7.91 -40.82 -0.32 5.87 16 39 H 0.15 2.07 5.89 -52.49 -0.31 1.76 16 40 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 42 H 0.12 1.00 7.13 -52.48 -0.37 0.63 16 43 H 0.04 0.33 7.57 -51.93 -0.39 -0.06 16 44 H 0.08 0.89 8.11 -51.93 -0.42 0.47 16 45 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 51 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 52 H 0.04 0.30 7.32 -51.93 -0.38 -0.08 16 LS Contribution 403.53 15.07 6.08 6.08 Total: -1.00 -30.92 403.53 -9.62 -40.54 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -8.05 Total: 7.63 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -2.83 Total: 0.22 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.47 Total: -54.10 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: 0.14 Total: -20.75 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -4.50 Total: 20.39 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.92 -9.62 -40.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132141919.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.418 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds