Wall clock time and date at job start Tue Mar 31 2020 05:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 N 1.46501 * 109.47336 * 180.02562 * 3 2 1 5 5 C 1.40015 * 119.77795 * 269.98229 * 4 3 2 6 6 C 1.38878 * 120.11290 * 18.77300 * 5 4 3 7 7 C 1.38035 * 119.98432 * 180.23291 * 6 5 4 8 8 C 1.38883 * 120.01949 * 359.48644 * 7 6 5 9 9 N 1.40107 * 120.00184 * 180.27185 * 8 7 6 10 10 C 1.34774 * 120.00492 * 324.90780 * 9 8 7 11 11 O 1.21593 * 119.99538 * 4.61396 * 10 9 8 12 12 N 1.34772 * 120.00235 * 184.61499 * 10 9 8 13 13 C 1.46503 * 120.00135 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.47050 * 35.00338 * 13 12 10 15 15 C 1.50694 * 109.47265 * 154.99795 * 13 12 10 16 16 H 1.08007 * 119.99991 * 0.02562 * 15 13 12 17 17 C 1.37872 * 120.00290 * 180.02562 * 15 13 12 18 18 N 1.31513 * 120.00154 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 120.00193 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47116 * 89.99777 * 19 17 15 21 21 H 1.48495 * 109.47085 * 209.99736 * 19 17 15 22 22 H 1.48501 * 109.47156 * 329.99847 * 19 17 15 23 23 C 1.52995 * 109.47486 * 275.00308 * 13 12 10 24 24 C 1.53006 * 109.47113 * 64.99538 * 23 13 12 25 25 C 1.38853 * 119.99491 * 0.25169 * 8 7 6 26 26 C 1.38041 * 119.98085 * 0.02562 * 25 8 7 27 27 C 1.50663 * 120.12997 * 179.97438 * 26 25 8 28 28 C 1.52893 * 109.53834 * 146.01955 * 27 26 25 29 29 C 1.34560 * 119.77547 * 89.99641 * 4 3 2 30 30 O 1.21290 * 119.61952 * 0.79183 * 29 4 3 31 31 H 1.09002 * 109.47094 * 59.99739 * 1 2 3 32 32 H 1.09002 * 109.47114 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47146 * 299.99921 * 1 2 3 34 34 H 1.08999 * 109.47011 * 239.99716 * 2 1 3 35 35 H 1.08998 * 109.47018 * 119.99760 * 2 1 3 36 36 H 1.08999 * 109.47455 * 59.99987 * 3 2 1 37 37 H 1.09002 * 109.47394 * 300.00077 * 3 2 1 38 38 H 1.07996 * 120.00826 * 359.97438 * 6 5 4 39 39 H 1.07998 * 119.99450 * 179.76262 * 7 6 5 40 40 H 0.97007 * 119.99764 * 144.90599 * 9 8 7 41 41 H 0.97003 * 120.00075 * 359.97438 * 12 10 9 42 42 H 0.96993 * 120.00612 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.46962 * 184.99869 * 23 13 12 44 44 H 1.09002 * 109.46941 * 305.00081 * 23 13 12 45 45 H 1.09002 * 109.46774 * 60.00440 * 24 23 13 46 46 H 1.08997 * 109.46925 * 180.02562 * 24 23 13 47 47 H 1.08995 * 109.47094 * 300.00657 * 24 23 13 48 48 H 1.08008 * 120.00815 * 180.02562 * 25 8 7 49 49 H 1.09006 * 109.45697 * 266.04107 * 27 26 25 50 50 H 1.09000 * 109.46439 * 26.00755 * 27 26 25 51 51 H 1.09004 * 109.40175 * 168.78057 * 28 27 26 52 52 H 1.09001 * 109.40082 * 288.51394 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2009 1.4428 1.2144 6 6 3.5602 1.0563 2.3843 7 6 4.2474 1.0622 3.5814 8 6 5.5823 1.4441 3.6145 9 7 6.2810 1.4445 4.8289 10 6 5.6476 1.7777 5.9708 11 8 4.4515 1.9964 5.9610 12 7 6.3398 1.8685 7.1236 13 6 5.6513 2.2313 8.3649 14 1 4.6476 1.8063 8.3612 15 6 6.4210 1.6913 9.5425 16 1 7.3322 1.1340 9.3825 17 6 5.9621 1.9087 10.8243 18 7 4.8523 2.5869 11.0193 19 14 6.9166 1.2400 12.2842 20 1 7.9069 2.2513 12.7334 21 1 5.9772 0.9400 13.3944 22 1 7.6247 -0.0029 11.8853 23 6 5.5596 3.7548 8.4707 24 6 4.6739 4.2919 7.3446 25 6 6.2244 1.8253 2.4438 26 6 5.5354 1.8250 1.2476 27 6 6.2287 2.2385 -0.0245 28 6 5.6771 1.4245 -1.1953 29 6 4.1727 1.4427 -1.1689 30 8 3.5549 1.4573 -2.2125 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6766 1.9564 -0.8900 38 1 2.5234 0.7553 2.3583 39 1 3.7482 0.7653 4.4920 40 1 7.2208 1.2048 4.8477 41 1 7.2939 1.6937 7.1315 42 1 4.5296 2.7402 11.9210 43 1 5.1277 4.0267 9.4339 44 1 6.5572 4.1857 8.3852 45 1 3.6763 3.8611 7.4302 46 1 4.6089 5.3774 7.4198 47 1 5.1057 4.0199 6.3816 48 1 7.2626 2.1220 2.4692 49 1 6.0536 3.2991 -0.2052 50 1 7.2995 2.0583 0.0703 51 1 6.0279 1.8554 -2.1331 52 1 6.0278 0.3953 -1.1178 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158655049.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:03 Heat of formation + Delta-G solvation = -66.793288 kcal Electronic energy + Delta-G solvation = -32365.222323 eV Core-core repulsion = 28135.253028 eV Total energy + Delta-G solvation = -4229.969295 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.26895 -41.33501 -39.61823 -37.64129 -36.91179 -36.05265 -34.87847 -34.14635 -33.76816 -32.58315 -31.07426 -29.69846 -28.56355 -27.72346 -25.40594 -25.09450 -23.87841 -23.29860 -22.62009 -22.06496 -21.30470 -20.20408 -19.57862 -18.81591 -18.23820 -17.86056 -17.55838 -17.02135 -16.68856 -16.52026 -16.12141 -15.90910 -15.64442 -15.49824 -15.04556 -14.93434 -14.58313 -14.55716 -14.53485 -14.31709 -13.94240 -13.87749 -13.49823 -13.42606 -13.16445 -13.12052 -12.99714 -12.86343 -12.73728 -12.64238 -12.54465 -12.35194 -12.16553 -12.07842 -12.00394 -11.76965 -11.60216 -11.46697 -11.05475 -10.99107 -10.85527 -10.51367 -10.37181 -9.74979 -9.60354 -8.49297 -8.13667 -6.30432 0.18193 0.38270 1.46448 1.47052 1.48106 1.57319 1.74255 1.87954 2.29128 2.44520 2.85712 3.16135 3.37124 3.53669 3.68356 3.78079 3.90398 3.93701 4.06308 4.16055 4.30841 4.32163 4.38169 4.42298 4.52180 4.53210 4.58401 4.61021 4.78314 4.79314 4.82007 4.90066 4.93728 4.98258 5.06731 5.08785 5.10780 5.12465 5.23837 5.27319 5.32358 5.43222 5.47831 5.54428 5.58275 5.60572 5.65967 5.80916 5.91224 6.01659 6.20430 6.31922 6.35143 6.78316 6.89493 7.32799 7.38570 7.79427 8.91570 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.017739 B = 0.002064 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.045598 B =13565.386134 C =14342.246743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.101 3.899 4 N -0.549 5.549 5 C 0.127 3.873 6 C -0.132 4.132 7 C -0.113 4.113 8 C 0.144 3.856 9 N -0.677 5.677 10 C 0.692 3.308 11 O -0.613 6.613 12 N -0.716 5.716 13 C 0.297 3.703 14 H 0.000 1.000 15 C -0.545 4.545 16 H 0.073 0.927 17 C 0.016 3.984 18 N -0.915 5.915 19 Si 0.968 3.032 20 H -0.272 1.272 21 H -0.289 1.289 22 H -0.265 1.265 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.104 4.104 26 C -0.100 4.100 27 C -0.069 4.069 28 C -0.131 4.131 29 C 0.509 3.491 30 O -0.570 6.570 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.117 0.883 40 H 0.421 0.579 41 H 0.402 0.598 42 H 0.264 0.736 43 H 0.071 0.929 44 H 0.040 0.960 45 H 0.024 0.976 46 H 0.040 0.960 47 H 0.042 0.958 48 H 0.165 0.835 49 H 0.087 0.913 50 H 0.125 0.875 51 H 0.123 0.877 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.530 -2.935 -22.924 23.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C -0.020 4.020 4 N -0.271 5.271 5 C 0.033 3.967 6 C -0.153 4.153 7 C -0.134 4.134 8 C 0.048 3.952 9 N -0.326 5.326 10 C 0.393 3.607 11 O -0.493 6.493 12 N -0.368 5.368 13 C 0.194 3.806 14 H 0.018 0.982 15 C -0.584 4.584 16 H 0.091 0.909 17 C -0.184 4.184 18 N -0.553 5.553 19 Si 0.794 3.206 20 H -0.198 1.198 21 H -0.215 1.215 22 H -0.189 1.189 23 C -0.160 4.160 24 C -0.176 4.176 25 C -0.125 4.125 26 C -0.103 4.103 27 C -0.106 4.106 28 C -0.171 4.171 29 C 0.301 3.699 30 O -0.449 6.449 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.152 0.848 39 H 0.135 0.865 40 H 0.259 0.741 41 H 0.237 0.763 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.059 0.941 45 H 0.044 0.956 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.182 0.818 49 H 0.105 0.895 50 H 0.143 0.857 51 H 0.141 0.859 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.002 -2.639 -23.307 23.647 hybrid contribution 0.431 -0.499 1.349 1.501 sum 3.433 -3.138 -21.958 22.445 Atomic orbital electron populations 1.21680 0.93535 1.02748 1.02495 1.21839 0.97597 0.95758 1.02046 1.21810 0.77792 0.98524 1.03905 1.45602 1.07486 1.69355 1.04674 1.17722 0.92271 1.01683 0.85038 1.20758 1.00827 1.03084 0.90584 1.21103 0.94674 0.99840 0.97798 1.17671 0.92341 1.00042 0.85162 1.42475 1.14578 1.71643 1.03952 1.16189 0.85351 0.78153 0.81030 1.90877 1.14666 1.58273 1.85480 1.45425 1.12054 1.72469 1.06863 1.18237 0.91599 0.91478 0.79334 0.98228 1.21570 1.10239 1.35474 0.91082 0.90935 1.25734 0.95821 0.95154 1.01713 1.70044 1.22410 1.40463 1.22399 0.85400 0.78137 0.78906 0.78204 1.19756 1.21503 1.18905 1.21801 0.97653 0.97592 0.98965 1.21626 0.99047 0.98351 0.98591 1.20770 1.01821 1.00683 0.89192 1.19547 0.91927 1.02288 0.96570 1.20485 1.01878 1.00177 0.88018 1.21760 0.87981 1.04946 1.02371 1.21499 0.92454 0.74005 0.81933 1.90700 1.71225 1.50531 1.32487 0.92229 0.91597 0.91813 0.92799 0.91505 0.89148 0.89888 0.84844 0.86521 0.74094 0.76339 0.92657 0.91101 0.94085 0.95639 0.94054 0.93875 0.81765 0.89459 0.85699 0.85867 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 71.98 0.71 -1.43 16 2 C -0.13 -2.41 6.06 30.59 0.19 -2.22 16 3 C 0.10 2.00 4.68 86.38 0.40 2.40 16 4 N -0.55 -11.54 2.69 -631.76 -1.70 -13.25 16 5 C 0.13 2.72 6.32 38.14 0.24 2.96 16 6 C -0.13 -3.21 8.83 22.37 0.20 -3.01 16 7 C -0.11 -3.29 8.69 22.38 0.19 -3.10 16 8 C 0.14 3.63 6.30 38.12 0.24 3.87 16 9 N -0.68 -17.68 5.35 -317.05 -1.70 -19.37 16 10 C 0.69 25.62 6.98 179.06 1.25 26.87 16 11 O -0.61 -27.65 10.91 -4.01 -0.04 -27.70 16 12 N -0.72 -27.49 5.03 -461.42 -2.32 -29.80 16 13 C 0.30 14.62 2.24 44.24 0.10 14.72 16 14 H 0.00 -0.01 7.58 -2.39 -0.02 -0.03 16 15 C -0.55 -27.72 8.73 25.60 0.22 -27.49 16 16 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 17 C 0.02 0.83 5.29 84.65 0.45 1.28 16 18 N -0.91 -51.25 11.30 21.45 0.24 -51.01 16 19 Si 0.97 40.96 29.54 68.60 2.03 42.99 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 21 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 23 C -0.12 -5.79 5.45 30.59 0.17 -5.63 16 24 C -0.12 -5.27 8.51 71.98 0.61 -4.66 16 25 C -0.10 -1.83 9.60 22.37 0.21 -1.62 16 26 C -0.10 -1.73 5.65 -19.77 -0.11 -1.84 16 27 C -0.07 -0.71 5.99 29.80 0.18 -0.53 16 28 C -0.13 -1.60 6.07 29.74 0.18 -1.42 16 29 C 0.51 10.80 7.46 87.62 0.65 11.46 16 30 O -0.57 -15.92 16.59 -3.06 -0.05 -15.97 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.22 6.85 -2.39 -0.02 1.21 16 36 H 0.09 1.66 7.13 -2.39 -0.02 1.65 16 37 H 0.08 1.75 7.37 -2.39 -0.02 1.73 16 38 H 0.13 2.98 5.71 -2.91 -0.02 2.97 16 39 H 0.12 4.19 6.22 -2.91 -0.02 4.17 16 40 H 0.42 7.60 8.84 -92.70 -0.82 6.78 16 41 H 0.40 12.65 8.56 -92.71 -0.79 11.86 16 42 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 43 H 0.07 3.83 5.95 -2.39 -0.01 3.82 16 44 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.02 1.22 7.84 -2.39 -0.02 1.20 16 46 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 47 H 0.04 1.85 5.64 -2.39 -0.01 1.84 16 48 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 49 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 50 H 0.12 0.54 8.06 -2.39 -0.02 0.52 16 51 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 52 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -71.14 408.65 1.90 -69.24 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: -0.65 Total: 34.27 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 6.09 Total: 10.60 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -5.47 Total: -113.43 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -0.09 Total: -43.67 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -71.14 1.90 -69.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158655049.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.451 kcal (2) G-P(sol) polarization free energy of solvation -71.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds