Wall clock time and date at job start Tue Mar 31 2020 05:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47408 * 2 1 4 4 N 1.46501 * 109.47502 * 179.97438 * 3 2 1 5 5 C 1.40019 * 119.77510 * 90.00188 * 4 3 2 6 6 C 1.38874 * 120.12194 * 18.49081 * 5 4 3 7 7 C 1.38030 * 119.98784 * 180.02562 * 6 5 4 8 8 C 1.38881 * 120.01869 * 0.24764 * 7 6 5 9 9 N 1.40112 * 120.00335 * 179.72540 * 8 7 6 10 10 C 1.34783 * 119.99507 * 33.29916 * 9 8 7 11 11 O 1.21593 * 120.00121 * 5.31719 * 10 9 8 12 12 N 1.34771 * 119.99915 * 185.31076 * 10 9 8 13 13 C 1.46498 * 120.00101 * 180.02562 * 12 10 9 14 14 H 1.08991 * 109.47400 * 325.00428 * 13 12 10 15 15 C 1.50701 * 109.47064 * 205.00307 * 13 12 10 16 16 H 1.08002 * 120.00288 * 0.02562 * 15 13 12 17 17 C 1.37882 * 119.99944 * 179.97438 * 15 13 12 18 18 N 1.31508 * 120.00038 * 180.02562 * 17 15 13 19 19 Si 1.86800 * 119.99973 * 0.02562 * 17 15 13 20 20 H 1.48506 * 109.46943 * 89.99781 * 19 17 15 21 21 H 1.48497 * 109.47209 * 210.00017 * 19 17 15 22 22 H 1.48500 * 109.47081 * 330.00284 * 19 17 15 23 23 C 1.53004 * 109.46892 * 85.00821 * 13 12 10 24 24 C 1.53003 * 109.46486 * 294.99712 * 23 13 12 25 25 C 1.38855 * 119.99900 * 359.49609 * 8 7 6 26 26 C 1.38043 * 119.97136 * 0.51167 * 25 8 7 27 27 C 1.50671 * 120.12525 * 179.71609 * 26 25 8 28 28 C 1.52898 * 109.53717 * 146.04358 * 27 26 25 29 29 C 1.34554 * 119.78285 * 269.97658 * 4 3 2 30 30 O 1.21294 * 119.61785 * 0.82198 * 29 4 3 31 31 H 1.08993 * 109.47094 * 300.00456 * 1 2 3 32 32 H 1.08999 * 109.46816 * 60.00227 * 1 2 3 33 33 H 1.08993 * 109.47428 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47399 * 239.99571 * 2 1 3 35 35 H 1.08999 * 109.46816 * 119.99773 * 2 1 3 36 36 H 1.09001 * 109.47191 * 59.99444 * 3 2 1 37 37 H 1.09000 * 109.47452 * 300.00270 * 3 2 1 38 38 H 1.08000 * 120.00494 * 0.02562 * 6 5 4 39 39 H 1.08006 * 119.99246 * 179.97438 * 7 6 5 40 40 H 0.96996 * 120.00788 * 213.29634 * 9 8 7 41 41 H 0.97005 * 120.00170 * 0.02562 * 12 10 9 42 42 H 0.96998 * 120.00359 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.47170 * 54.99920 * 23 13 12 44 44 H 1.09001 * 109.46830 * 175.00004 * 23 13 12 45 45 H 1.09001 * 109.47240 * 299.99644 * 24 23 13 46 46 H 1.08991 * 109.47269 * 60.00427 * 24 23 13 47 47 H 1.09009 * 109.46506 * 180.02562 * 24 23 13 48 48 H 1.08000 * 120.01540 * 180.25102 * 25 8 7 49 49 H 1.09008 * 109.46205 * 266.06168 * 27 26 25 50 50 H 1.09005 * 109.46378 * 26.03083 * 27 26 25 51 51 H 1.09008 * 109.39640 * 168.78723 * 28 27 26 52 52 H 1.09002 * 109.39871 * 288.51717 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.2009 1.4423 -1.2144 6 6 3.5587 1.8232 -2.3854 7 6 4.2472 1.8215 -3.5817 8 6 5.5804 1.4342 -3.6156 9 7 6.2774 1.4271 -4.8310 10 6 5.9901 2.3424 -5.7778 11 8 5.1961 3.2326 -5.5418 12 7 6.5830 2.2710 -6.9860 13 6 6.2712 3.2662 -8.0149 14 1 5.2231 3.5546 -7.9357 15 6 6.5286 2.6771 -9.3779 16 1 6.8880 1.6627 -9.4687 17 6 6.3042 3.4328 -10.5091 18 7 6.5282 2.9186 -11.6986 19 14 5.6818 5.1871 -10.3521 20 1 6.8371 6.1159 -10.2624 21 1 4.8622 5.5299 -11.5420 22 1 4.8516 5.3100 -9.1271 23 6 7.1558 4.4988 -7.8168 24 6 6.8061 5.1688 -6.4864 25 6 6.2242 1.0585 -2.4440 26 6 5.5354 1.0601 -1.2477 27 6 6.2288 0.6469 0.0246 28 6 5.6775 1.4616 1.1951 29 6 4.1729 1.4431 1.1687 30 8 3.5552 1.4286 2.2124 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6767 1.9564 -0.8899 38 1 2.5208 2.1206 -2.3599 39 1 3.7476 2.1173 -4.4925 40 1 6.9665 0.7636 -4.9912 41 1 7.2162 1.5607 -7.1743 42 1 6.3707 3.4503 -12.4944 43 1 8.2030 4.1968 -7.8074 44 1 6.9876 5.2016 -8.6328 45 1 5.7589 5.4709 -6.4959 46 1 6.9743 4.4661 -5.6705 47 1 7.4360 6.0473 -6.3455 48 1 7.2621 0.7611 -2.4694 49 1 6.0535 -0.4136 0.2059 50 1 7.2997 0.8268 -0.0704 51 1 6.0285 1.0310 2.1330 52 1 6.0283 2.4907 1.1170 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158654918.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:00 Heat of formation + Delta-G solvation = -39.106743 kcal Electronic energy + Delta-G solvation = -32423.230064 eV Core-core repulsion = 28194.461347 eV Total energy + Delta-G solvation = -4228.768716 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.43029 -40.18060 -38.63467 -36.60547 -35.86093 -34.93434 -33.81810 -33.11284 -32.37355 -31.41993 -30.27641 -28.64969 -27.35562 -27.02080 -24.66020 -23.30710 -22.83679 -22.52291 -21.56817 -21.03119 -19.89566 -19.17471 -18.41197 -17.96864 -17.15282 -16.93147 -16.29414 -16.11456 -15.63320 -15.34788 -15.03543 -14.81641 -14.54571 -14.34153 -14.19949 -13.99803 -13.81618 -13.56783 -13.48032 -13.09496 -12.98345 -12.81792 -12.58225 -12.36335 -12.25843 -12.09520 -11.96863 -11.89650 -11.72301 -11.71827 -11.26021 -11.12619 -10.96466 -10.92980 -10.74777 -10.66698 -10.13916 -9.96921 -9.78204 -9.44988 -9.31999 -9.26543 -8.92348 -8.80634 -8.18119 -7.54559 -6.25511 -4.28417 1.07673 1.21572 2.30907 2.52932 2.99566 3.20519 3.32907 3.37514 3.43878 3.84061 4.09434 4.27512 4.36063 4.43407 4.57740 4.64890 4.67811 4.76322 4.85630 4.88501 5.03409 5.08275 5.14213 5.17148 5.22769 5.36531 5.38337 5.45800 5.47729 5.56950 5.70647 5.74579 5.80213 5.83577 5.94536 5.97901 6.00363 6.09665 6.13939 6.28717 6.36057 6.49050 6.60853 6.67118 6.78275 6.89611 6.96503 7.08410 7.14663 7.25170 7.43290 7.47385 7.71552 8.21520 8.54793 8.73106 9.02177 9.35222 10.86443 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.017211 B = 0.002152 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.481962 B =13005.119281 C =13631.903552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.103 3.897 4 N -0.547 5.547 5 C 0.131 3.869 6 C -0.128 4.128 7 C -0.090 4.090 8 C 0.167 3.833 9 N -0.695 5.695 10 C 0.694 3.306 11 O -0.578 6.578 12 N -0.711 5.711 13 C 0.260 3.740 14 H 0.050 0.950 15 C -0.536 4.536 16 H 0.080 0.920 17 C 0.079 3.921 18 N -0.891 5.891 19 Si 0.883 3.117 20 H -0.275 1.275 21 H -0.294 1.294 22 H -0.259 1.259 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.120 4.120 26 C -0.104 4.104 27 C -0.073 4.073 28 C -0.137 4.137 29 C 0.518 3.482 30 O -0.534 6.534 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.130 0.870 39 H 0.145 0.855 40 H 0.404 0.596 41 H 0.392 0.608 42 H 0.268 0.732 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.030 0.970 48 H 0.130 0.870 49 H 0.081 0.919 50 H 0.090 0.910 51 H 0.106 0.894 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.497 -6.362 23.315 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.019 4.019 4 N -0.271 5.271 5 C 0.037 3.963 6 C -0.149 4.149 7 C -0.111 4.111 8 C 0.070 3.930 9 N -0.342 5.342 10 C 0.395 3.605 11 O -0.455 6.455 12 N -0.362 5.362 13 C 0.156 3.844 14 H 0.068 0.932 15 C -0.574 4.574 16 H 0.098 0.902 17 C -0.125 4.125 18 N -0.528 5.528 19 Si 0.712 3.288 20 H -0.202 1.202 21 H -0.222 1.222 22 H -0.184 1.184 23 C -0.179 4.179 24 C -0.199 4.199 25 C -0.142 4.142 26 C -0.107 4.107 27 C -0.110 4.110 28 C -0.177 4.177 29 C 0.308 3.692 30 O -0.410 6.410 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.148 0.852 39 H 0.163 0.837 40 H 0.239 0.761 41 H 0.226 0.774 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.049 0.951 48 H 0.148 0.852 49 H 0.099 0.901 50 H 0.109 0.891 51 H 0.125 0.875 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.579 -5.482 23.822 24.705 hybrid contribution 0.474 0.348 -0.472 0.754 sum -3.104 -5.134 23.350 24.108 Atomic orbital electron populations 1.21683 0.94746 1.02161 1.02079 1.21839 0.96470 0.96494 1.02777 1.21775 0.77970 0.98110 1.04026 1.45473 1.07112 1.69833 1.04642 1.17567 0.91604 1.01652 0.85471 1.20702 1.00575 1.02745 0.90866 1.21126 0.92441 0.98824 0.98715 1.17442 0.90867 1.00013 0.84654 1.42820 1.41716 1.34965 1.14738 1.16065 0.82025 0.81590 0.80824 1.90906 1.38676 1.35888 1.80069 1.45456 1.46505 1.32945 1.11254 1.19073 0.95699 0.84265 0.85372 0.93188 1.21029 1.46954 1.01606 0.87825 0.90193 1.24819 0.94330 0.98340 0.94973 1.69858 1.47777 1.37451 0.97704 0.86907 0.79219 0.84894 0.77739 1.20231 1.22164 1.18380 1.22315 1.00941 0.98580 0.96041 1.21850 1.00781 0.99008 0.98256 1.20484 0.99518 1.04394 0.89779 1.19146 0.92608 1.03734 0.95226 1.20382 1.00420 1.00027 0.90206 1.21691 0.91003 1.03795 1.01202 1.20728 0.90824 0.75038 0.82598 1.90720 1.70130 1.48769 1.31416 0.92468 0.92361 0.92281 0.91453 0.91577 0.89246 0.89519 0.85246 0.83697 0.76107 0.77436 0.92227 0.92347 0.92754 0.92865 0.92931 0.95133 0.85177 0.90054 0.89134 0.87544 0.87944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.14 -1.16 6.26 -26.73 -0.17 -1.33 16 3 C 0.10 0.95 5.14 -4.04 -0.02 0.93 16 4 N -0.55 -5.74 2.69 -113.57 -0.31 -6.05 16 5 C 0.13 1.41 6.33 -83.65 -0.53 0.88 16 6 C -0.13 -1.46 9.33 -39.42 -0.37 -1.83 16 7 C -0.09 -1.21 8.65 -39.42 -0.34 -1.55 16 8 C 0.17 2.08 6.28 -83.61 -0.53 1.56 16 9 N -0.69 -8.90 5.35 -14.18 -0.08 -8.98 16 10 C 0.69 11.96 6.87 -86.92 -0.60 11.37 16 11 O -0.58 -11.71 11.16 5.28 0.06 -11.65 16 12 N -0.71 -12.94 5.03 -59.81 -0.30 -13.24 16 13 C 0.26 5.84 1.83 -69.08 -0.13 5.71 16 14 H 0.05 1.25 6.63 -51.93 -0.34 0.91 16 15 C -0.54 -13.90 9.31 -34.44 -0.32 -14.22 16 16 H 0.08 2.18 7.98 -52.49 -0.42 1.76 16 17 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 18 N -0.89 -25.77 13.96 55.43 0.77 -25.00 16 19 Si 0.88 21.19 24.41 -169.99 -4.15 17.04 16 20 H -0.28 -6.43 6.83 56.52 0.39 -6.04 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.26 -6.15 6.53 56.52 0.37 -5.78 16 23 C -0.14 -2.99 5.11 -26.73 -0.14 -3.13 16 24 C -0.14 -2.78 8.51 37.16 0.32 -2.46 16 25 C -0.12 -1.18 9.60 -39.42 -0.38 -1.56 16 26 C -0.10 -1.00 5.66 -104.48 -0.59 -1.59 16 27 C -0.07 -0.51 5.99 -27.95 -0.17 -0.67 16 28 C -0.14 -1.06 6.07 -28.04 -0.17 -1.23 16 29 C 0.52 5.73 7.46 -11.19 -0.08 5.65 16 30 O -0.53 -7.46 16.61 5.54 0.09 -7.37 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.88 7.40 -51.93 -0.38 0.49 16 37 H 0.09 0.69 5.81 -51.93 -0.30 0.39 16 38 H 0.13 1.27 6.01 -52.49 -0.32 0.96 16 39 H 0.15 2.26 6.41 -52.48 -0.34 1.92 16 40 H 0.40 3.86 8.84 -40.82 -0.36 3.50 16 41 H 0.39 6.20 8.56 -40.82 -0.35 5.85 16 42 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.05 1.23 3.22 -51.93 -0.17 1.07 16 45 H 0.05 1.11 7.84 -51.93 -0.41 0.70 16 46 H 0.05 1.02 5.64 -51.93 -0.29 0.72 16 47 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 48 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 49 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 50 H 0.09 0.46 8.06 -51.93 -0.42 0.04 16 51 H 0.11 0.67 8.14 -51.92 -0.42 0.25 16 52 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 403.63 15.07 6.08 6.08 Total: -1.00 -32.48 403.63 -9.69 -42.17 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -7.93 Total: 9.06 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -3.94 Total: -2.06 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.09 Total: -53.27 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.15 Total: -19.02 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.15 Total: 17.04 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.48 -9.69 -42.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158654918.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.061 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds