Wall clock time and date at job start Tue Mar 31 2020 05:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99859 * 2 1 4 4 H 1.48503 * 109.47548 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47266 * 300.00004 * 3 2 1 6 6 H 1.48498 * 109.47190 * 60.00022 * 3 2 1 7 7 C 1.38795 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00210 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99854 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46840 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00240 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99717 * 180.02562 * 11 10 9 14 14 C 1.40109 * 119.99570 * 185.27791 * 13 11 10 15 15 C 1.39361 * 119.81278 * 33.47401 * 14 13 11 16 16 C 1.37741 * 120.38921 * 180.25547 * 15 14 13 17 17 C 1.38840 * 119.92273 * 359.48789 * 16 15 14 18 18 N 1.38229 * 133.97032 * 180.15778 * 17 16 15 19 19 H 0.97002 * 126.34988 * 0.30735 * 18 17 16 20 20 C 1.35993 * 107.29959 * 180.33259 * 18 17 16 21 21 C 1.50703 * 124.94800 * 179.97438 * 20 18 17 22 22 C 1.52999 * 109.46896 * 35.00377 * 21 20 18 23 23 C 1.53001 * 109.47036 * 180.02562 * 22 21 20 24 24 C 1.52998 * 109.47094 * 60.00054 * 23 22 21 25 25 C 1.52999 * 109.47135 * 299.99886 * 24 23 22 26 26 C 1.52998 * 109.47095 * 275.00517 * 21 20 18 27 27 N 1.30120 * 110.10690 * 0.02562 * 20 18 17 28 28 C 1.35792 * 109.66132 * 359.97438 * 27 20 18 29 29 C 1.38184 * 119.80806 * 213.49410 * 14 13 11 30 30 H 0.97002 * 120.00306 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.46959 * 60.00391 * 10 9 7 32 32 H 1.08990 * 109.47547 * 299.99869 * 10 9 7 33 33 H 0.97001 * 120.00331 * 5.27212 * 13 11 10 34 34 H 1.07999 * 119.80798 * 359.97438 * 15 14 13 35 35 H 1.08003 * 120.03934 * 179.74784 * 16 15 14 36 36 H 1.09000 * 109.46871 * 155.00371 * 21 20 18 37 37 H 1.09007 * 109.47225 * 300.00038 * 22 21 20 38 38 H 1.09001 * 109.47213 * 59.99740 * 22 21 20 39 39 H 1.09000 * 109.46732 * 299.99994 * 23 22 21 40 40 H 1.09001 * 109.46919 * 179.97438 * 23 22 21 41 41 H 1.09004 * 109.47012 * 180.02562 * 24 23 22 42 42 H 1.08994 * 109.47317 * 59.99900 * 24 23 22 43 43 H 1.09000 * 109.47355 * 300.00467 * 25 24 23 44 44 H 1.09001 * 109.47213 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.47029 * 299.99506 * 26 21 20 46 46 H 1.08994 * 109.47317 * 59.99728 * 26 21 20 47 47 H 1.07997 * 120.14726 * 0.02562 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8443 -6.3430 -0.0008 14 6 2.3570 -7.6518 -0.1130 15 6 1.2210 -7.9049 -0.8795 16 6 0.7287 -9.1862 -0.9937 17 6 1.3722 -10.2353 -0.3510 18 7 1.1429 -11.5959 -0.2692 19 1 0.4218 -12.0842 -0.6964 20 6 2.1155 -12.1231 0.5218 21 6 2.2428 -13.5821 0.8772 22 6 1.8009 -14.4370 -0.3122 23 6 1.9295 -15.9183 0.0488 24 6 1.0429 -16.2277 1.2567 25 6 1.4848 -15.3727 2.4461 26 6 1.3565 -13.8919 2.0853 27 7 2.9195 -11.1841 0.9280 28 6 2.5176 -9.9889 0.4243 29 6 3.0054 -8.6843 0.5374 30 1 -0.4851 0.8400 0.0004 31 1 3.1245 -3.7312 0.8895 32 1 3.1245 -3.7313 -0.8904 33 1 3.7983 -6.1857 0.0771 34 1 0.7211 -7.0909 -1.3833 35 1 -0.1545 -9.3753 -1.5859 36 1 3.2810 -13.8074 1.1208 37 1 0.7626 -14.2117 -0.5559 38 1 2.4322 -14.2163 -1.1729 39 1 2.9676 -16.1439 0.2927 40 1 1.6142 -16.5274 -0.7984 41 1 1.1349 -17.2829 1.5141 42 1 0.0048 -16.0020 1.0128 43 1 2.5229 -15.5983 2.6900 44 1 0.8534 -15.5935 3.3067 45 1 1.6714 -13.2828 2.9326 46 1 0.3184 -13.6665 1.8416 47 1 3.8851 -8.4839 1.1311 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154644174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:44 Heat of formation + Delta-G solvation = 9.683234 kcal Electronic energy + Delta-G solvation = -27752.310052 eV Core-core repulsion = 23832.576804 eV Total energy + Delta-G solvation = -3919.733247 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.34385 -39.96151 -38.92163 -37.00199 -34.16653 -33.22649 -32.45511 -32.03695 -31.31737 -30.07527 -29.37584 -27.53457 -25.50945 -24.20860 -23.20032 -22.59382 -22.29243 -21.01137 -20.36367 -20.01346 -18.19128 -17.88972 -17.65821 -16.71598 -16.20829 -15.53487 -15.50137 -15.13036 -14.82548 -14.81463 -14.65382 -14.60441 -14.25141 -14.04962 -13.93124 -13.36155 -13.12475 -13.00420 -12.88403 -12.75359 -12.59290 -12.35627 -11.92333 -11.84146 -11.70661 -11.54880 -11.08493 -11.07585 -11.04541 -10.92392 -10.78522 -10.76811 -10.62580 -10.14229 -9.89387 -9.83992 -9.49737 -9.09649 -8.28494 -8.19222 -7.82102 -6.53866 -6.24406 -3.95469 0.86278 1.38157 2.61289 2.68691 2.90354 2.95726 3.20627 3.26103 3.30661 3.55702 3.76119 3.84637 4.12444 4.17493 4.20895 4.37761 4.53721 4.65781 4.69690 4.87785 4.90881 4.93318 4.93817 5.04010 5.08745 5.11310 5.20369 5.25056 5.32444 5.37223 5.41713 5.48050 5.54075 5.56621 5.57878 5.63826 5.69910 5.77248 5.81334 5.87225 5.94403 6.07840 6.23557 6.30942 6.39763 6.44789 6.97042 7.15119 7.53384 7.58027 7.74833 8.32988 8.42336 9.21370 10.83090 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.040594 B = 0.001463 C = 0.001454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.587528 B =19132.147352 C =19251.976246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.058 6.058 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.497 6.497 13 N -0.679 5.679 14 C 0.158 3.842 15 C -0.095 4.095 16 C -0.094 4.094 17 C 0.031 3.969 18 N -0.597 5.597 19 H 0.419 0.581 20 C 0.289 3.711 21 C -0.008 4.008 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.123 4.123 25 C -0.118 4.118 26 C -0.111 4.111 27 N -0.493 5.493 28 C 0.068 3.932 29 C -0.106 4.106 30 H 0.268 0.732 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.410 0.590 34 H 0.147 0.853 35 H 0.126 0.874 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.978 -33.332 -0.457 33.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.169 5.831 10 C -0.305 4.305 11 C 0.320 3.680 12 O -0.370 6.370 13 N -0.326 5.326 14 C 0.061 3.939 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.078 4.078 18 N -0.209 5.209 19 H 0.258 0.742 20 C 0.022 3.978 21 C -0.028 4.028 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.160 4.160 25 C -0.156 4.156 26 C -0.150 4.150 27 N -0.213 5.213 28 C -0.051 4.051 29 C -0.128 4.128 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.246 0.754 34 H 0.165 0.835 35 H 0.144 0.856 36 H 0.125 0.875 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.570 -33.486 0.069 33.676 hybrid contribution 1.347 1.348 -0.663 2.018 sum 4.917 -32.138 -0.594 32.517 Atomic orbital electron populations 1.70019 1.05968 1.27414 1.46858 1.24988 0.95025 0.99060 0.94460 0.86110 0.79607 0.81823 0.77916 1.19575 1.20555 1.20549 1.22906 0.94985 0.91523 1.58991 0.90761 1.85406 1.04572 0.96377 1.96753 1.23548 1.06927 0.94582 1.05398 1.20517 0.86487 0.86237 0.74733 1.90713 1.15220 1.85242 1.45777 1.43670 1.10971 1.03592 1.74359 1.17369 0.95882 0.83995 0.96649 1.21014 0.96159 0.96329 0.98136 1.19794 1.00404 0.89976 1.01413 1.18865 1.00095 0.84170 1.04652 1.42946 1.27339 1.06430 1.44172 0.74249 1.23411 0.86341 0.96408 0.91679 1.19833 1.02816 0.84029 0.96132 1.21639 1.01513 0.95354 0.97147 1.21506 1.00660 0.95075 0.98219 1.21584 0.99633 0.99716 0.95109 1.21525 1.02072 0.94034 0.97964 1.21581 0.99367 0.96953 0.97098 1.70367 1.27516 0.97534 1.25912 1.18594 0.94654 0.92640 0.99184 1.19777 1.02679 0.88884 1.01508 0.92196 0.88793 0.88692 0.75386 0.83550 0.85596 0.87538 0.91946 0.91169 0.91419 0.91529 0.91749 0.91921 0.91474 0.91487 0.90847 0.91818 0.85030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.89 13.22 55.49 0.73 -25.15 16 2 C 0.07 2.09 5.49 -17.44 -0.10 1.99 16 3 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -15.03 9.50 30.94 0.29 -14.74 16 8 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 9 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 10 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 11 C 0.53 9.71 7.58 -10.98 -0.08 9.62 16 12 O -0.50 -10.82 13.54 5.55 0.08 -10.75 16 13 N -0.68 -9.52 5.34 -9.86 -0.05 -9.57 16 14 C 0.16 2.27 6.27 -83.67 -0.52 1.75 16 15 C -0.10 -1.39 8.63 -39.35 -0.34 -1.73 16 16 C -0.09 -1.18 10.06 -39.54 -0.40 -1.57 16 17 C 0.03 0.39 7.30 -83.91 -0.61 -0.22 16 18 N -0.60 -5.57 5.98 -7.97 -0.05 -5.62 16 19 H 0.42 2.55 8.09 -40.82 -0.33 2.22 16 20 C 0.29 2.90 6.82 -154.86 -1.06 1.85 16 21 C -0.01 -0.05 2.66 -91.77 -0.24 -0.30 16 22 C -0.12 -0.54 4.93 -26.73 -0.13 -0.67 16 23 C -0.12 -0.43 5.92 -26.73 -0.16 -0.59 16 24 C -0.12 -0.46 5.92 -26.73 -0.16 -0.62 16 25 C -0.12 -0.52 5.92 -26.76 -0.16 -0.68 16 26 C -0.11 -0.66 5.18 -26.76 -0.14 -0.80 16 27 N -0.49 -6.59 11.27 -8.25 -0.09 -6.68 16 28 C 0.07 0.95 7.22 -84.71 -0.61 0.34 16 29 C -0.11 -1.44 10.00 -39.04 -0.39 -1.83 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 31 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 32 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 33 H 0.41 4.32 8.82 -40.82 -0.36 3.96 16 34 H 0.15 2.35 6.40 -52.49 -0.34 2.01 16 35 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 36 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.24 7.36 -51.92 -0.38 -0.14 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 43 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 396.97 15.07 5.98 5.98 Total: -1.00 -35.40 396.97 -12.09 -47.50 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.87 Total: 2.81 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -4.59 Total: -10.98 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.54 Total: -47.02 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.40 -12.09 -47.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154644174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.180 kcal (2) G-P(sol) polarization free energy of solvation -35.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds