Wall clock time and date at job start Tue Mar 31 2020 05:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46524 * 2 1 4 4 C 1.52999 * 109.47443 * 240.00410 * 2 1 3 5 5 Si 1.86291 * 109.47213 * 119.99606 * 2 1 3 6 6 C 1.86297 * 109.47528 * 300.00459 * 5 2 1 7 7 C 1.86299 * 109.47305 * 180.02562 * 5 2 1 8 8 O 1.63100 * 109.47059 * 60.00482 * 5 2 1 9 9 C 1.42903 * 114.00066 * 179.97438 * 8 5 2 10 10 C 1.53004 * 109.47141 * 179.97438 * 9 8 5 11 11 C 1.53000 * 109.47134 * 180.02562 * 10 9 8 12 12 N 1.46496 * 109.47240 * 180.02562 * 11 10 9 13 13 C 1.35641 * 124.68818 * 264.95797 * 12 11 10 14 14 C 1.38888 * 109.28448 * 180.02562 * 13 12 11 15 15 C 1.40896 * 126.93302 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00361 * 161.19807 * 15 14 13 17 17 C 1.39742 * 119.99907 * 341.20780 * 15 14 13 18 18 N 1.31055 * 119.99978 * 164.34058 * 17 15 14 19 19 Si 1.86800 * 119.99881 * 344.33447 * 17 15 14 20 20 H 1.48490 * 109.47236 * 91.03884 * 19 17 15 21 21 H 1.48505 * 109.46900 * 211.03859 * 19 17 15 22 22 H 1.48497 * 109.47144 * 331.03715 * 19 17 15 23 23 C 1.47673 * 106.13882 * 359.77051 * 14 13 12 24 24 C 1.39193 * 133.77142 * 179.51652 * 23 14 13 25 25 C 1.37878 * 119.69206 * 180.40300 * 24 23 14 26 26 C 1.38669 * 120.25047 * 0.27312 * 25 24 23 27 27 C 1.37866 * 120.62738 * 0.02562 * 26 25 24 28 28 C 1.38141 * 124.69571 * 84.99331 * 12 11 10 29 29 H 1.08999 * 109.47771 * 299.99932 * 1 2 3 30 30 H 1.09004 * 109.47294 * 60.00767 * 1 2 3 31 31 H 1.09005 * 109.46797 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46745 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47180 * 299.99344 * 3 2 1 34 34 H 1.08991 * 109.47379 * 60.00182 * 3 2 1 35 35 H 1.09005 * 109.46893 * 299.99658 * 4 2 1 36 36 H 1.08997 * 109.47193 * 59.99110 * 4 2 1 37 37 H 1.09000 * 109.47249 * 179.97438 * 4 2 1 38 38 H 1.08994 * 109.47655 * 180.02562 * 6 5 2 39 39 H 1.09005 * 109.47132 * 299.99877 * 6 5 2 40 40 H 1.09000 * 109.47054 * 59.99715 * 6 5 2 41 41 H 1.09004 * 109.47255 * 300.00730 * 7 5 2 42 42 H 1.09002 * 109.47295 * 59.99618 * 7 5 2 43 43 H 1.08997 * 109.47744 * 180.02562 * 7 5 2 44 44 H 1.08994 * 109.47175 * 60.00051 * 9 8 5 45 45 H 1.09003 * 109.47246 * 300.00305 * 9 8 5 46 46 H 1.09003 * 109.47070 * 60.00339 * 10 9 8 47 47 H 1.08996 * 109.47052 * 300.00340 * 10 9 8 48 48 H 1.08995 * 109.47170 * 59.99590 * 11 10 9 49 49 H 1.09001 * 109.46721 * 300.00237 * 11 10 9 50 50 H 1.08004 * 125.36004 * 0.03912 * 13 12 11 51 51 H 0.97001 * 120.00126 * 179.97438 * 18 17 15 52 52 H 1.08000 * 120.15428 * 0.67084 * 24 23 14 53 53 H 1.08006 * 119.87178 * 180.29616 * 25 24 23 54 54 H 1.08003 * 119.69094 * 180.02562 * 26 25 24 55 55 H 1.07992 * 120.01839 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 14 2.1510 -0.8781 1.5211 6 6 1.5300 0.0001 3.0422 7 6 4.0140 -0.8774 1.5215 8 8 1.6074 -2.4158 1.5211 9 6 2.0296 -3.1815 2.6515 10 6 1.4637 -4.5993 2.5472 11 6 1.9152 -5.4189 3.7577 12 7 1.3739 -6.7765 3.6576 13 6 0.2251 -7.1947 4.2450 14 6 0.0163 -8.5340 3.9422 15 6 -1.0626 -9.3382 4.3598 16 1 -1.2877 -10.2550 3.8350 17 6 -1.8416 -8.9496 5.4529 18 7 -3.0086 -9.5096 5.6581 19 14 -1.2195 -7.6319 6.6217 20 1 -1.6865 -6.3001 6.1599 21 1 -1.7427 -7.8940 7.9866 22 1 0.2650 -7.6543 6.6479 23 6 1.1500 -8.9436 3.0892 24 6 1.5131 -10.1412 2.4797 25 6 2.6697 -10.2037 1.7318 26 6 3.4719 -9.0815 1.5907 27 6 3.1267 -7.8910 2.1943 28 6 1.9633 -7.8080 2.9526 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8901 34 1 1.6765 1.9564 0.8899 35 1 1.6768 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1301 -0.7207 -1.2495 38 1 1.8937 -0.5134 3.9322 39 1 1.8933 1.0278 3.0423 40 1 0.4400 0.0000 3.0422 41 1 4.3777 -1.3909 0.6315 42 1 4.3770 0.1504 1.5216 43 1 4.3774 -1.3915 2.4113 44 1 1.6655 -2.7117 3.5651 45 1 3.1185 -3.2253 2.6745 46 1 1.8276 -5.0694 1.6336 47 1 0.3749 -4.5551 2.5244 48 1 1.5512 -4.9486 4.6711 49 1 3.0041 -5.4630 3.7809 50 1 -0.4252 -6.5826 4.8523 51 1 -3.5492 -9.2401 6.4170 52 1 0.8895 -11.0162 2.5887 53 1 2.9517 -11.1302 1.2537 54 1 4.3758 -9.1405 1.0024 55 1 3.7590 -7.0232 2.0782 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170002961.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:05 Heat of formation + Delta-G solvation = -60.629041 kcal Electronic energy + Delta-G solvation = -29722.875240 eV Core-core repulsion = 25959.920038 eV Total energy + Delta-G solvation = -3762.955202 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.202 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.72717 -38.39814 -37.55779 -36.81320 -35.80241 -34.30458 -32.23429 -30.38904 -29.95777 -29.34308 -29.04161 -27.81103 -27.46930 -27.36440 -25.17844 -23.49671 -22.82332 -21.67638 -21.29769 -20.39635 -18.84522 -18.00563 -17.46141 -16.93364 -16.66785 -16.25377 -16.18321 -15.94872 -15.41718 -15.07369 -14.96721 -14.86824 -14.76189 -14.73569 -14.44649 -14.12963 -13.92415 -13.54544 -13.46631 -13.36239 -13.26792 -13.15298 -13.11941 -12.94008 -12.89064 -12.83615 -12.65332 -12.51424 -12.38587 -12.31047 -12.07353 -11.79479 -11.69189 -11.67712 -11.51080 -11.45966 -11.34758 -11.25721 -11.04658 -10.27099 -10.21073 -10.02541 -8.78292 -8.72684 -8.56638 -6.08921 0.46733 0.94707 1.19711 1.32885 1.48575 1.53934 1.81513 1.93864 2.16501 2.18093 2.32366 2.56754 3.04474 3.46601 3.83702 3.99234 4.10461 4.14501 4.14692 4.17926 4.25227 4.30848 4.36732 4.44420 4.49107 4.50504 4.54306 4.77031 4.77934 4.79895 4.82053 4.83141 4.83865 4.86171 4.92385 4.98564 5.01646 5.10222 5.10532 5.11340 5.16204 5.22481 5.25152 5.31932 5.35441 5.42158 5.47207 5.48040 5.58517 5.63307 5.67070 5.78549 5.92521 5.94066 6.16594 6.41437 6.60629 6.77093 6.99339 7.02000 8.38918 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.010722 B = 0.002515 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.755725 B =11131.875144 C =12648.438853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.379 4.379 3 C -0.137 4.137 4 C -0.136 4.136 5 Si 1.296 2.704 6 C -0.515 4.515 7 C -0.508 4.508 8 O -0.648 6.648 9 C 0.088 3.912 10 C -0.133 4.133 11 C 0.109 3.891 12 N -0.472 5.472 13 C -0.152 4.152 14 C -0.005 4.005 15 C -0.453 4.453 16 H 0.044 0.956 17 C 0.034 3.966 18 N -0.879 5.879 19 Si 0.968 3.032 20 H -0.258 1.258 21 H -0.285 1.285 22 H -0.249 1.249 23 C -0.170 4.170 24 C -0.080 4.080 25 C -0.177 4.177 26 C -0.096 4.096 27 C -0.150 4.150 28 C 0.100 3.900 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.067 0.933 47 H 0.053 0.947 48 H 0.093 0.907 49 H 0.107 0.893 50 H 0.143 0.857 51 H 0.286 0.714 52 H 0.099 0.901 53 H 0.139 0.861 54 H 0.156 0.844 55 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.092 22.600 -7.923 28.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.422 4.422 3 C -0.194 4.194 4 C -0.193 4.193 5 Si 1.428 2.572 6 C -0.617 4.617 7 C -0.611 4.611 8 O -0.607 6.607 9 C 0.012 3.988 10 C -0.172 4.172 11 C -0.012 4.012 12 N -0.157 5.157 13 C -0.273 4.273 14 C -0.011 4.011 15 C -0.486 4.486 16 H 0.063 0.937 17 C -0.175 4.175 18 N -0.509 5.509 19 Si 0.793 3.207 20 H -0.184 1.184 21 H -0.213 1.213 22 H -0.173 1.173 23 C -0.176 4.176 24 C -0.098 4.098 25 C -0.196 4.196 26 C -0.115 4.115 27 C -0.171 4.171 28 C -0.009 4.009 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.086 0.914 47 H 0.072 0.928 48 H 0.112 0.888 49 H 0.125 0.875 50 H 0.160 0.840 51 H 0.096 0.904 52 H 0.117 0.883 53 H 0.157 0.843 54 H 0.173 0.827 55 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 15.729 22.684 -7.862 28.702 hybrid contribution -0.897 0.205 0.671 1.138 sum 14.833 22.889 -7.191 28.207 Atomic orbital electron populations 1.21542 0.94701 1.01322 1.01927 1.25833 1.00021 1.03444 1.12892 1.21579 1.01459 0.94089 1.02299 1.21531 1.01227 0.99674 0.96909 0.76574 0.63487 0.52663 0.64503 1.27066 1.06544 1.10035 1.18074 1.26960 1.24134 1.05298 1.04734 1.85332 1.79989 1.47143 1.48268 1.22000 0.99246 0.90386 0.87168 1.21968 1.01495 0.95188 0.98550 1.21766 1.00558 0.79510 0.99368 1.43123 1.20116 1.08844 1.43580 1.21532 0.95633 0.95247 1.14930 1.18418 0.93274 0.92046 0.97348 1.18546 1.09853 1.07161 1.13051 0.93739 1.26661 0.93366 0.98391 0.99098 1.69818 1.10108 1.42056 1.28916 0.85489 0.80545 0.78163 0.76486 1.18368 1.21267 1.17321 1.19629 0.97392 0.95148 1.05392 1.20604 0.97179 0.95444 0.96619 1.20991 0.95655 1.00144 1.02848 1.21058 0.99930 0.91369 0.99102 1.20249 0.95335 1.00015 1.01545 1.18517 0.96273 0.87773 0.98347 0.92115 0.92904 0.93527 0.91402 0.92861 0.91784 0.93398 0.92984 0.91645 0.91092 0.89816 0.91717 0.91058 0.89805 0.90853 0.91156 0.89987 0.91404 0.92847 0.88829 0.87508 0.83996 0.90386 0.88281 0.84295 0.82658 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 7.85 71.98 0.56 -1.70 16 2 C -0.38 -5.40 0.53 -10.79 -0.01 -5.41 16 3 C -0.14 -1.52 7.85 71.98 0.56 -0.96 16 4 C -0.14 -2.08 7.85 71.98 0.56 -1.51 16 5 Si 1.30 17.59 8.45 68.60 0.58 18.17 16 6 C -0.52 -6.96 8.50 113.37 0.96 -6.00 16 7 C -0.51 -5.91 8.50 113.37 0.96 -4.95 16 8 O -0.65 -13.03 8.56 -148.98 -1.28 -14.30 16 9 C 0.09 1.61 5.12 71.98 0.37 1.98 16 10 C -0.13 -3.44 5.91 30.60 0.18 -3.26 16 11 C 0.11 3.00 5.94 86.38 0.51 3.51 16 12 N -0.47 -18.89 2.75 -512.67 -1.41 -20.30 16 13 C -0.15 -7.29 8.67 84.26 0.73 -6.56 16 14 C 0.00 -0.25 5.67 -19.98 -0.11 -0.36 16 15 C -0.45 -27.36 9.94 23.28 0.23 -27.13 16 16 H 0.04 2.91 8.06 -2.91 -0.02 2.88 16 17 C 0.03 1.96 5.50 85.17 0.47 2.43 16 18 N -0.88 -51.80 13.94 21.80 0.30 -51.50 16 19 Si 0.97 44.56 24.54 68.60 1.68 46.24 16 20 H -0.26 -10.99 6.70 99.48 0.67 -10.32 16 21 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.25 -11.47 6.56 99.48 0.65 -10.82 16 23 C -0.17 -8.28 6.33 -20.04 -0.13 -8.41 16 24 C -0.08 -3.47 10.09 22.41 0.23 -3.24 16 25 C -0.18 -5.97 10.04 22.29 0.22 -5.75 16 26 C -0.10 -2.82 10.01 22.28 0.22 -2.60 16 27 C -0.15 -4.85 9.95 22.40 0.22 -4.62 16 28 C 0.10 4.13 6.78 38.88 0.26 4.39 16 29 H 0.06 0.89 7.79 -2.39 -0.02 0.87 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.89 7.97 -2.38 -0.02 0.87 16 32 H 0.07 0.58 7.79 -2.39 -0.02 0.57 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.60 7.79 -2.39 -0.02 0.58 16 35 H 0.05 0.85 7.97 -2.38 -0.02 0.83 16 36 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 0.82 7.79 -2.39 -0.02 0.80 16 38 H 0.07 0.91 7.48 -2.39 -0.02 0.89 16 39 H 0.08 0.91 7.79 -2.38 -0.02 0.89 16 40 H 0.06 0.98 7.79 -2.39 -0.02 0.96 16 41 H 0.07 0.87 7.79 -2.38 -0.02 0.85 16 42 H 0.08 0.78 7.79 -2.39 -0.02 0.76 16 43 H 0.07 0.78 7.48 -2.39 -0.02 0.76 16 44 H 0.07 1.06 7.21 -2.39 -0.02 1.05 16 45 H 0.08 1.06 7.21 -2.39 -0.02 1.04 16 46 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.09 2.29 8.11 -2.39 -0.02 2.27 16 49 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 50 H 0.14 6.61 4.16 -2.91 -0.01 6.60 16 51 H 0.29 15.26 8.30 -92.71 -0.77 14.49 16 52 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 53 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 54 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 55 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -71.86 436.97 7.64 -64.22 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.73 Total: 27.61 kcal Atomic # 6 Polarization: -77.16 SS G_CDS: 7.03 Total: -70.13 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: -1.11 Total: -71.80 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -1.28 Total: -14.30 kcal Atomic # 14 Polarization: 62.15 SS G_CDS: 2.26 Total: 64.41 kcal Total: -71.86 7.64 -64.22 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170002961.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.586 kcal (2) G-P(sol) polarization free energy of solvation -71.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds