Wall clock time and date at job start Tue Mar 31 2020 05:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 N 1.46501 * 109.47336 * 180.02562 * 3 2 1 5 5 C 1.40015 * 119.77795 * 269.98229 * 4 3 2 6 6 C 1.38878 * 120.11290 * 18.77300 * 5 4 3 7 7 C 1.38035 * 119.98432 * 180.23291 * 6 5 4 8 8 C 1.38883 * 120.01949 * 359.48644 * 7 6 5 9 9 N 1.40107 * 120.00184 * 180.27185 * 8 7 6 10 10 C 1.34774 * 120.00492 * 324.90780 * 9 8 7 11 11 O 1.21593 * 119.99538 * 4.61396 * 10 9 8 12 12 N 1.34772 * 120.00235 * 184.61499 * 10 9 8 13 13 C 1.46503 * 120.00135 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.47050 * 35.00338 * 13 12 10 15 15 C 1.50694 * 109.47265 * 154.99795 * 13 12 10 16 16 H 1.08007 * 119.99991 * 0.02562 * 15 13 12 17 17 C 1.37872 * 120.00290 * 180.02562 * 15 13 12 18 18 N 1.31513 * 120.00154 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 120.00193 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47116 * 89.99777 * 19 17 15 21 21 H 1.48495 * 109.47085 * 209.99736 * 19 17 15 22 22 H 1.48501 * 109.47156 * 329.99847 * 19 17 15 23 23 C 1.52995 * 109.47486 * 275.00308 * 13 12 10 24 24 C 1.53006 * 109.47113 * 64.99538 * 23 13 12 25 25 C 1.38853 * 119.99491 * 0.25169 * 8 7 6 26 26 C 1.38041 * 119.98085 * 0.02562 * 25 8 7 27 27 C 1.50663 * 120.12997 * 179.97438 * 26 25 8 28 28 C 1.52893 * 109.53834 * 146.01955 * 27 26 25 29 29 C 1.34560 * 119.77547 * 89.99641 * 4 3 2 30 30 O 1.21290 * 119.61952 * 0.79183 * 29 4 3 31 31 H 1.09002 * 109.47094 * 59.99739 * 1 2 3 32 32 H 1.09002 * 109.47114 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47146 * 299.99921 * 1 2 3 34 34 H 1.08999 * 109.47011 * 239.99716 * 2 1 3 35 35 H 1.08998 * 109.47018 * 119.99760 * 2 1 3 36 36 H 1.08999 * 109.47455 * 59.99987 * 3 2 1 37 37 H 1.09002 * 109.47394 * 300.00077 * 3 2 1 38 38 H 1.07996 * 120.00826 * 359.97438 * 6 5 4 39 39 H 1.07998 * 119.99450 * 179.76262 * 7 6 5 40 40 H 0.97007 * 119.99764 * 144.90599 * 9 8 7 41 41 H 0.97003 * 120.00075 * 359.97438 * 12 10 9 42 42 H 0.96993 * 120.00612 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.46962 * 184.99869 * 23 13 12 44 44 H 1.09002 * 109.46941 * 305.00081 * 23 13 12 45 45 H 1.09002 * 109.46774 * 60.00440 * 24 23 13 46 46 H 1.08997 * 109.46925 * 180.02562 * 24 23 13 47 47 H 1.08995 * 109.47094 * 300.00657 * 24 23 13 48 48 H 1.08008 * 120.00815 * 180.02562 * 25 8 7 49 49 H 1.09006 * 109.45697 * 266.04107 * 27 26 25 50 50 H 1.09000 * 109.46439 * 26.00755 * 27 26 25 51 51 H 1.09004 * 109.40175 * 168.78057 * 28 27 26 52 52 H 1.09001 * 109.40082 * 288.51394 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2009 1.4428 1.2144 6 6 3.5602 1.0563 2.3843 7 6 4.2474 1.0622 3.5814 8 6 5.5823 1.4441 3.6145 9 7 6.2810 1.4445 4.8289 10 6 5.6476 1.7777 5.9708 11 8 4.4515 1.9964 5.9610 12 7 6.3398 1.8685 7.1236 13 6 5.6513 2.2313 8.3649 14 1 4.6476 1.8063 8.3612 15 6 6.4210 1.6913 9.5425 16 1 7.3322 1.1340 9.3825 17 6 5.9621 1.9087 10.8243 18 7 4.8523 2.5869 11.0193 19 14 6.9166 1.2400 12.2842 20 1 7.9069 2.2513 12.7334 21 1 5.9772 0.9400 13.3944 22 1 7.6247 -0.0029 11.8853 23 6 5.5596 3.7548 8.4707 24 6 4.6739 4.2919 7.3446 25 6 6.2244 1.8253 2.4438 26 6 5.5354 1.8250 1.2476 27 6 6.2287 2.2385 -0.0245 28 6 5.6771 1.4245 -1.1953 29 6 4.1727 1.4427 -1.1689 30 8 3.5549 1.4573 -2.2125 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6766 1.9564 -0.8900 38 1 2.5234 0.7553 2.3583 39 1 3.7482 0.7653 4.4920 40 1 7.2208 1.2048 4.8477 41 1 7.2939 1.6937 7.1315 42 1 4.5296 2.7402 11.9210 43 1 5.1277 4.0267 9.4339 44 1 6.5572 4.1857 8.3852 45 1 3.6763 3.8611 7.4302 46 1 4.6089 5.3774 7.4198 47 1 5.1057 4.0199 6.3816 48 1 7.2626 2.1220 2.4692 49 1 6.0536 3.2991 -0.2052 50 1 7.2995 2.0583 0.0703 51 1 6.0279 1.8554 -2.1331 52 1 6.0278 0.3953 -1.1178 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158655049.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:05 Heat of formation + Delta-G solvation = -48.466610 kcal Electronic energy + Delta-G solvation = -32364.427619 eV Core-core repulsion = 28135.253028 eV Total energy + Delta-G solvation = -4229.174590 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.37862 -40.03497 -38.52039 -36.51257 -35.72812 -34.77993 -33.69538 -33.01318 -32.34491 -30.87233 -30.21991 -28.51661 -27.04561 -26.75733 -24.61958 -23.40760 -22.70721 -22.40595 -21.67400 -20.80439 -19.56635 -19.11371 -18.24454 -17.86161 -17.03393 -16.90136 -16.11217 -15.86828 -15.34474 -15.21595 -15.02844 -14.76702 -14.40365 -14.32044 -14.20885 -13.79152 -13.70891 -13.49208 -13.26921 -13.06531 -12.70255 -12.65972 -12.40126 -12.38155 -12.25045 -11.87869 -11.76898 -11.67579 -11.55920 -11.28976 -11.20413 -11.01997 -10.99389 -10.87122 -10.53876 -10.34726 -10.22146 -10.09065 -9.68810 -9.44885 -9.24936 -9.07670 -8.83848 -8.55064 -7.94799 -7.46958 -6.16618 -4.26164 1.14186 1.28868 2.36159 2.57498 3.12901 3.21122 3.28848 3.31043 3.57760 3.94898 4.13707 4.28500 4.40760 4.51331 4.64103 4.66685 4.77610 4.87964 4.91941 4.93301 5.10194 5.15246 5.22861 5.25994 5.32457 5.37743 5.41935 5.47582 5.53773 5.62927 5.75695 5.80345 5.85873 5.89974 6.03584 6.18113 6.38080 6.39087 6.42512 6.45485 6.58257 6.65082 6.98064 7.02554 7.09802 7.21827 7.31403 7.34078 7.41579 7.60436 7.75528 7.82379 7.93975 8.14689 8.68858 8.79979 9.20232 9.42342 10.88698 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.017739 B = 0.002064 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.045598 B =13565.386134 C =14342.246743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.105 3.895 4 N -0.547 5.547 5 C 0.130 3.870 6 C -0.129 4.129 7 C -0.090 4.090 8 C 0.166 3.834 9 N -0.697 5.697 10 C 0.693 3.307 11 O -0.576 6.576 12 N -0.718 5.718 13 C 0.287 3.713 14 H 0.050 0.950 15 C -0.535 4.535 16 H 0.061 0.939 17 C 0.067 3.933 18 N -0.881 5.881 19 Si 0.901 3.099 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.128 4.128 24 C -0.135 4.135 25 C -0.121 4.121 26 C -0.105 4.105 27 C -0.073 4.073 28 C -0.136 4.136 29 C 0.518 3.482 30 O -0.535 6.535 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.130 0.870 39 H 0.151 0.849 40 H 0.402 0.598 41 H 0.386 0.614 42 H 0.265 0.735 43 H 0.099 0.901 44 H 0.030 0.970 45 H 0.049 0.951 46 H 0.021 0.979 47 H 0.038 0.962 48 H 0.129 0.871 49 H 0.081 0.919 50 H 0.090 0.910 51 H 0.106 0.894 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 -2.974 -21.406 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C -0.017 4.017 4 N -0.270 5.270 5 C 0.036 3.964 6 C -0.150 4.150 7 C -0.111 4.111 8 C 0.069 3.931 9 N -0.345 5.345 10 C 0.393 3.607 11 O -0.454 6.454 12 N -0.369 5.369 13 C 0.185 3.815 14 H 0.068 0.932 15 C -0.573 4.573 16 H 0.079 0.921 17 C -0.136 4.136 18 N -0.519 5.519 19 Si 0.729 3.271 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.167 4.167 24 C -0.192 4.192 25 C -0.143 4.143 26 C -0.108 4.108 27 C -0.111 4.111 28 C -0.176 4.176 29 C 0.308 3.692 30 O -0.411 6.411 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.147 0.853 39 H 0.168 0.832 40 H 0.237 0.763 41 H 0.218 0.782 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.049 0.951 45 H 0.069 0.931 46 H 0.040 0.960 47 H 0.057 0.943 48 H 0.147 0.853 49 H 0.100 0.900 50 H 0.108 0.892 51 H 0.124 0.876 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.032 -2.656 -21.741 21.902 hybrid contribution 1.433 -0.466 1.003 1.810 sum 1.402 -3.122 -20.738 21.018 Atomic orbital electron populations 1.21691 0.94715 1.02180 1.02137 1.21922 0.96586 0.96578 1.02897 1.21745 0.77863 0.97980 1.04072 1.45486 1.07116 1.69754 1.04642 1.17588 0.91521 1.01937 0.85393 1.20780 1.00528 1.02917 0.90761 1.21309 0.93657 0.97849 0.98320 1.17472 0.92470 0.98480 0.84670 1.42858 1.13870 1.72624 1.05171 1.16107 0.85832 0.78445 0.80281 1.90883 1.12849 1.56905 1.84761 1.45843 1.11427 1.71889 1.07737 1.18721 0.93721 0.91541 0.77532 0.93182 1.21214 1.09942 1.35636 0.90544 0.92108 1.24873 0.95011 0.94893 0.98857 1.69888 1.20807 1.39185 1.21971 0.86454 0.79578 0.79229 0.81864 1.20548 1.21059 1.19892 1.21958 0.97190 0.97700 0.99896 1.21811 1.00871 0.97444 0.99101 1.20505 1.00503 1.02603 0.90650 1.19143 0.92535 1.03912 0.95249 1.20377 1.00332 1.00132 0.90232 1.21679 0.91045 1.03668 1.01217 1.20724 0.90826 0.75067 0.82627 1.90716 1.70141 1.48843 1.31437 0.92477 0.92260 0.92287 0.91544 0.91242 0.89598 0.89207 0.85261 0.83194 0.76342 0.78228 0.92506 0.88278 0.95116 0.93144 0.96027 0.94292 0.85273 0.90046 0.89175 0.87590 0.88029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.14 -1.26 6.06 -26.73 -0.16 -1.42 16 3 C 0.11 1.03 4.68 -4.04 -0.02 1.01 16 4 N -0.55 -5.99 2.69 -113.58 -0.31 -6.30 16 5 C 0.13 1.47 6.32 -83.65 -0.53 0.94 16 6 C -0.13 -1.56 8.83 -39.42 -0.35 -1.91 16 7 C -0.09 -1.28 8.69 -39.42 -0.34 -1.63 16 8 C 0.17 2.20 6.30 -83.61 -0.53 1.67 16 9 N -0.70 -9.56 5.35 -14.18 -0.08 -9.63 16 10 C 0.69 12.75 6.98 -86.92 -0.61 12.14 16 11 O -0.58 -12.48 10.91 5.28 0.06 -12.42 16 12 N -0.72 -13.82 5.03 -59.82 -0.30 -14.12 16 13 C 0.29 6.87 2.24 -69.09 -0.15 6.72 16 14 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 15 C -0.53 -13.54 8.73 -34.44 -0.30 -13.84 16 16 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 17 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 18 N -0.88 -24.02 11.30 55.43 0.63 -23.39 16 19 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 C -0.13 -3.03 5.45 -26.73 -0.15 -3.17 16 24 C -0.13 -2.95 8.51 37.16 0.32 -2.64 16 25 C -0.12 -1.28 9.60 -39.43 -0.38 -1.66 16 26 C -0.11 -1.07 5.65 -104.48 -0.59 -1.66 16 27 C -0.07 -0.55 5.99 -27.96 -0.17 -0.71 16 28 C -0.14 -1.07 6.07 -28.05 -0.17 -1.24 16 29 C 0.52 5.87 7.46 -11.19 -0.08 5.79 16 30 O -0.53 -7.62 16.59 5.55 0.09 -7.53 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.62 6.85 -51.93 -0.36 0.27 16 36 H 0.09 0.78 7.13 -51.93 -0.37 0.41 16 37 H 0.09 0.93 7.37 -51.93 -0.38 0.55 16 38 H 0.13 1.38 5.71 -52.49 -0.30 1.08 16 39 H 0.15 2.49 6.22 -52.49 -0.33 2.16 16 40 H 0.40 4.15 8.84 -40.82 -0.36 3.79 16 41 H 0.39 6.33 8.56 -40.82 -0.35 5.98 16 42 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 44 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.04 0.84 5.64 -51.93 -0.29 0.54 16 48 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 49 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.09 0.47 8.06 -51.93 -0.42 0.06 16 51 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 52 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 408.65 15.07 6.16 6.16 Total: -1.00 -31.19 408.65 -10.74 -41.93 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -8.04 Total: 10.98 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -3.93 Total: -0.68 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.06 Total: -53.45 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: 0.15 Total: -19.95 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.19 -10.74 -41.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158655049.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.537 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds