Wall clock time and date at job start Tue Mar 31 2020 07:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46983 * 2 1 4 4 N 1.46507 * 109.47162 * 179.97438 * 3 2 1 5 5 C 1.36928 * 120.00084 * 293.72271 * 4 3 2 6 6 H 1.07999 * 120.00606 * 149.44010 * 5 4 3 7 7 C 1.38817 * 120.00107 * 329.43823 * 5 4 3 8 8 N 1.31626 * 119.99548 * 337.44774 * 7 5 4 9 9 Si 1.86791 * 120.00329 * 157.44560 * 7 5 4 10 10 H 1.48506 * 109.47189 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47075 * 120.00086 * 9 7 5 12 12 H 1.48503 * 109.47240 * 239.99902 * 9 7 5 13 13 S 1.65598 * 119.99672 * 113.71922 * 4 3 2 14 14 O 1.42104 * 104.28197 * 333.92838 * 13 4 3 15 15 O 1.42108 * 104.27591 * 206.07348 * 13 4 3 16 16 C 1.81399 * 104.45231 * 90.00229 * 13 4 3 17 17 C 1.50693 * 109.47465 * 179.97438 * 16 13 4 18 18 C 1.38249 * 119.99029 * 270.25067 * 17 16 13 19 19 C 1.38214 * 120.00818 * 180.29651 * 18 17 16 20 20 C 1.38323 * 119.99216 * 359.47357 * 19 18 17 21 21 Br 1.89101 * 120.01384 * 180.27736 * 20 19 18 22 22 C 1.38324 * 119.98003 * 0.25115 * 20 19 18 23 23 C 1.38216 * 119.98875 * 0.02562 * 22 20 19 24 24 H 1.09003 * 109.46989 * 60.00375 * 1 2 3 25 25 H 1.09003 * 109.47028 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47493 * 300.00460 * 1 2 3 27 27 H 1.08997 * 109.47493 * 239.99540 * 2 1 3 28 28 H 1.09003 * 109.46989 * 119.99625 * 2 1 3 29 29 H 1.08996 * 109.47485 * 60.00015 * 3 2 1 30 30 H 1.09003 * 109.46952 * 299.99648 * 3 2 1 31 31 H 0.96997 * 119.99754 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.47240 * 59.99545 * 16 13 4 33 33 H 1.08998 * 109.46975 * 300.00219 * 16 13 4 34 34 H 1.07999 * 119.99680 * 0.02877 * 18 17 16 35 35 H 1.08005 * 120.00457 * 179.75470 * 19 18 17 36 36 H 1.08001 * 120.01219 * 180.02562 * 22 20 19 37 37 H 1.08008 * 119.99642 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 0.9656 1.0866 6 1 5.1568 0.5042 0.9553 7 6 3.6393 1.0754 2.3565 8 7 2.7228 1.9882 2.6000 9 14 4.1997 -0.0724 3.7194 10 1 5.2318 -1.0007 3.1918 11 1 4.7744 0.7249 4.8328 12 1 3.0390 -0.8533 4.2176 13 16 4.3334 2.0193 -1.3121 14 8 3.4379 1.8359 -2.4001 15 8 5.5800 1.3384 -1.2666 16 6 4.5596 3.7852 -0.9646 17 6 5.3112 4.4287 -2.1013 18 6 6.6925 4.4784 -2.0760 19 6 7.3819 5.0739 -3.1155 20 6 6.6901 5.6106 -4.1863 21 35 7.6331 6.4185 -5.6124 22 6 5.3082 5.5556 -4.2139 23 6 4.6194 4.9650 -3.1713 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 2.3388 2.0651 3.4874 32 1 5.1266 3.9042 -0.0412 33 1 3.5854 4.2620 -0.8567 34 1 7.2328 4.0556 -1.2420 35 1 8.4609 5.1162 -3.0938 36 1 4.7675 5.9741 -5.0499 37 1 3.5403 4.9223 -3.1925 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170615577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:29 Heat of formation + Delta-G solvation = -51.765455 kcal Electronic energy + Delta-G solvation = -22375.674598 eV Core-core repulsion = 18905.145781 eV Total energy + Delta-G solvation = -3470.528817 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 361.013 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.18865 -36.49693 -35.70764 -34.50074 -33.23388 -32.70049 -31.22577 -30.95982 -30.32170 -26.25887 -26.11728 -23.93152 -22.72112 -21.19383 -20.63664 -18.49513 -17.09886 -16.68091 -16.53892 -15.47469 -15.31823 -14.95106 -14.77898 -14.51025 -14.02005 -13.58716 -13.40497 -13.22448 -12.91057 -12.85459 -12.04272 -11.98150 -11.89912 -11.61082 -11.25530 -11.16806 -11.06648 -11.03783 -10.92257 -10.72660 -10.69118 -10.59056 -10.44989 -10.30125 -10.13077 -9.88967 -9.70703 -9.48576 -8.94283 -8.38276 -7.94325 -6.70179 -4.21591 1.01706 1.40469 1.63274 1.67361 2.99540 3.08130 3.15170 3.73377 3.80804 4.18308 4.55006 4.83407 4.89636 4.97200 5.23194 5.27729 5.47957 5.55266 5.73859 5.76711 5.79835 5.91432 6.01270 6.12918 6.19528 6.25243 6.27266 6.42773 6.51504 6.58416 6.69742 6.73068 6.86131 6.92469 7.07127 7.26867 7.44496 8.16148 8.50936 9.00359 10.17286 Molecular weight = 361.01amu Principal moments of inertia in cm(-1) A = 0.021806 B = 0.002706 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.756994 B =10345.672505 C =11064.181761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.112 3.888 4 N -0.795 5.795 5 C -0.228 4.228 6 H 0.115 0.885 7 C 0.036 3.964 8 N -0.816 5.816 9 Si 0.922 3.078 10 H -0.259 1.259 11 H -0.276 1.276 12 H -0.274 1.274 13 S 2.453 3.547 14 O -0.999 6.999 15 O -0.980 6.980 16 C -0.623 4.623 17 C -0.040 4.040 18 C -0.115 4.115 19 C -0.086 4.086 20 C -0.104 4.104 21 Br -0.064 7.064 22 C -0.087 4.087 23 C -0.117 4.117 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.278 0.722 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.717 7.082 -6.398 9.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.014 4.014 4 N -0.617 5.617 5 C -0.379 4.379 6 H 0.133 0.867 7 C -0.179 4.179 8 N -0.454 5.454 9 Si 0.747 3.253 10 H -0.183 1.183 11 H -0.202 1.202 12 H -0.199 1.199 13 S 2.554 3.446 14 O -0.988 6.988 15 O -0.970 6.970 16 C -0.737 4.737 17 C -0.042 4.042 18 C -0.134 4.134 19 C -0.106 4.106 20 C -0.184 4.184 21 Br 0.021 6.979 22 C -0.107 4.107 23 C -0.136 4.136 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.273 7.187 -7.855 11.139 hybrid contribution -0.070 0.180 1.379 1.393 sum 3.203 7.367 -6.476 10.318 Atomic orbital electron populations 1.21696 0.96703 1.00644 1.01324 1.21640 0.94141 0.98318 1.02031 1.21560 0.79731 0.96974 1.03139 1.54042 1.12394 1.60627 1.34659 1.20054 1.05750 1.27294 0.84768 0.86706 1.25840 0.96756 0.96481 0.98851 1.69904 1.24603 1.28002 1.22888 0.85901 0.79446 0.80223 0.79732 1.18282 1.20164 1.19903 1.15065 0.74451 0.77323 0.77739 1.93331 1.64072 1.85469 1.55948 1.93341 1.45777 1.70642 1.87235 1.30346 1.06585 1.33753 1.03044 1.19575 0.93724 0.96122 0.94777 1.21214 0.93698 0.99332 0.99183 1.21060 1.00125 0.96969 0.92464 1.21675 0.94766 1.06317 0.95618 1.96637 1.75638 1.80745 1.44841 1.21043 0.92029 0.98784 0.98819 1.21176 1.00679 0.98283 0.93465 0.93234 0.93498 0.92856 0.92886 0.91419 0.87713 0.92279 0.91185 0.85538 0.86261 0.84470 0.84945 0.84990 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 37.16 0.37 -1.92 16 2 C -0.12 -2.35 5.98 -26.73 -0.16 -2.51 16 3 C 0.11 2.36 5.06 -4.04 -0.02 2.34 16 4 N -0.80 -18.16 2.91 -59.91 -0.17 -18.33 16 5 C -0.23 -5.32 8.63 -15.06 -0.13 -5.45 16 6 H 0.12 2.74 7.26 -52.49 -0.38 2.36 16 7 C 0.04 0.78 4.63 -17.43 -0.08 0.70 16 8 N -0.82 -18.09 11.06 55.49 0.61 -17.48 16 9 Si 0.92 17.36 29.61 -169.99 -5.03 12.33 16 10 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 11 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 12 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 13 S 2.45 55.98 5.34 -107.50 -0.57 55.41 16 14 O -1.00 -24.46 16.65 -57.54 -0.96 -25.42 16 15 O -0.98 -24.95 16.82 -57.54 -0.97 -25.91 16 16 C -0.62 -11.94 6.30 36.00 0.23 -11.71 16 17 C -0.04 -0.72 5.14 -104.62 -0.54 -1.26 16 18 C -0.11 -1.93 9.70 -39.59 -0.38 -2.31 16 19 C -0.09 -1.29 9.79 -39.56 -0.39 -1.67 16 20 C -0.10 -1.52 6.22 -39.52 -0.25 -1.77 16 21 Br -0.06 -0.78 33.70 -68.01 -2.29 -3.07 16 22 C -0.09 -1.28 9.79 -39.56 -0.39 -1.67 16 23 C -0.12 -1.93 9.70 -39.59 -0.38 -2.31 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.07 1.35 7.41 -51.93 -0.39 0.97 16 29 H 0.11 2.26 5.52 -51.93 -0.29 1.97 16 30 H 0.06 1.20 7.01 -51.93 -0.36 0.83 16 31 H 0.28 5.73 8.31 -40.82 -0.34 5.39 16 32 H 0.13 2.37 8.09 -51.92 -0.42 1.95 16 33 H 0.12 2.13 8.09 -51.92 -0.42 1.71 16 34 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 35 H 0.13 1.64 8.06 -52.48 -0.42 1.21 16 36 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.14 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 344.76 15.07 5.20 5.20 Total: -1.00 -27.24 344.76 -11.09 -38.33 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -4.77 Total: 8.49 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: -2.12 Total: -29.54 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.44 Total: -35.81 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -1.93 Total: -51.33 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Atomic # 16 Polarization: 55.98 SS G_CDS: -0.57 Total: 55.41 kcal Atomic # 35 Polarization: -0.78 SS G_CDS: -2.29 Total: -3.07 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.24 -11.09 -38.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170615577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.437 kcal (2) G-P(sol) polarization free energy of solvation -27.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds