Wall clock time and date at job start Tue Mar 31 2020 07:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35238 * 107.85507 * 179.89559 * 11 10 9 13 13 C 1.40399 * 107.87195 * 0.36359 * 12 11 10 14 14 N 1.40191 * 125.97315 * 179.74786 * 13 12 11 15 15 C 1.34773 * 120.00083 * 0.02562 * 14 13 12 16 16 O 1.21590 * 119.99789 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00202 * 179.97438 * 15 14 13 18 18 C 1.39649 * 120.00161 * 179.97438 * 17 15 14 19 19 N 1.32924 * 125.26791 * 359.69698 * 18 17 15 20 20 C 1.32952 * 109.63163 * 179.81924 * 19 18 17 21 21 C 1.40616 * 132.74093 * 180.11786 * 20 19 18 22 22 C 1.36226 * 119.28932 * 180.33817 * 21 20 19 23 23 C 1.40312 * 119.60133 * 0.02562 * 22 21 20 24 24 Cl 1.73598 * 119.91487 * 179.97438 * 23 22 21 25 25 C 1.35339 * 120.16718 * 359.97438 * 23 22 21 26 26 N 1.35905 * 120.57416 * 359.97438 * 25 23 22 27 27 N 1.31763 * 125.26364 * 179.97438 * 18 17 15 28 28 N 1.31212 * 108.05226 * 359.77673 * 13 12 11 29 29 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 31 31 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 32 32 H 1.08001 * 126.06683 * 0.03912 * 11 10 9 33 33 H 1.08003 * 126.06135 * 180.14577 * 12 11 10 34 34 H 0.97004 * 119.99766 * 180.02562 * 14 13 12 35 35 H 0.97004 * 119.99647 * 359.97438 * 17 15 14 36 36 H 1.07993 * 120.35151 * 0.36539 * 21 20 19 37 37 H 1.08005 * 120.19898 * 180.02562 * 22 21 20 38 38 H 1.08001 * 119.71227 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2635 -5.4432 0.5308 13 6 3.8672 -4.9127 -0.6204 14 7 4.9614 -5.4615 -1.3037 15 6 5.5281 -6.6021 -0.8628 16 8 5.0906 -7.1548 0.1278 17 7 6.5797 -7.1299 -1.5200 18 6 7.1672 -8.3114 -1.0629 19 7 6.7795 -8.9971 0.0078 20 6 7.5503 -10.0705 0.1540 21 6 7.5689 -11.1103 1.1005 22 6 8.5055 -12.0935 0.9920 23 6 9.4344 -12.0531 -0.0588 24 17 10.6318 -13.3015 -0.2044 25 6 9.3991 -11.0433 -0.9592 26 7 8.4671 -10.0593 -0.8582 27 7 8.1950 -8.9163 -1.6233 28 7 3.2287 -3.8133 -0.9445 29 1 -0.4850 -0.8400 0.0004 30 1 0.6281 -2.5591 0.8866 31 1 0.6207 -2.5548 -0.8933 32 1 1.5906 -4.7508 1.7300 33 1 3.5592 -6.3454 1.0457 34 1 5.3107 -5.0202 -2.0938 35 1 6.9285 -6.6890 -2.3106 36 1 6.8481 -11.1293 1.9044 37 1 8.5329 -12.8994 1.7106 38 1 10.1174 -11.0196 -1.7654 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170605390.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:34 Heat of formation + Delta-G solvation = 198.905362 kcal Electronic energy + Delta-G solvation = -27367.185300 eV Core-core repulsion = 23083.388374 eV Total energy + Delta-G solvation = -4283.796926 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 361.079 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.19839 -40.95550 -39.92955 -38.64253 -37.09320 -35.14854 -34.80904 -34.06743 -33.63640 -31.13524 -30.58005 -30.14875 -29.39631 -26.38192 -24.83312 -24.04476 -23.50970 -22.74824 -21.44852 -20.65839 -20.16203 -18.89540 -18.26715 -17.84835 -17.19161 -17.13274 -16.94024 -16.65325 -16.03668 -15.66315 -15.35102 -14.95479 -14.57636 -14.17719 -13.86661 -13.80825 -13.75984 -13.38494 -13.20168 -12.59095 -12.42287 -12.20381 -12.16590 -11.84708 -11.73389 -11.65811 -11.18235 -10.85606 -10.73426 -10.60818 -10.47471 -10.16489 -10.10449 -9.77377 -9.32832 -9.01423 -8.72658 -8.58538 -8.23702 -7.54257 -6.58439 -4.32603 0.00359 0.26376 0.80196 1.53968 1.99703 2.15448 2.54625 2.79054 3.07884 3.11844 3.37768 3.39244 3.41411 3.58414 3.69828 3.80168 3.88709 4.10175 4.33200 4.40804 4.55860 4.97630 5.09606 5.15119 5.21525 5.34901 5.46779 5.65297 5.67851 5.94633 6.07438 6.13536 6.30648 6.41241 6.58915 6.68159 6.76108 7.26063 7.43265 7.63843 7.79460 7.82243 8.30284 8.33615 8.51334 8.61012 9.35588 10.79144 Molecular weight = 361.08amu Principal moments of inertia in cm(-1) A = 0.033878 B = 0.001512 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.295694 B =18515.926311 C =18925.693271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.609 4.609 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.317 5.317 11 C 0.053 3.947 12 C -0.282 4.282 13 C 0.276 3.724 14 N -0.634 5.634 15 C 0.713 3.287 16 O -0.503 6.503 17 N -0.632 5.632 18 C 0.513 3.487 19 N -0.505 5.505 20 C 0.295 3.705 21 C -0.086 4.086 22 C -0.054 4.054 23 C -0.086 4.086 24 Cl -0.028 7.028 25 C 0.136 3.864 26 N -0.278 5.278 27 N -0.355 5.355 28 N -0.300 5.300 29 H 0.267 0.733 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.169 0.831 33 H 0.164 0.836 34 H 0.410 0.590 35 H 0.424 0.576 36 H 0.170 0.830 37 H 0.161 0.839 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.426 -27.465 -0.813 34.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.647 4.647 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.098 5.098 11 C -0.097 4.097 12 C -0.314 4.314 13 C 0.022 3.978 14 N -0.284 5.284 15 C 0.410 3.590 16 O -0.370 6.370 17 N -0.289 5.289 18 C 0.145 3.855 19 N -0.238 5.238 20 C 0.040 3.960 21 C -0.108 4.108 22 C -0.080 4.080 23 C -0.118 4.118 24 Cl 0.001 6.999 25 C 0.006 3.994 26 N -0.054 5.054 27 N -0.195 5.195 28 N -0.131 5.131 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.186 0.814 33 H 0.181 0.819 34 H 0.245 0.755 35 H 0.262 0.738 36 H 0.188 0.812 37 H 0.179 0.821 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 19.624 -24.711 -1.194 31.578 hybrid contribution 0.855 -2.090 -0.344 2.285 sum 20.480 -26.802 -1.538 33.766 Atomic orbital electron populations 1.70852 1.06772 1.30435 1.45927 1.25916 0.96312 1.02791 0.93132 0.83419 0.74808 0.74580 0.76831 1.20521 1.21241 1.21159 1.22109 0.95399 0.90451 1.56729 0.91820 1.19771 0.86288 0.82789 0.98041 1.48787 1.23306 1.19582 1.18170 1.22561 1.00407 0.90042 0.96686 1.21539 1.02029 1.06388 1.01410 1.18676 0.90578 0.94188 0.94382 1.41137 1.31575 1.24302 1.31428 1.15371 0.79611 0.80839 0.83175 1.91026 1.61570 1.60239 1.24193 1.41477 1.32906 1.22154 1.32314 1.19822 0.88732 0.87905 0.89048 1.71184 1.27861 1.05524 1.19197 1.21990 0.87656 0.95482 0.90843 1.20333 1.00971 0.90809 0.98676 1.21144 0.91799 0.98723 0.96313 1.20034 0.97985 0.94406 0.99358 1.98419 1.54112 1.49745 1.97623 1.21102 0.92427 0.85794 1.00116 1.47359 1.21790 1.16614 1.19634 1.78786 1.22517 0.99445 1.18772 1.77354 1.03635 1.15975 1.16161 0.92267 0.93541 0.94728 0.81385 0.81864 0.75452 0.73833 0.81216 0.82110 0.80290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 13.65 55.43 0.76 -25.50 16 2 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 24.87 29.90 -169.99 -5.08 19.78 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.61 -17.06 9.24 -34.44 -0.32 -17.38 16 8 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 9 C 0.25 6.27 5.57 -5.19 -0.03 6.24 16 10 N -0.32 -7.35 3.67 -62.56 -0.23 -7.58 16 11 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 12 C -0.28 -5.60 9.60 -39.84 -0.38 -5.98 16 13 C 0.28 5.48 8.11 -154.36 -1.25 4.23 16 14 N -0.63 -9.65 5.45 -15.51 -0.08 -9.73 16 15 C 0.71 10.85 8.50 -86.92 -0.74 10.11 16 16 O -0.50 -9.36 12.12 5.29 0.06 -9.30 16 17 N -0.63 -7.52 5.43 -17.31 -0.09 -7.61 16 18 C 0.51 6.92 8.77 -321.35 -2.82 4.10 16 19 N -0.51 -7.39 9.39 -13.12 -0.12 -7.51 16 20 C 0.29 3.26 7.87 -156.30 -1.23 2.03 16 21 C -0.09 -0.59 10.10 -39.41 -0.40 -0.99 16 22 C -0.05 -0.23 9.86 -39.53 -0.39 -0.62 16 23 C -0.09 -0.43 6.28 -39.84 -0.25 -0.68 16 24 Cl -0.03 -0.11 28.94 -51.86 -1.50 -1.62 16 25 C 0.14 0.87 10.95 -16.78 -0.18 0.69 16 26 N -0.28 -2.81 3.89 -12.31 -0.05 -2.86 16 27 N -0.35 -4.25 12.80 29.96 0.38 -3.86 16 28 N -0.30 -6.87 12.42 31.44 0.39 -6.48 16 29 H 0.27 7.58 7.22 -40.82 -0.29 7.28 16 30 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 31 H 0.03 0.91 8.00 -51.93 -0.42 0.49 16 32 H 0.17 2.72 8.06 -52.49 -0.42 2.30 16 33 H 0.16 3.19 5.91 -52.48 -0.31 2.88 16 34 H 0.41 4.83 8.84 -40.82 -0.36 4.47 16 35 H 0.42 3.37 8.84 -40.82 -0.36 3.01 16 36 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 37 H 0.16 0.22 8.06 -52.48 -0.42 -0.20 16 38 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -37.01 357.56 -11.52 -48.53 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -3.05 Total: 5.20 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -8.29 Total: 3.14 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: 0.95 Total: -71.13 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.06 Total: -9.30 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.08 Total: 19.78 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.50 Total: -1.62 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.01 -11.52 -48.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170605390.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.435 kcal (2) G-P(sol) polarization free energy of solvation -37.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 210.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 198.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds