Wall clock time and date at job start Tue Mar 31 2020 06:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99903 * 2 1 4 4 C 1.52996 * 109.46684 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47016 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47159 * 180.02562 * 5 4 3 7 7 C 1.34771 * 119.99782 * 180.02562 * 6 5 4 8 8 O 1.21677 * 120.00496 * 5.12509 * 7 6 5 9 9 C 1.46817 * 119.99889 * 185.12605 * 7 6 5 10 10 C 1.39680 * 120.47724 * 75.43224 * 9 7 6 11 11 O 1.34938 * 120.86486 * 359.95741 * 10 9 7 12 12 C 1.46656 * 118.27495 * 179.97438 * 10 9 7 13 13 C 1.39971 * 120.58857 * 180.02562 * 12 10 9 14 14 C 1.36586 * 119.82058 * 179.25229 * 13 12 10 15 15 C 1.38804 * 120.49422 * 0.73696 * 14 13 12 16 16 C 1.37784 * 120.65737 * 359.49378 * 15 14 13 17 17 C 1.39251 * 119.89796 * 0.02562 * 16 15 14 18 18 N 1.37974 * 120.22636 * 180.02562 * 17 16 15 19 19 C 1.46499 * 119.13283 * 0.02562 * 18 17 16 20 20 C 1.50699 * 109.47289 * 269.72866 * 19 18 17 21 21 H 1.07999 * 120.00137 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00121 * 180.02562 * 20 19 18 23 23 N 1.31519 * 120.00044 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00150 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46906 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47407 * 119.99978 * 24 22 20 27 27 H 1.48504 * 109.46948 * 240.00039 * 24 22 20 28 28 C 1.34375 * 121.72835 * 179.74184 * 18 17 16 29 29 O 1.21822 * 119.55441 * 180.28014 * 28 18 17 30 30 H 1.08995 * 109.47472 * 300.00939 * 1 2 3 31 31 H 1.09009 * 109.46701 * 60.00148 * 1 2 3 32 32 H 1.08995 * 109.47296 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47203 * 59.99843 * 3 2 1 34 34 H 1.08994 * 109.47095 * 299.99528 * 3 2 1 35 35 H 1.08995 * 109.47421 * 59.99771 * 4 3 2 36 36 H 1.09004 * 109.47376 * 299.99776 * 4 3 2 37 37 H 1.08998 * 109.46963 * 60.00187 * 5 4 3 38 38 H 1.08994 * 109.47003 * 300.00076 * 5 4 3 39 39 H 0.96999 * 119.99787 * 359.97438 * 6 5 4 40 40 H 0.96699 * 113.99889 * 5.17118 * 11 10 9 41 41 H 1.07997 * 120.08494 * 359.97438 * 13 12 10 42 42 H 1.08009 * 119.74840 * 180.23038 * 14 13 12 43 43 H 1.07995 * 119.67171 * 179.51581 * 15 14 13 44 44 H 1.07997 * 120.05105 * 179.97438 * 16 15 14 45 45 H 1.09002 * 109.47014 * 149.73185 * 19 18 17 46 46 H 1.08998 * 109.47130 * 29.73214 * 19 18 17 47 47 H 0.96993 * 119.99787 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5824 0.0000 6 7 5.6182 2.4667 0.0000 7 6 6.3821 3.5770 0.0000 8 8 5.8624 4.6731 0.0941 9 6 7.8415 3.4639 -0.1136 10 6 8.4356 3.1668 -1.3424 11 8 7.6839 2.9773 -2.4469 12 6 9.8975 3.0659 -1.4010 13 6 10.5433 2.7710 -2.6072 14 6 11.9065 2.6959 -2.6471 15 6 12.6569 2.8947 -1.4964 16 6 12.0417 3.1814 -0.2973 17 6 10.6537 3.2730 -0.2338 18 7 10.0307 3.5602 0.9633 19 6 10.8482 3.7669 2.1613 20 6 11.0453 2.4507 2.8683 21 1 10.6059 1.5502 2.4653 22 6 11.7866 2.3961 4.0295 23 7 12.3221 3.4927 4.5200 24 14 12.0315 0.7645 4.9055 25 1 11.3326 -0.3098 4.1553 26 1 13.4819 0.4548 4.9787 27 1 11.4739 0.8516 6.2791 28 6 8.6940 3.6608 1.0580 29 8 8.1858 3.9211 2.1341 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8464 -0.8900 35 1 3.8574 0.6435 -0.8890 36 1 3.8567 0.6439 0.8909 37 1 3.8359 3.1238 0.8895 38 1 3.8365 3.1227 -0.8904 39 1 6.0353 1.5909 0.0008 40 1 6.7407 3.1439 -2.3140 41 1 9.9659 2.6149 -3.5064 42 1 12.4039 2.4719 -3.5794 43 1 13.7336 2.8245 -1.5415 44 1 12.6351 3.3339 0.5921 45 1 10.3444 4.4660 2.8288 46 1 11.8177 4.1737 1.8738 47 1 12.8433 3.4543 5.3371 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170624754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:53 Heat of formation + Delta-G solvation = -116.554856 kcal Electronic energy + Delta-G solvation = -32038.979541 eV Core-core repulsion = 27573.300666 eV Total energy + Delta-G solvation = -4465.678875 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.156 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.08143 -39.58306 -38.54626 -38.33530 -37.78782 -35.50028 -35.16708 -33.37402 -32.40906 -32.01501 -30.18524 -29.37691 -27.62466 -27.30057 -25.52689 -24.16567 -23.65589 -22.66186 -22.03268 -21.21808 -20.81161 -18.92268 -18.53368 -18.00127 -16.95843 -16.77821 -16.66268 -16.24786 -15.84708 -15.72641 -15.36471 -15.19856 -15.05035 -14.84153 -14.52647 -14.26011 -14.05821 -13.96348 -13.90109 -13.80962 -13.10345 -12.95117 -12.65426 -12.56752 -12.35293 -12.25462 -12.20526 -11.55411 -11.48774 -11.46147 -11.39558 -11.19071 -10.97038 -10.67407 -10.39588 -10.26237 -10.05433 -10.04208 -9.57871 -9.38173 -9.26596 -9.18292 -8.58938 -8.19189 -7.47548 -6.20825 -4.27140 0.58750 1.50779 2.00689 2.46504 2.93865 3.22537 3.22678 3.30654 3.33714 3.43897 3.50722 3.63018 4.20405 4.35033 4.51858 4.57431 4.72471 4.75006 4.76649 4.95289 4.98015 4.99573 5.06446 5.09043 5.14932 5.16746 5.20342 5.29719 5.38757 5.45937 5.60184 5.62723 5.75759 5.78041 5.86868 6.03871 6.29262 6.32020 6.45416 6.60512 6.75805 6.78209 6.95539 7.06322 7.13907 7.23112 7.39127 7.73817 7.93549 7.98319 8.18797 8.65299 8.78101 9.38297 10.87531 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.008336 B = 0.002935 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.245164 B = 9537.297242 C =11585.385634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.065 3.935 4 C -0.132 4.132 5 C 0.121 3.879 6 N -0.728 5.728 7 C 0.590 3.410 8 O -0.520 6.520 9 C -0.357 4.357 10 C 0.266 3.734 11 O -0.453 6.453 12 C -0.154 4.154 13 C -0.043 4.043 14 C -0.171 4.171 15 C -0.058 4.058 16 C -0.154 4.154 17 C 0.238 3.762 18 N -0.503 5.503 19 C 0.224 3.776 20 C -0.531 4.531 21 H 0.061 0.939 22 C 0.066 3.934 23 N -0.889 5.889 24 Si 0.903 3.097 25 H -0.272 1.272 26 H -0.281 1.281 27 H -0.281 1.281 28 C 0.565 3.435 29 O -0.517 6.517 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.405 0.595 40 H 0.403 0.597 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.129 0.871 44 H 0.154 0.846 45 H 0.060 0.940 46 H 0.051 0.949 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.001 -5.169 -16.898 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.012 4.012 4 C -0.170 4.170 5 C -0.002 4.002 6 N -0.382 5.382 7 C 0.376 3.624 8 O -0.395 6.395 9 C -0.365 4.365 10 C 0.213 3.787 11 O -0.254 6.254 12 C -0.158 4.158 13 C -0.062 4.062 14 C -0.191 4.191 15 C -0.077 4.077 16 C -0.174 4.174 17 C 0.132 3.868 18 N -0.216 5.216 19 C 0.107 3.893 20 C -0.569 4.569 21 H 0.080 0.920 22 C -0.137 4.137 23 N -0.527 5.527 24 Si 0.730 3.270 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.207 1.207 28 C 0.359 3.641 29 O -0.394 6.394 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.240 0.760 40 H 0.257 0.743 41 H 0.150 0.850 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.172 0.828 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.017 -4.409 -16.219 20.662 hybrid contribution -0.509 -0.967 0.835 1.376 sum -12.526 -5.376 -15.384 20.554 Atomic orbital electron populations 1.22749 0.80784 1.02849 1.00087 1.87868 1.19897 1.27885 1.95471 1.22378 0.93258 0.84831 1.00764 1.21688 0.93875 0.96972 1.04493 1.21195 0.79688 0.96459 1.02903 1.46077 1.06517 1.09312 1.76276 1.17357 0.85300 0.83984 0.75755 1.90805 1.74500 1.26804 1.47401 1.21763 0.93934 1.26103 0.94705 1.20377 0.90100 0.84786 0.83477 1.84594 1.24143 1.83383 1.33305 1.17765 0.87679 1.15666 0.94660 1.20721 0.94713 0.95134 0.95605 1.20686 0.93639 1.05951 0.98780 1.21203 1.00207 0.94584 0.91714 1.21226 0.91877 1.04238 1.00041 1.17954 0.92612 0.91736 0.84465 1.45896 1.07286 1.58691 1.09706 1.19877 0.90139 0.99249 0.80029 1.21253 1.33308 0.93235 1.09132 0.92032 1.24902 0.95134 0.97115 0.96553 1.69931 1.33953 1.27152 1.21678 0.86361 0.77837 0.83184 0.79640 1.19644 1.20712 1.20701 1.16977 0.80981 0.78385 0.87766 1.90892 1.72226 1.47972 1.28352 0.93932 0.94019 0.89555 0.92758 0.92884 0.90217 0.90009 0.90910 0.91182 0.76023 0.74272 0.85039 0.85730 0.85268 0.82841 0.92208 0.93161 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.71 10.70 -35.23 -0.38 -4.08 16 3 C 0.06 0.51 5.94 37.16 0.22 0.73 16 4 C -0.13 -1.09 5.70 -26.73 -0.15 -1.24 16 5 C 0.12 1.22 5.68 -4.04 -0.02 1.20 16 6 N -0.73 -9.10 5.50 -61.58 -0.34 -9.44 16 7 C 0.59 10.08 5.45 -12.79 -0.07 10.01 16 8 O -0.52 -10.59 17.12 5.21 0.09 -10.50 16 9 C -0.36 -6.55 5.80 -102.68 -0.60 -7.15 16 10 C 0.27 4.05 7.13 -35.65 -0.25 3.79 16 11 O -0.45 -5.19 12.91 -16.53 -0.21 -5.40 16 12 C -0.15 -2.44 5.88 -104.96 -0.62 -3.06 16 13 C -0.04 -0.55 9.60 -39.53 -0.38 -0.93 16 14 C -0.17 -1.97 9.97 -39.97 -0.40 -2.37 16 15 C -0.06 -0.74 10.01 -39.54 -0.40 -1.14 16 16 C -0.15 -2.56 9.16 -39.37 -0.36 -2.92 16 17 C 0.24 4.44 6.53 -83.83 -0.55 3.89 16 18 N -0.50 -11.25 2.62 -116.37 -0.30 -11.56 16 19 C 0.22 5.72 4.51 -5.19 -0.02 5.69 16 20 C -0.53 -14.47 9.38 -34.44 -0.32 -14.80 16 21 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 23 N -0.89 -25.25 13.29 55.43 0.74 -24.52 16 24 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.57 13.08 7.57 -13.23 -0.10 12.98 16 29 O -0.52 -14.05 16.05 5.08 0.08 -13.97 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.04 0.22 8.14 -51.92 -0.42 -0.20 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.40 4.41 8.46 -40.82 -0.35 4.06 16 40 H 0.40 3.61 7.42 45.56 0.34 3.94 16 41 H 0.13 1.36 7.68 -52.49 -0.40 0.96 16 42 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 43 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.15 2.78 6.06 -52.49 -0.32 2.46 16 45 H 0.06 1.72 7.33 -51.93 -0.38 1.34 16 46 H 0.05 1.24 6.07 -51.93 -0.31 0.92 16 47 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 402.36 15.07 6.06 6.06 Total: -1.00 -35.81 402.36 -7.91 -43.71 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.62 Total: 5.78 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -3.01 Total: 7.74 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.09 Total: -45.51 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -0.42 Total: -33.95 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.81 -7.91 -43.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170624754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.841 kcal (2) G-P(sol) polarization free energy of solvation -35.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds