Wall clock time and date at job start Tue Mar 31 2020 07:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38242 * 119.99714 * 2 1 4 4 C 1.38301 * 119.99025 * 179.97438 * 3 2 1 5 5 Br 1.89100 * 120.00981 * 179.97438 * 4 3 2 6 6 C 1.38344 * 119.98108 * 359.97438 * 4 3 2 7 7 C 1.38206 * 119.99001 * 359.74775 * 6 4 3 8 8 C 1.38216 * 119.99327 * 179.97438 * 2 1 3 9 9 S 1.76201 * 119.99266 * 0.02562 * 8 2 1 10 10 O 1.42097 * 106.40675 * 179.90924 * 9 8 2 11 11 O 1.42103 * 106.40157 * 46.98915 * 9 8 2 12 12 N 1.65602 * 107.21565 * 293.45060 * 9 8 2 13 13 C 1.46495 * 119.99996 * 277.54048 * 12 9 8 14 14 C 1.46502 * 119.99756 * 97.54839 * 12 9 8 15 15 H 1.08994 * 109.47295 * 354.02507 * 14 12 9 16 16 C 1.52995 * 109.47349 * 114.03469 * 14 12 9 17 17 C 1.50706 * 109.46851 * 234.03005 * 14 12 9 18 18 H 1.08001 * 119.99700 * 359.97438 * 17 14 12 19 19 C 1.37871 * 120.00539 * 180.02562 * 17 14 12 20 20 N 1.31517 * 119.99513 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00264 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.47246 * 90.00106 * 21 19 17 23 23 H 1.48502 * 109.47087 * 209.99761 * 21 19 17 24 24 H 1.48501 * 109.47102 * 329.99482 * 21 19 17 25 25 H 1.09004 * 109.46975 * 264.27210 * 1 2 3 26 26 H 1.08997 * 109.46827 * 24.27091 * 1 2 3 27 27 H 1.08995 * 109.46984 * 144.26858 * 1 2 3 28 28 H 1.08001 * 120.00372 * 359.94638 * 3 2 1 29 29 H 1.07996 * 120.00899 * 180.02562 * 6 4 3 30 30 H 1.07998 * 119.99605 * 180.27950 * 7 6 4 31 31 H 1.09000 * 109.47367 * 269.99889 * 13 12 9 32 32 H 1.09000 * 109.47267 * 30.00481 * 13 12 9 33 33 H 1.09000 * 109.47197 * 150.00074 * 13 12 9 34 34 H 1.09001 * 109.46736 * 299.99361 * 16 14 12 35 35 H 1.08994 * 109.47707 * 59.99290 * 16 14 12 36 36 H 1.09003 * 109.47053 * 179.97438 * 16 14 12 37 37 H 0.96999 * 119.99615 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5812 1.1971 0.0005 5 35 4.5272 2.8345 -0.0002 6 6 4.2724 -0.0013 0.0016 7 6 3.5806 -1.1978 0.0074 8 6 2.1980 -1.1971 0.0005 9 16 1.3166 -2.7228 0.0005 10 8 2.2962 -3.7522 -0.0010 11 8 0.3111 -2.6053 -0.9967 12 7 0.5258 -2.8320 1.4514 13 6 1.2375 -3.3098 2.6394 14 6 -0.8856 -2.4509 1.5468 15 1 -1.2118 -2.0247 0.5982 16 6 -1.7274 -3.6878 1.8667 17 6 -1.0572 -1.4297 2.6418 18 1 -0.2007 -1.0981 3.2100 19 6 -2.3077 -0.9194 2.9189 20 7 -3.3508 -1.3236 2.2273 21 14 -2.5202 0.3469 4.2756 22 1 -2.3623 1.7104 3.7091 23 1 -3.8739 0.2120 4.8710 24 1 -1.4934 0.1248 5.3252 25 1 -0.3633 -0.1026 1.0226 26 1 -0.3633 0.9368 -0.4224 27 1 -0.3633 -0.8342 -0.6001 28 1 1.6582 2.1326 -0.0009 29 1 5.3523 -0.0020 0.0024 30 1 4.1201 -2.1334 0.0128 31 1 1.1383 -4.3929 2.7112 32 1 2.2921 -3.0458 2.5618 33 1 0.8114 -2.8462 3.5292 34 1 -1.6033 -4.4264 1.0748 35 1 -1.4012 -4.1140 2.8153 36 1 -2.7774 -3.4041 1.9382 37 1 -4.2305 -0.9644 2.4220 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133313017.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:42 Heat of formation + Delta-G solvation = -40.773971 kcal Electronic energy + Delta-G solvation = -23381.145104 eV Core-core repulsion = 19911.092914 eV Total energy + Delta-G solvation = -3470.052190 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 361.013 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.35397 -36.97437 -36.30675 -35.37479 -33.14155 -32.74115 -32.03021 -29.57769 -29.22714 -26.84401 -25.52801 -25.30149 -22.89295 -21.60508 -20.87193 -18.48392 -17.44973 -16.90011 -16.50558 -15.91774 -15.48214 -15.10345 -14.56814 -14.45129 -13.82665 -13.57383 -13.26357 -13.15735 -12.82682 -12.45003 -12.30295 -12.16034 -11.97235 -11.73922 -11.50698 -11.40084 -11.27844 -11.17018 -11.05861 -10.95056 -10.81138 -10.51981 -10.47649 -10.34497 -10.20271 -10.06492 -9.30703 -9.04621 -8.73162 -8.56135 -8.05928 -6.22635 -4.30613 0.60723 0.96978 1.28671 1.40810 3.16714 3.25087 3.25836 3.28818 3.64130 4.19827 4.24635 4.58778 4.81761 4.91245 5.07005 5.19055 5.38194 5.49332 5.55332 5.74991 5.86989 5.97779 6.05626 6.13343 6.25668 6.35507 6.50016 6.62151 6.70219 6.80544 6.82151 7.00836 7.07196 7.36102 7.52046 7.67710 7.94262 8.13960 8.72441 9.34489 10.81463 Molecular weight = 361.01amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.004441 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.995333 B = 6303.037136 C = 7941.486298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.055 3.945 3 C -0.124 4.124 4 C -0.037 4.037 5 Br -0.053 7.053 6 C -0.134 4.134 7 C -0.015 4.015 8 C -0.672 4.672 9 S 2.686 3.314 10 O -0.975 6.975 11 O -0.955 6.955 12 N -0.978 5.978 13 C 0.103 3.897 14 C 0.258 3.742 15 H 0.071 0.929 16 C -0.147 4.147 17 C -0.529 4.529 18 H 0.066 0.934 19 C 0.069 3.931 20 N -0.878 5.878 21 Si 0.892 3.108 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.141 0.859 26 H 0.072 0.928 27 H 0.111 0.889 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.147 0.853 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.013 0.987 35 H 0.033 0.967 36 H 0.094 0.906 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.952 5.299 -2.799 14.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.053 3.947 3 C -0.144 4.144 4 C -0.116 4.116 5 Br 0.033 6.967 6 C -0.155 4.155 7 C -0.035 4.035 8 C -0.756 4.756 9 S 2.776 3.224 10 O -0.965 6.965 11 O -0.945 6.945 12 N -0.818 5.818 13 C -0.043 4.043 14 C 0.156 3.844 15 H 0.088 0.912 16 C -0.207 4.207 17 C -0.568 4.568 18 H 0.084 0.916 19 C -0.135 4.135 20 N -0.515 5.515 21 Si 0.719 3.281 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.198 1.198 25 H 0.158 0.842 26 H 0.091 0.909 27 H 0.130 0.870 28 H 0.156 0.844 29 H 0.154 0.846 30 H 0.165 0.835 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.032 0.968 35 H 0.052 0.948 36 H 0.113 0.887 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.105 5.359 -3.489 14.582 hybrid contribution 0.025 1.221 1.111 1.651 sum 13.130 6.580 -2.378 14.878 Atomic orbital electron populations 1.22322 0.88280 1.05732 1.09257 1.19803 0.97221 0.90635 0.87071 1.21172 0.91859 0.99096 1.02290 1.22035 0.94946 0.91664 1.02984 1.96710 1.75110 1.27408 1.97447 1.21081 1.00224 0.90845 1.03336 1.20939 0.92126 0.98711 0.91730 1.31312 1.06116 1.21380 1.16841 1.02148 0.72922 0.73514 0.73845 1.93501 1.62194 1.53803 1.87031 1.93510 1.57330 1.86493 1.57155 1.57392 1.21570 1.78911 1.23958 1.21276 0.94367 0.98820 0.89841 1.19051 0.72905 0.93252 0.99225 0.91170 1.22098 1.04147 0.96639 0.97825 1.21313 0.93862 1.23149 1.18469 0.91565 1.24909 0.95776 0.96601 0.96193 1.69875 0.99514 1.42407 1.39740 0.86595 0.77682 0.81647 0.82147 1.20484 1.21067 1.19826 0.84192 0.90911 0.87048 0.84352 0.84594 0.83487 0.93378 0.93264 0.89670 0.96804 0.94768 0.88746 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.66 8.09 36.01 0.29 -3.37 16 2 C 0.05 0.94 5.87 -104.63 -0.61 0.32 16 3 C -0.12 -1.86 9.42 -39.56 -0.37 -2.23 16 4 C -0.04 -0.51 6.22 -39.52 -0.25 -0.75 16 5 Br -0.05 -0.61 33.70 -68.01 -2.29 -2.90 16 6 C -0.13 -1.78 9.79 -39.55 -0.39 -2.16 16 7 C -0.02 -0.22 9.55 -39.58 -0.38 -0.60 16 8 C -0.67 -11.44 5.91 -39.58 -0.23 -11.67 16 9 S 2.69 50.95 5.03 -107.50 -0.54 50.41 16 10 O -0.98 -19.01 16.31 -57.17 -0.93 -19.94 16 11 O -0.95 -20.33 13.99 -57.17 -0.80 -21.13 16 12 N -0.98 -18.98 3.05 -115.86 -0.35 -19.34 16 13 C 0.10 1.73 9.52 59.84 0.57 2.30 16 14 C 0.26 5.73 1.62 -69.08 -0.11 5.62 16 15 H 0.07 1.67 4.88 -51.93 -0.25 1.42 16 16 C -0.15 -3.28 9.05 37.16 0.34 -2.95 16 17 C -0.53 -12.20 5.58 -34.44 -0.19 -12.39 16 18 H 0.07 1.50 6.92 -52.49 -0.36 1.14 16 19 C 0.07 1.67 5.30 -17.82 -0.09 1.57 16 20 N -0.88 -22.14 11.32 55.43 0.63 -21.52 16 21 Si 0.89 19.06 29.54 -169.99 -5.02 14.04 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 25 H 0.14 2.83 4.72 -51.93 -0.24 2.58 16 26 H 0.07 1.16 8.05 -51.93 -0.42 0.74 16 27 H 0.11 2.21 4.00 -51.93 -0.21 2.00 16 28 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 29 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.15 1.91 7.33 -52.49 -0.38 1.53 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.71 7.98 -51.93 -0.41 0.30 16 33 H 0.08 1.45 6.58 -51.93 -0.34 1.10 16 34 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.03 0.71 7.82 -51.93 -0.41 0.31 16 36 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 37 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 LS Contribution 325.23 15.07 4.90 4.90 Total: -1.00 -26.73 325.23 -10.02 -36.75 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.17 Total: 5.05 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: -1.43 Total: -26.32 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.27 Total: -40.85 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -1.73 Total: -41.07 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Atomic # 16 Polarization: 50.95 SS G_CDS: -0.54 Total: 50.41 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -2.29 Total: -2.90 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -26.73 -10.02 -36.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133313017.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.022 kcal (2) G-P(sol) polarization free energy of solvation -26.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds