Wall clock time and date at job start Tue Mar 31 2020 05:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47408 * 2 1 4 4 N 1.46501 * 109.47502 * 179.97438 * 3 2 1 5 5 C 1.40019 * 119.77510 * 90.00188 * 4 3 2 6 6 C 1.38874 * 120.12194 * 18.49081 * 5 4 3 7 7 C 1.38030 * 119.98784 * 180.02562 * 6 5 4 8 8 C 1.38881 * 120.01869 * 0.24764 * 7 6 5 9 9 N 1.40112 * 120.00335 * 179.72540 * 8 7 6 10 10 C 1.34783 * 119.99507 * 33.29916 * 9 8 7 11 11 O 1.21593 * 120.00121 * 5.31719 * 10 9 8 12 12 N 1.34771 * 119.99915 * 185.31076 * 10 9 8 13 13 C 1.46498 * 120.00101 * 180.02562 * 12 10 9 14 14 H 1.08991 * 109.47400 * 325.00428 * 13 12 10 15 15 C 1.50701 * 109.47064 * 205.00307 * 13 12 10 16 16 H 1.08002 * 120.00288 * 0.02562 * 15 13 12 17 17 C 1.37882 * 119.99944 * 179.97438 * 15 13 12 18 18 N 1.31508 * 120.00038 * 180.02562 * 17 15 13 19 19 Si 1.86800 * 119.99973 * 0.02562 * 17 15 13 20 20 H 1.48506 * 109.46943 * 89.99781 * 19 17 15 21 21 H 1.48497 * 109.47209 * 210.00017 * 19 17 15 22 22 H 1.48500 * 109.47081 * 330.00284 * 19 17 15 23 23 C 1.53004 * 109.46892 * 85.00821 * 13 12 10 24 24 C 1.53003 * 109.46486 * 294.99712 * 23 13 12 25 25 C 1.38855 * 119.99900 * 359.49609 * 8 7 6 26 26 C 1.38043 * 119.97136 * 0.51167 * 25 8 7 27 27 C 1.50671 * 120.12525 * 179.71609 * 26 25 8 28 28 C 1.52898 * 109.53717 * 146.04358 * 27 26 25 29 29 C 1.34554 * 119.78285 * 269.97658 * 4 3 2 30 30 O 1.21294 * 119.61785 * 0.82198 * 29 4 3 31 31 H 1.08993 * 109.47094 * 300.00456 * 1 2 3 32 32 H 1.08999 * 109.46816 * 60.00227 * 1 2 3 33 33 H 1.08993 * 109.47428 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47399 * 239.99571 * 2 1 3 35 35 H 1.08999 * 109.46816 * 119.99773 * 2 1 3 36 36 H 1.09001 * 109.47191 * 59.99444 * 3 2 1 37 37 H 1.09000 * 109.47452 * 300.00270 * 3 2 1 38 38 H 1.08000 * 120.00494 * 0.02562 * 6 5 4 39 39 H 1.08006 * 119.99246 * 179.97438 * 7 6 5 40 40 H 0.96996 * 120.00788 * 213.29634 * 9 8 7 41 41 H 0.97005 * 120.00170 * 0.02562 * 12 10 9 42 42 H 0.96998 * 120.00359 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.47170 * 54.99920 * 23 13 12 44 44 H 1.09001 * 109.46830 * 175.00004 * 23 13 12 45 45 H 1.09001 * 109.47240 * 299.99644 * 24 23 13 46 46 H 1.08991 * 109.47269 * 60.00427 * 24 23 13 47 47 H 1.09009 * 109.46506 * 180.02562 * 24 23 13 48 48 H 1.08000 * 120.01540 * 180.25102 * 25 8 7 49 49 H 1.09008 * 109.46205 * 266.06168 * 27 26 25 50 50 H 1.09005 * 109.46378 * 26.03083 * 27 26 25 51 51 H 1.09008 * 109.39640 * 168.78723 * 28 27 26 52 52 H 1.09002 * 109.39871 * 288.51717 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.2009 1.4423 -1.2144 6 6 3.5587 1.8232 -2.3854 7 6 4.2472 1.8215 -3.5817 8 6 5.5804 1.4342 -3.6156 9 7 6.2774 1.4271 -4.8310 10 6 5.9901 2.3424 -5.7778 11 8 5.1961 3.2326 -5.5418 12 7 6.5830 2.2710 -6.9860 13 6 6.2712 3.2662 -8.0149 14 1 5.2231 3.5546 -7.9357 15 6 6.5286 2.6771 -9.3779 16 1 6.8880 1.6627 -9.4687 17 6 6.3042 3.4328 -10.5091 18 7 6.5282 2.9186 -11.6986 19 14 5.6818 5.1871 -10.3521 20 1 6.8371 6.1159 -10.2624 21 1 4.8622 5.5299 -11.5420 22 1 4.8516 5.3100 -9.1271 23 6 7.1558 4.4988 -7.8168 24 6 6.8061 5.1688 -6.4864 25 6 6.2242 1.0585 -2.4440 26 6 5.5354 1.0601 -1.2477 27 6 6.2288 0.6469 0.0246 28 6 5.6775 1.4616 1.1951 29 6 4.1729 1.4431 1.1687 30 8 3.5552 1.4286 2.2124 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6767 1.9564 -0.8899 38 1 2.5208 2.1206 -2.3599 39 1 3.7476 2.1173 -4.4925 40 1 6.9665 0.7636 -4.9912 41 1 7.2162 1.5607 -7.1743 42 1 6.3707 3.4503 -12.4944 43 1 8.2030 4.1968 -7.8074 44 1 6.9876 5.2016 -8.6328 45 1 5.7589 5.4709 -6.4959 46 1 6.9743 4.4661 -5.6705 47 1 7.4360 6.0473 -6.3455 48 1 7.2621 0.7611 -2.4694 49 1 6.0535 -0.4136 0.2059 50 1 7.2997 0.8268 -0.0704 51 1 6.0285 1.0310 2.1330 52 1 6.0283 2.4907 1.1170 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158654918.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:58 Heat of formation + Delta-G solvation = -59.805998 kcal Electronic energy + Delta-G solvation = -32424.127651 eV Core-core repulsion = 28194.461347 eV Total energy + Delta-G solvation = -4229.666303 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.27632 -41.40943 -39.66900 -37.75011 -36.96513 -36.06529 -34.89808 -34.31053 -33.84401 -32.93239 -31.07133 -29.86348 -28.90463 -27.75299 -25.40350 -24.77957 -23.93349 -23.55806 -22.64423 -22.05401 -21.43359 -20.24711 -19.68694 -18.87380 -18.31160 -18.03957 -17.71593 -17.26429 -16.88960 -16.44289 -16.06834 -15.96086 -15.61372 -15.46256 -15.10234 -15.02736 -14.96378 -14.75944 -14.54903 -14.42115 -14.03417 -13.85291 -13.76513 -13.62986 -13.44415 -13.06084 -13.00403 -12.93210 -12.77621 -12.73261 -12.53174 -12.42211 -12.38890 -11.96645 -11.85572 -11.69486 -11.66306 -11.36779 -11.21347 -11.04913 -10.96372 -10.83986 -10.32957 -9.79583 -9.71721 -8.48830 -8.36396 -6.41474 0.17349 0.37392 1.28895 1.37404 1.45234 1.46813 1.73327 1.81153 2.21898 2.27585 2.84561 3.00127 3.33932 3.43156 3.66207 3.74774 3.93244 3.96371 4.04528 4.14492 4.27403 4.27669 4.32324 4.33598 4.35846 4.41131 4.49380 4.50216 4.62253 4.79541 4.81624 4.83940 4.89870 4.93920 4.97052 5.03526 5.07275 5.09193 5.13233 5.14843 5.21859 5.24884 5.32833 5.40252 5.43893 5.50828 5.57108 5.59355 5.69173 5.98137 6.04134 6.30928 6.33475 6.61821 6.89025 7.17934 7.27426 7.68944 8.78644 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.017211 B = 0.002152 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.481962 B =13005.119281 C =13631.903552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.098 3.902 4 N -0.549 5.549 5 C 0.127 3.873 6 C -0.131 4.131 7 C -0.111 4.111 8 C 0.146 3.854 9 N -0.676 5.676 10 C 0.696 3.304 11 O -0.609 6.609 12 N -0.711 5.711 13 C 0.269 3.731 14 H 0.023 0.977 15 C -0.531 4.531 16 H 0.058 0.942 17 C 0.030 3.970 18 N -0.934 5.934 19 Si 0.934 3.066 20 H -0.261 1.261 21 H -0.296 1.296 22 H -0.259 1.259 23 C -0.138 4.138 24 C -0.130 4.130 25 C -0.104 4.104 26 C -0.100 4.100 27 C -0.068 4.068 28 C -0.134 4.134 29 C 0.510 3.490 30 O -0.570 6.570 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.136 0.864 39 H 0.115 0.885 40 H 0.422 0.578 41 H 0.405 0.595 42 H 0.269 0.731 43 H 0.069 0.931 44 H 0.042 0.958 45 H 0.035 0.965 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.164 0.836 49 H 0.092 0.908 50 H 0.121 0.879 51 H 0.123 0.877 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.877 -6.448 25.573 26.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C -0.024 4.024 4 N -0.271 5.271 5 C 0.033 3.967 6 C -0.152 4.152 7 C -0.133 4.133 8 C 0.050 3.950 9 N -0.325 5.325 10 C 0.397 3.603 11 O -0.489 6.489 12 N -0.363 5.363 13 C 0.164 3.836 14 H 0.041 0.959 15 C -0.569 4.569 16 H 0.076 0.924 17 C -0.169 4.169 18 N -0.573 5.573 19 Si 0.762 3.238 20 H -0.186 1.186 21 H -0.223 1.223 22 H -0.184 1.184 23 C -0.176 4.176 24 C -0.187 4.187 25 C -0.125 4.125 26 C -0.103 4.103 27 C -0.105 4.105 28 C -0.173 4.173 29 C 0.301 3.699 30 O -0.449 6.449 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.154 0.846 39 H 0.133 0.867 40 H 0.260 0.740 41 H 0.240 0.760 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.182 0.818 49 H 0.110 0.890 50 H 0.140 0.860 51 H 0.141 0.859 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.931 -5.614 26.115 26.781 hybrid contribution -0.084 0.266 -1.067 1.103 sum -2.015 -5.348 25.047 25.691 Atomic orbital electron populations 1.21673 0.93522 1.02729 1.02484 1.21750 0.97508 0.95681 1.01834 1.21871 0.77786 0.98665 1.04058 1.45584 1.07547 1.69342 1.04639 1.17708 0.92333 1.01530 0.85124 1.20715 1.00998 1.02821 0.90642 1.20957 0.93407 1.00639 0.98263 1.17636 0.90702 1.01475 0.85160 1.42485 1.41804 1.34198 1.14023 1.16085 0.81360 0.81928 0.80937 1.90895 1.39859 1.37490 1.80639 1.45116 1.47281 1.32806 1.11130 1.18644 0.94543 0.85638 0.84797 0.95884 1.21279 1.45335 1.00681 0.89589 0.92388 1.25510 0.94816 1.01836 0.94779 1.69966 1.49816 1.39008 0.98487 0.86069 0.79120 0.81238 0.77380 1.18640 1.22350 1.18352 1.22227 1.01135 0.97640 0.96636 1.21714 1.00103 0.99798 0.97081 1.20747 1.00807 1.02520 0.88423 1.19531 0.92036 1.02213 0.96488 1.20484 1.01723 1.00323 0.87978 1.21772 0.88182 1.04813 1.02528 1.21456 0.92358 0.74053 0.82000 1.90703 1.71193 1.50521 1.32513 0.92340 0.91683 0.91640 0.91750 0.92970 0.90093 0.88546 0.84598 0.86691 0.74027 0.76022 0.92131 0.91223 0.93956 0.94609 0.92740 0.92685 0.81814 0.88973 0.86036 0.85866 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.21 16 2 C -0.13 -2.14 6.26 30.59 0.19 -1.95 16 3 C 0.10 1.77 5.14 86.38 0.44 2.22 16 4 N -0.55 -10.92 2.69 -631.74 -1.70 -12.62 16 5 C 0.13 2.53 6.33 38.13 0.24 2.77 16 6 C -0.13 -2.93 9.33 22.37 0.21 -2.73 16 7 C -0.11 -2.98 8.65 22.37 0.19 -2.79 16 8 C 0.15 3.40 6.28 38.12 0.24 3.63 16 9 N -0.68 -16.19 5.35 -317.03 -1.70 -17.88 16 10 C 0.70 23.53 6.87 179.05 1.23 24.76 16 11 O -0.61 -24.80 11.16 -4.01 -0.04 -24.84 16 12 N -0.71 -25.50 5.03 -461.41 -2.32 -27.81 16 13 C 0.27 12.09 1.83 44.25 0.08 12.17 16 14 H 0.02 1.18 6.63 -2.39 -0.02 1.16 16 15 C -0.53 -27.85 9.31 25.60 0.24 -27.61 16 16 H 0.06 3.23 7.98 -2.91 -0.02 3.21 16 17 C 0.03 1.67 5.45 84.66 0.46 2.13 16 18 N -0.93 -54.98 13.96 21.45 0.30 -54.68 16 19 Si 0.93 43.90 24.41 68.60 1.67 45.57 16 20 H -0.26 -11.54 6.83 99.48 0.68 -10.86 16 21 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 22 H -0.26 -12.06 6.53 99.48 0.65 -11.41 16 23 C -0.14 -5.70 5.11 30.60 0.16 -5.54 16 24 C -0.13 -4.85 8.51 71.98 0.61 -4.24 16 25 C -0.10 -1.68 9.60 22.37 0.21 -1.46 16 26 C -0.10 -1.59 5.66 -19.77 -0.11 -1.70 16 27 C -0.07 -0.65 5.99 29.80 0.18 -0.47 16 28 C -0.13 -1.63 6.07 29.75 0.18 -1.45 16 29 C 0.51 10.55 7.46 87.63 0.65 11.20 16 30 O -0.57 -15.65 16.61 -3.07 -0.05 -15.70 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.61 7.40 -2.39 -0.02 1.59 16 37 H 0.10 1.52 5.81 -2.39 -0.01 1.51 16 38 H 0.14 2.70 6.01 -2.91 -0.02 2.68 16 39 H 0.12 3.77 6.41 -2.91 -0.02 3.75 16 40 H 0.42 6.97 8.84 -92.71 -0.82 6.15 16 41 H 0.40 12.40 8.56 -92.70 -0.79 11.61 16 42 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 43 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.04 1.85 3.22 -2.39 -0.01 1.85 16 45 H 0.03 1.44 7.84 -2.39 -0.02 1.43 16 46 H 0.05 2.01 5.64 -2.39 -0.01 1.99 16 47 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 48 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 49 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 50 H 0.12 0.51 8.06 -2.38 -0.02 0.49 16 51 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 52 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -72.32 403.63 1.56 -70.77 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -0.73 Total: 29.47 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 6.13 Total: 7.73 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -5.42 Total: -113.00 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -0.10 Total: -40.55 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.67 Total: 45.57 kcal Total: -72.32 1.56 -70.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158654918.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.962 kcal (2) G-P(sol) polarization free energy of solvation -72.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds