Wall clock time and date at job start Tue Mar 31 2020 07:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46983 * 2 1 4 4 N 1.46507 * 109.47162 * 179.97438 * 3 2 1 5 5 C 1.36928 * 120.00084 * 293.72271 * 4 3 2 6 6 H 1.07999 * 120.00606 * 149.44010 * 5 4 3 7 7 C 1.38817 * 120.00107 * 329.43823 * 5 4 3 8 8 N 1.31626 * 119.99548 * 337.44774 * 7 5 4 9 9 Si 1.86791 * 120.00329 * 157.44560 * 7 5 4 10 10 H 1.48506 * 109.47189 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47075 * 120.00086 * 9 7 5 12 12 H 1.48503 * 109.47240 * 239.99902 * 9 7 5 13 13 S 1.65598 * 119.99672 * 113.71922 * 4 3 2 14 14 O 1.42104 * 104.28197 * 333.92838 * 13 4 3 15 15 O 1.42108 * 104.27591 * 206.07348 * 13 4 3 16 16 C 1.81399 * 104.45231 * 90.00229 * 13 4 3 17 17 C 1.50693 * 109.47465 * 179.97438 * 16 13 4 18 18 C 1.38249 * 119.99029 * 270.25067 * 17 16 13 19 19 C 1.38214 * 120.00818 * 180.29651 * 18 17 16 20 20 C 1.38323 * 119.99216 * 359.47357 * 19 18 17 21 21 Br 1.89101 * 120.01384 * 180.27736 * 20 19 18 22 22 C 1.38324 * 119.98003 * 0.25115 * 20 19 18 23 23 C 1.38216 * 119.98875 * 0.02562 * 22 20 19 24 24 H 1.09003 * 109.46989 * 60.00375 * 1 2 3 25 25 H 1.09003 * 109.47028 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47493 * 300.00460 * 1 2 3 27 27 H 1.08997 * 109.47493 * 239.99540 * 2 1 3 28 28 H 1.09003 * 109.46989 * 119.99625 * 2 1 3 29 29 H 1.08996 * 109.47485 * 60.00015 * 3 2 1 30 30 H 1.09003 * 109.46952 * 299.99648 * 3 2 1 31 31 H 0.96997 * 119.99754 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.47240 * 59.99545 * 16 13 4 33 33 H 1.08998 * 109.46975 * 300.00219 * 16 13 4 34 34 H 1.07999 * 119.99680 * 0.02877 * 18 17 16 35 35 H 1.08005 * 120.00457 * 179.75470 * 19 18 17 36 36 H 1.08001 * 120.01219 * 180.02562 * 22 20 19 37 37 H 1.08008 * 119.99642 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 0.9656 1.0866 6 1 5.1568 0.5042 0.9553 7 6 3.6393 1.0754 2.3565 8 7 2.7228 1.9882 2.6000 9 14 4.1997 -0.0724 3.7194 10 1 5.2318 -1.0007 3.1918 11 1 4.7744 0.7249 4.8328 12 1 3.0390 -0.8533 4.2176 13 16 4.3334 2.0193 -1.3121 14 8 3.4379 1.8359 -2.4001 15 8 5.5800 1.3384 -1.2666 16 6 4.5596 3.7852 -0.9646 17 6 5.3112 4.4287 -2.1013 18 6 6.6925 4.4784 -2.0760 19 6 7.3819 5.0739 -3.1155 20 6 6.6901 5.6106 -4.1863 21 35 7.6331 6.4185 -5.6124 22 6 5.3082 5.5556 -4.2139 23 6 4.6194 4.9650 -3.1713 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 2.3388 2.0651 3.4874 32 1 5.1266 3.9042 -0.0412 33 1 3.5854 4.2620 -0.8567 34 1 7.2328 4.0556 -1.2420 35 1 8.4609 5.1162 -3.0938 36 1 4.7675 5.9741 -5.0499 37 1 3.5403 4.9223 -3.1925 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170615577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:28 Heat of formation + Delta-G solvation = -66.074986 kcal Electronic energy + Delta-G solvation = -22376.295105 eV Core-core repulsion = 18905.145781 eV Total energy + Delta-G solvation = -3471.149324 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 361.013 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.42455 -38.16817 -37.61806 -36.42181 -34.51540 -34.27924 -32.86056 -32.17194 -31.52302 -27.75444 -27.62608 -25.54276 -23.94142 -22.48388 -22.19037 -20.23713 -18.88296 -18.41929 -17.87603 -16.93568 -16.83735 -16.57700 -16.16972 -16.10159 -15.55994 -15.21399 -14.60100 -14.54328 -14.32522 -14.18220 -13.61925 -13.53682 -13.43090 -13.20794 -12.88957 -12.69864 -12.64147 -12.55008 -12.27249 -12.26987 -12.24096 -12.12895 -12.04890 -11.73624 -11.40974 -11.34543 -11.28707 -11.13951 -10.15743 -9.84108 -9.48661 -8.37731 -5.98632 -0.46161 0.14533 0.18402 0.50236 1.48815 1.54116 1.65461 2.18260 2.46539 2.51706 2.84804 3.30257 3.50996 3.65213 3.75109 3.84747 4.17968 4.24524 4.27105 4.39558 4.46751 4.50079 4.58287 4.70547 4.79992 4.87490 5.05818 5.06932 5.09406 5.14052 5.27926 5.28349 5.39753 5.42433 5.67521 5.67882 5.78385 6.42818 6.78002 7.27659 8.51446 Molecular weight = 361.01amu Principal moments of inertia in cm(-1) A = 0.021806 B = 0.002706 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.756994 B =10345.672505 C =11064.181761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.110 3.890 4 N -0.808 5.808 5 C -0.259 4.259 6 H 0.099 0.901 7 C 0.015 3.985 8 N -0.832 5.832 9 Si 0.976 3.024 10 H -0.265 1.265 11 H -0.270 1.270 12 H -0.266 1.266 13 S 2.462 3.538 14 O -1.020 7.020 15 O -1.013 7.013 16 C -0.606 4.606 17 C -0.071 4.071 18 C -0.130 4.130 19 C -0.086 4.086 20 C -0.108 4.108 21 Br -0.035 7.035 22 C -0.086 4.086 23 C -0.127 4.127 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.285 0.715 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.139 0.861 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.661 8.024 -6.842 10.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C -0.016 4.016 4 N -0.631 5.631 5 C -0.408 4.408 6 H 0.116 0.884 7 C -0.199 4.199 8 N -0.470 5.470 9 Si 0.798 3.202 10 H -0.189 1.189 11 H -0.195 1.195 12 H -0.191 1.191 13 S 2.568 3.432 14 O -1.009 7.009 15 O -1.003 7.003 16 C -0.726 4.726 17 C -0.073 4.073 18 C -0.149 4.149 19 C -0.106 4.106 20 C -0.187 4.187 21 Br 0.050 6.950 22 C -0.105 4.105 23 C -0.147 4.147 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.175 0.825 36 H 0.177 0.823 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.194 8.086 -8.285 12.009 hybrid contribution 0.035 0.061 1.350 1.352 sum 3.228 8.147 -6.935 11.175 Atomic orbital electron populations 1.21650 0.93761 1.02237 1.02006 1.21639 0.96728 0.96925 1.00840 1.21664 0.78939 0.98098 1.02902 1.53898 1.12946 1.61832 1.34379 1.19983 1.05909 1.29242 0.85657 0.88374 1.26357 0.96564 0.97145 0.99803 1.69924 1.24908 1.28459 1.23680 0.85123 0.79057 0.78580 0.77432 1.18944 1.19523 1.19082 1.14226 0.73557 0.78241 0.77223 1.93293 1.64426 1.86413 1.56805 1.93293 1.47020 1.72365 1.87605 1.30025 1.07773 1.30849 1.03924 1.19635 0.94440 0.98104 0.95157 1.21387 0.93488 0.99890 1.00156 1.21340 1.01392 0.96019 0.91826 1.21965 0.95155 1.05424 0.96176 1.96670 1.74983 1.80115 1.43241 1.21359 0.92358 0.97899 0.98908 1.21389 1.01372 0.98375 0.93559 0.92369 0.91481 0.92330 0.94127 0.92520 0.88133 0.92067 0.90473 0.85416 0.85070 0.84332 0.82515 0.82311 0.83846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 9.91 71.98 0.71 -3.46 16 2 C -0.12 -4.72 5.98 30.59 0.18 -4.53 16 3 C 0.11 4.68 5.06 86.38 0.44 5.11 16 4 N -0.81 -37.86 2.91 -343.45 -1.00 -38.86 16 5 C -0.26 -12.42 8.63 84.04 0.73 -11.69 16 6 H 0.10 4.92 7.26 -2.91 -0.02 4.90 16 7 C 0.01 0.64 4.63 84.86 0.39 1.03 16 8 N -0.83 -36.82 11.06 21.65 0.24 -36.58 16 9 Si 0.98 35.44 29.61 68.60 2.03 37.47 16 10 H -0.27 -9.82 7.11 99.48 0.71 -9.12 16 11 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 12 H -0.27 -9.29 7.11 99.48 0.71 -8.59 16 13 S 2.46 115.09 5.34 -56.49 -0.30 114.79 16 14 O -1.02 -50.76 16.65 -127.65 -2.13 -52.89 16 15 O -1.01 -53.26 16.82 -127.65 -2.15 -55.40 16 16 C -0.61 -23.46 6.30 71.23 0.45 -23.02 16 17 C -0.07 -2.56 5.14 -19.86 -0.10 -2.67 16 18 C -0.13 -4.30 9.70 22.27 0.22 -4.08 16 19 C -0.09 -2.42 9.79 22.28 0.22 -2.20 16 20 C -0.11 -2.90 6.22 22.31 0.14 -2.76 16 21 Br -0.04 -0.77 33.70 -20.37 -0.69 -1.46 16 22 C -0.09 -2.34 9.79 22.29 0.22 -2.13 16 23 C -0.13 -4.08 9.70 22.27 0.22 -3.86 16 24 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.06 2.29 7.41 -2.39 -0.02 2.27 16 29 H 0.10 4.37 5.52 -2.39 -0.01 4.36 16 30 H 0.06 2.51 7.01 -2.39 -0.02 2.50 16 31 H 0.28 11.57 8.31 -92.71 -0.77 10.80 16 32 H 0.13 4.87 8.09 -2.39 -0.02 4.85 16 33 H 0.13 4.68 8.09 -2.39 -0.02 4.66 16 34 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 35 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 36 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 37 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -58.18 344.76 0.89 -57.29 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 1.07 Total: 29.89 kcal Atomic # 6 Polarization: -58.05 SS G_CDS: 3.81 Total: -54.25 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -0.76 Total: -75.44 kcal Atomic # 8 Polarization: -104.02 SS G_CDS: -4.27 Total: -108.29 kcal Atomic # 14 Polarization: 35.44 SS G_CDS: 2.03 Total: 37.47 kcal Atomic # 16 Polarization: 115.09 SS G_CDS: -0.30 Total: 114.79 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -0.69 Total: -1.46 kcal Total: -58.18 0.89 -57.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170615577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.786 kcal (2) G-P(sol) polarization free energy of solvation -58.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds