Wall clock time and date at job start Tue Mar 31 2020 06:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86811 * 120.00094 * 2 1 4 4 H 1.48497 * 109.46657 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46557 * 120.00052 * 3 2 1 6 6 H 1.48497 * 109.47032 * 240.00191 * 3 2 1 7 7 C 1.37878 * 120.00256 * 179.72503 * 2 1 3 8 8 H 1.08001 * 120.00098 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99772 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.34772 * 119.99870 * 269.99896 * 10 9 7 12 12 O 1.21273 * 120.00247 * 6.52845 * 11 10 9 13 13 C 1.50707 * 119.99674 * 186.53175 * 11 10 9 14 14 N 1.46499 * 109.46878 * 195.47265 * 13 11 10 15 15 C 1.46764 * 124.34737 * 90.00277 * 14 13 11 16 16 C 1.54480 * 105.47366 * 197.01399 * 15 14 13 17 17 C 1.54625 * 101.76544 * 334.58376 * 16 15 14 18 18 C 1.34416 * 124.35101 * 269.69891 * 14 13 11 19 19 O 1.21282 * 124.94328 * 359.57616 * 18 14 13 20 20 C 1.46500 * 119.99782 * 89.99597 * 10 9 7 21 21 C 1.52999 * 109.47070 * 127.19997 * 20 10 9 22 22 C 1.53004 * 109.47514 * 179.97438 * 21 20 10 23 23 C 1.52999 * 109.46807 * 300.00601 * 22 21 20 24 24 C 1.52997 * 109.47523 * 59.99822 * 23 22 21 25 25 C 1.53001 * 109.47157 * 59.99544 * 24 23 22 26 26 C 1.52997 * 109.47213 * 300.00054 * 25 24 23 27 27 C 1.53001 * 109.46745 * 60.00366 * 22 21 20 28 28 C 1.53001 * 109.47337 * 300.00064 * 26 25 24 29 29 C 1.52997 * 109.47361 * 247.20153 * 20 10 9 30 30 H 0.96998 * 120.00291 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46790 * 299.99993 * 9 7 2 32 32 H 1.09000 * 109.47216 * 59.99741 * 9 7 2 33 33 H 1.09003 * 109.47064 * 315.47597 * 13 11 10 34 34 H 1.08998 * 109.46886 * 75.47696 * 13 11 10 35 35 H 1.09000 * 110.24549 * 316.01556 * 15 14 13 36 36 H 1.08993 * 110.25091 * 77.92551 * 15 14 13 37 37 H 1.09003 * 110.96916 * 92.70182 * 16 15 14 38 38 H 1.08998 * 110.96857 * 216.46197 * 16 15 14 39 39 H 1.09003 * 110.49003 * 143.47381 * 17 16 15 40 40 H 1.08997 * 110.48431 * 265.98791 * 17 16 15 41 41 H 1.09002 * 109.47598 * 300.00510 * 21 20 10 42 42 H 1.09000 * 109.47066 * 59.99966 * 21 20 10 43 43 H 1.08999 * 109.47182 * 179.97438 * 22 21 20 44 44 H 1.09000 * 109.46938 * 299.99340 * 23 22 21 45 45 H 1.09006 * 109.46633 * 179.97438 * 23 22 21 46 46 H 1.08994 * 109.47107 * 180.02562 * 24 23 22 47 47 H 1.08999 * 109.46911 * 179.97438 * 25 24 23 48 48 H 1.08998 * 109.46612 * 60.00102 * 25 24 23 49 49 H 1.08995 * 109.46983 * 179.97438 * 26 25 24 50 50 H 1.08994 * 109.46999 * 180.02562 * 27 22 21 51 51 H 1.08992 * 109.47206 * 59.99887 * 27 22 21 52 52 H 1.08999 * 109.46859 * 300.00300 * 28 26 25 53 53 H 1.08994 * 109.46932 * 180.02562 * 28 26 25 54 54 H 1.09000 * 109.46875 * 300.00096 * 29 20 10 55 55 H 1.08996 * 109.46900 * 60.00052 * 29 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0057 8 1 3.0846 -1.1940 0.0053 9 6 1.2510 -2.4991 0.0114 10 7 2.2030 -3.6126 0.0163 11 6 2.6409 -4.1299 -1.1487 12 8 2.3414 -3.6005 -2.1979 13 6 3.5026 -5.3663 -1.1475 14 7 4.1436 -5.5160 -2.4563 15 6 5.4480 -4.9437 -2.8097 16 6 5.5073 -4.9752 -4.3531 17 6 4.5390 -6.1349 -4.6822 18 6 3.6153 -6.2000 -3.4858 19 8 2.5518 -6.7823 -3.4601 20 6 2.6790 -4.1638 1.2874 21 6 2.4622 -5.6783 1.2997 22 6 2.9599 -6.2541 2.6270 23 6 4.4510 -5.9509 2.7872 24 6 4.6678 -4.4365 2.7750 25 6 3.8911 -3.8007 3.9298 26 6 2.4001 -4.1038 3.7695 27 6 2.1833 -5.6184 3.7818 28 6 1.9024 -3.5281 2.4422 29 6 4.1700 -3.8607 1.4483 30 1 -0.4850 -0.8400 -0.0004 31 1 0.6240 -2.5528 0.9015 32 1 0.6247 -2.5609 -0.8785 33 1 4.2676 -5.2752 -0.3764 34 1 2.8838 -6.2402 -0.9440 35 1 5.5194 -3.9171 -2.4503 36 1 6.2516 -5.5471 -2.3877 37 1 5.1499 -4.0364 -4.7764 38 1 6.5161 -5.1988 -4.7001 39 1 3.9768 -5.9165 -5.5902 40 1 5.0873 -7.0707 -4.7899 41 1 1.4000 -5.8943 1.1851 42 1 3.0158 -6.1313 0.4773 43 1 2.8050 -7.3330 2.6359 44 1 5.0043 -6.4039 1.9645 45 1 4.8055 -6.3608 3.7331 46 1 5.7301 -4.2206 2.8887 47 1 4.0460 -2.7218 3.9214 48 1 4.2457 -4.2109 4.8754 49 1 1.8469 -3.6513 4.5925 50 1 2.5381 -6.0282 4.7274 51 1 1.1211 -5.8342 3.6677 52 1 2.0569 -2.4491 2.4335 53 1 0.8400 -3.7436 2.3283 54 1 4.7236 -4.3137 0.6258 55 1 4.3245 -2.7818 1.4395 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133705167.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:06 Heat of formation + Delta-G solvation = -84.400753 kcal Electronic energy + Delta-G solvation = -36230.305537 eV Core-core repulsion = 32037.687157 eV Total energy + Delta-G solvation = -4192.618379 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 360.220 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -43.00373 -41.45287 -40.06791 -37.50571 -36.92891 -35.39357 -34.23419 -33.56901 -33.33582 -31.65985 -29.91510 -28.52195 -27.90705 -26.96468 -26.63816 -24.91784 -23.14533 -22.75505 -22.37995 -22.24374 -20.94819 -20.23598 -19.05579 -18.58724 -18.20617 -17.68317 -17.41146 -16.82830 -16.57737 -16.01413 -15.75251 -15.57220 -15.50437 -15.39023 -15.08352 -14.79922 -14.67350 -14.62135 -14.39751 -14.25298 -14.17191 -14.05280 -13.79984 -13.57267 -13.43264 -13.34351 -13.14678 -13.09687 -12.95434 -12.54404 -12.37601 -12.08626 -12.02347 -11.95401 -11.82669 -11.74299 -11.62313 -11.55097 -11.26124 -11.16472 -10.99592 -10.87311 -10.64888 -10.62216 -10.46746 -9.77476 -9.46958 -8.70817 -6.45524 1.36210 1.42618 1.52243 1.57454 1.71303 1.91763 2.24511 2.49723 3.06848 3.32852 3.35322 3.47566 3.56187 3.57952 3.80442 3.83598 3.98496 4.05067 4.06743 4.12930 4.17391 4.20368 4.24745 4.27200 4.30208 4.39775 4.42520 4.58306 4.63990 4.66059 4.72293 4.73371 4.80667 4.82284 4.83112 4.86228 4.91949 5.03105 5.04016 5.11527 5.16323 5.17665 5.19048 5.19898 5.27218 5.28978 5.36139 5.43971 5.51074 5.53381 5.63592 5.67481 5.79735 6.05051 6.10967 6.40726 6.60831 7.04874 7.22557 7.35916 8.62464 Molecular weight = 360.22amu Principal moments of inertia in cm(-1) A = 0.007114 B = 0.005408 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3934.739653 B = 5176.742102 C = 7751.324855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.034 4.034 3 Si 1.115 2.885 4 H -0.280 1.280 5 H -0.260 1.260 6 H -0.280 1.280 7 C -0.596 4.596 8 H 0.043 0.957 9 C 0.250 3.750 10 N -0.588 5.588 11 C 0.478 3.522 12 O -0.589 6.589 13 C 0.106 3.894 14 N -0.610 5.610 15 C 0.093 3.907 16 C -0.120 4.120 17 C -0.142 4.142 18 C 0.501 3.499 19 O -0.590 6.590 20 C 0.173 3.827 21 C -0.149 4.149 22 C -0.075 4.075 23 C -0.103 4.103 24 C -0.076 4.076 25 C -0.106 4.106 26 C -0.080 4.080 27 C -0.106 4.106 28 C -0.104 4.104 29 C -0.120 4.120 30 H 0.251 0.749 31 H 0.025 0.975 32 H -0.027 1.027 33 H 0.147 0.853 34 H 0.118 0.882 35 H 0.062 0.938 36 H 0.118 0.882 37 H 0.064 0.936 38 H 0.137 0.863 39 H 0.099 0.901 40 H 0.139 0.861 41 H 0.047 0.953 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.046 0.954 48 H 0.093 0.907 49 H 0.072 0.928 50 H 0.092 0.908 51 H 0.051 0.949 52 H 0.046 0.954 53 H 0.037 0.963 54 H 0.073 0.927 55 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.167 -16.426 6.798 26.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.231 4.231 3 Si 0.936 3.064 4 H -0.205 1.205 5 H -0.184 1.184 6 H -0.206 1.206 7 C -0.634 4.634 8 H 0.062 0.938 9 C 0.128 3.872 10 N -0.319 5.319 11 C 0.265 3.735 12 O -0.470 6.470 13 C -0.019 4.019 14 N -0.342 5.342 15 C -0.029 4.029 16 C -0.158 4.158 17 C -0.182 4.182 18 C 0.292 3.708 19 O -0.471 6.471 20 C 0.090 3.910 21 C -0.187 4.187 22 C -0.094 4.094 23 C -0.140 4.140 24 C -0.095 4.095 25 C -0.144 4.144 26 C -0.099 4.099 27 C -0.143 4.143 28 C -0.142 4.142 29 C -0.158 4.158 30 H 0.060 0.940 31 H 0.043 0.957 32 H -0.009 1.009 33 H 0.164 0.836 34 H 0.135 0.865 35 H 0.081 0.919 36 H 0.136 0.864 37 H 0.083 0.917 38 H 0.155 0.845 39 H 0.117 0.883 40 H 0.157 0.843 41 H 0.066 0.934 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.065 0.935 48 H 0.111 0.889 49 H 0.090 0.910 50 H 0.111 0.889 51 H 0.070 0.930 52 H 0.065 0.935 53 H 0.056 0.944 54 H 0.091 0.909 55 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 18.238 -14.792 6.351 24.326 hybrid contribution -1.446 -0.688 -0.517 1.682 sum 16.792 -15.480 5.834 23.572 Atomic orbital electron populations 1.70925 1.07823 1.29421 1.48820 1.27330 0.96505 1.06481 0.92801 0.82981 0.74255 0.71292 0.77890 1.20507 1.18413 1.20578 1.22349 0.94057 0.92522 1.54477 0.93827 1.18861 0.88687 0.85494 0.94164 1.48328 1.44185 1.33349 1.06032 1.21798 0.81541 0.86770 0.83361 1.90633 1.59529 1.63581 1.33240 1.22296 0.97880 0.95190 0.86556 1.48278 1.21589 1.52161 1.12187 1.22484 0.83410 0.99482 0.97490 1.22639 1.02150 0.97743 0.93221 1.22351 0.97513 1.03103 0.95213 1.21959 0.85657 0.76612 0.86605 1.90658 1.24769 1.47561 1.84079 1.20541 0.94882 0.93604 0.81991 1.22676 1.01598 0.93211 1.01210 1.21071 0.96136 1.00252 0.91953 1.21602 0.94534 0.94049 1.03850 1.21076 1.00172 0.96142 0.92122 1.21558 0.93525 1.00032 0.99255 1.21082 0.97307 0.96841 0.94699 1.21578 0.99768 0.93484 0.99454 1.21659 0.97794 0.99672 0.95106 1.22097 0.93516 1.00673 0.99562 0.93994 0.95718 1.00899 0.83625 0.86471 0.91930 0.86381 0.91716 0.84495 0.88305 0.84332 0.93437 0.89050 0.88608 0.90464 0.88876 0.88747 0.93499 0.88899 0.90953 0.88930 0.93033 0.93543 0.94375 0.90924 0.93819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.17 13.65 21.45 0.29 -59.88 16 2 C -0.03 -2.02 5.46 84.66 0.46 -1.56 16 3 Si 1.12 52.59 29.90 68.60 2.05 54.65 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.60 -35.54 8.92 25.60 0.23 -35.31 16 8 H 0.04 2.59 7.81 -2.91 -0.02 2.57 16 9 C 0.25 14.18 3.77 85.63 0.32 14.50 16 10 N -0.59 -26.75 2.41 -779.08 -1.87 -28.62 16 11 C 0.48 21.90 7.22 87.66 0.63 22.53 16 12 O -0.59 -33.78 16.11 -3.01 -0.05 -33.83 16 13 C 0.11 3.40 4.08 85.64 0.35 3.74 16 14 N -0.61 -18.30 2.49 -822.30 -2.04 -20.34 16 15 C 0.09 1.86 7.35 86.83 0.64 2.50 16 16 C -0.12 -1.97 7.18 31.65 0.23 -1.74 16 17 C -0.14 -2.90 6.86 30.59 0.21 -2.69 16 18 C 0.50 16.64 7.97 87.90 0.70 17.34 16 19 O -0.59 -25.51 17.59 -3.04 -0.05 -25.56 16 20 C 0.17 5.79 0.77 3.60 0.00 5.80 16 21 C -0.15 -3.93 4.01 30.60 0.12 -3.81 16 22 C -0.08 -1.34 3.20 -10.79 -0.03 -1.37 16 23 C -0.10 -1.41 5.19 30.59 0.16 -1.25 16 24 C -0.08 -1.42 3.19 -10.81 -0.03 -1.45 16 25 C -0.11 -2.16 5.19 30.59 0.16 -2.00 16 26 C -0.08 -1.95 3.19 -10.79 -0.03 -1.99 16 27 C -0.11 -1.99 5.19 30.60 0.16 -1.83 16 28 C -0.10 -3.68 3.16 30.59 0.10 -3.59 16 29 C -0.12 -3.35 4.42 30.58 0.14 -3.22 16 30 H 0.25 16.60 7.22 -92.71 -0.67 15.93 16 31 H 0.03 1.42 5.55 -2.38 -0.01 1.41 16 32 H -0.03 -1.80 7.38 -2.39 -0.02 -1.81 16 33 H 0.15 3.57 3.97 -2.39 -0.01 3.56 16 34 H 0.12 3.74 6.09 -2.39 -0.01 3.72 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.09 2.22 3.19 -2.39 -0.01 2.22 16 43 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 46 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 49 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.05 2.01 7.14 -2.39 -0.02 1.99 16 53 H 0.04 1.49 7.22 -2.39 -0.02 1.47 16 54 H 0.07 1.79 5.04 -2.39 -0.01 1.78 16 55 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -91.96 398.83 3.81 -88.14 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.99 Total: 20.82 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 4.50 Total: 4.62 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -3.63 Total: -108.84 kcal Atomic # 8 Polarization: -59.29 SS G_CDS: -0.10 Total: -59.39 kcal Atomic # 14 Polarization: 52.59 SS G_CDS: 2.05 Total: 54.65 kcal Total: -91.96 3.81 -88.14 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133705167.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.744 kcal (2) G-P(sol) polarization free energy of solvation -91.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds