Wall clock time and date at job start Tue Mar 31 2020 06:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99903 * 2 1 4 4 C 1.52996 * 109.46684 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47016 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47159 * 180.02562 * 5 4 3 7 7 C 1.34771 * 119.99782 * 180.02562 * 6 5 4 8 8 O 1.21677 * 120.00496 * 5.12509 * 7 6 5 9 9 C 1.46817 * 119.99889 * 185.12605 * 7 6 5 10 10 C 1.39680 * 120.47724 * 75.43224 * 9 7 6 11 11 O 1.34938 * 120.86486 * 359.95741 * 10 9 7 12 12 C 1.46656 * 118.27495 * 179.97438 * 10 9 7 13 13 C 1.39971 * 120.58857 * 180.02562 * 12 10 9 14 14 C 1.36586 * 119.82058 * 179.25229 * 13 12 10 15 15 C 1.38804 * 120.49422 * 0.73696 * 14 13 12 16 16 C 1.37784 * 120.65737 * 359.49378 * 15 14 13 17 17 C 1.39251 * 119.89796 * 0.02562 * 16 15 14 18 18 N 1.37974 * 120.22636 * 180.02562 * 17 16 15 19 19 C 1.46499 * 119.13283 * 0.02562 * 18 17 16 20 20 C 1.50699 * 109.47289 * 269.72866 * 19 18 17 21 21 H 1.07999 * 120.00137 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00121 * 180.02562 * 20 19 18 23 23 N 1.31519 * 120.00044 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00150 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46906 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47407 * 119.99978 * 24 22 20 27 27 H 1.48504 * 109.46948 * 240.00039 * 24 22 20 28 28 C 1.34375 * 121.72835 * 179.74184 * 18 17 16 29 29 O 1.21822 * 119.55441 * 180.28014 * 28 18 17 30 30 H 1.08995 * 109.47472 * 300.00939 * 1 2 3 31 31 H 1.09009 * 109.46701 * 60.00148 * 1 2 3 32 32 H 1.08995 * 109.47296 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47203 * 59.99843 * 3 2 1 34 34 H 1.08994 * 109.47095 * 299.99528 * 3 2 1 35 35 H 1.08995 * 109.47421 * 59.99771 * 4 3 2 36 36 H 1.09004 * 109.47376 * 299.99776 * 4 3 2 37 37 H 1.08998 * 109.46963 * 60.00187 * 5 4 3 38 38 H 1.08994 * 109.47003 * 300.00076 * 5 4 3 39 39 H 0.96999 * 119.99787 * 359.97438 * 6 5 4 40 40 H 0.96699 * 113.99889 * 5.17118 * 11 10 9 41 41 H 1.07997 * 120.08494 * 359.97438 * 13 12 10 42 42 H 1.08009 * 119.74840 * 180.23038 * 14 13 12 43 43 H 1.07995 * 119.67171 * 179.51581 * 15 14 13 44 44 H 1.07997 * 120.05105 * 179.97438 * 16 15 14 45 45 H 1.09002 * 109.47014 * 149.73185 * 19 18 17 46 46 H 1.08998 * 109.47130 * 29.73214 * 19 18 17 47 47 H 0.96993 * 119.99787 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5824 0.0000 6 7 5.6182 2.4667 0.0000 7 6 6.3821 3.5770 0.0000 8 8 5.8624 4.6731 0.0941 9 6 7.8415 3.4639 -0.1136 10 6 8.4356 3.1668 -1.3424 11 8 7.6839 2.9773 -2.4469 12 6 9.8975 3.0659 -1.4010 13 6 10.5433 2.7710 -2.6072 14 6 11.9065 2.6959 -2.6471 15 6 12.6569 2.8947 -1.4964 16 6 12.0417 3.1814 -0.2973 17 6 10.6537 3.2730 -0.2338 18 7 10.0307 3.5602 0.9633 19 6 10.8482 3.7669 2.1613 20 6 11.0453 2.4507 2.8683 21 1 10.6059 1.5502 2.4653 22 6 11.7866 2.3961 4.0295 23 7 12.3221 3.4927 4.5200 24 14 12.0315 0.7645 4.9055 25 1 11.3326 -0.3098 4.1553 26 1 13.4819 0.4548 4.9787 27 1 11.4739 0.8516 6.2791 28 6 8.6940 3.6608 1.0580 29 8 8.1858 3.9211 2.1341 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8464 -0.8900 35 1 3.8574 0.6435 -0.8890 36 1 3.8567 0.6439 0.8909 37 1 3.8359 3.1238 0.8895 38 1 3.8365 3.1227 -0.8904 39 1 6.0353 1.5909 0.0008 40 1 6.7407 3.1439 -2.3140 41 1 9.9659 2.6149 -3.5064 42 1 12.4039 2.4719 -3.5794 43 1 13.7336 2.8245 -1.5415 44 1 12.6351 3.3339 0.5921 45 1 10.3444 4.4660 2.8288 46 1 11.8177 4.1737 1.8738 47 1 12.8433 3.4543 5.3371 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170624754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:52 Heat of formation + Delta-G solvation = -144.785881 kcal Electronic energy + Delta-G solvation = -32040.203730 eV Core-core repulsion = 27573.300666 eV Total energy + Delta-G solvation = -4466.903064 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.156 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.49223 -40.86077 -39.90316 -39.16156 -38.87815 -36.83821 -36.50580 -35.16086 -33.91440 -33.01663 -31.41963 -30.69375 -29.44398 -28.03649 -26.40410 -25.69946 -25.05624 -24.03511 -22.78801 -22.57623 -22.10844 -20.20896 -19.87225 -19.21753 -18.86341 -17.77310 -17.50668 -17.38501 -17.31883 -16.79957 -16.65419 -16.52876 -16.15264 -16.01084 -15.77853 -15.44458 -15.38185 -15.32267 -15.06668 -14.92885 -14.50840 -14.40073 -14.17037 -13.91964 -13.41399 -13.38859 -13.10220 -13.01403 -12.79626 -12.69110 -12.59812 -12.38381 -12.11664 -12.08201 -12.06550 -12.02065 -11.44055 -11.18063 -11.05722 -10.72589 -10.67488 -10.63889 -10.29815 -9.46118 -8.98219 -8.31178 -6.47110 -0.65711 0.26450 0.76935 1.10343 1.34306 1.37204 1.48897 1.78185 2.01652 2.04211 2.16960 2.34923 2.85675 2.91841 2.99204 3.38329 3.41801 3.76075 3.87789 3.91622 4.03712 4.07650 4.11933 4.31791 4.36308 4.41600 4.45865 4.48354 4.49932 4.55888 4.62667 4.68717 4.79485 4.86009 4.93431 5.00279 5.04300 5.05570 5.13915 5.26357 5.38291 5.44148 5.56454 5.63530 5.85310 5.90759 5.99744 6.19628 6.25775 6.37042 6.57808 6.96717 7.01694 7.23304 8.76773 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.008336 B = 0.002935 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.245164 B = 9537.297242 C =11585.385634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.063 3.937 4 C -0.121 4.121 5 C 0.121 3.879 6 N -0.708 5.708 7 C 0.593 3.407 8 O -0.563 6.563 9 C -0.391 4.391 10 C 0.308 3.692 11 O -0.425 6.425 12 C -0.163 4.163 13 C -0.030 4.030 14 C -0.149 4.149 15 C -0.038 4.038 16 C -0.180 4.180 17 C 0.200 3.800 18 N -0.515 5.515 19 C 0.244 3.756 20 C -0.542 4.542 21 H 0.051 0.949 22 C 0.016 3.984 23 N -0.921 5.921 24 Si 0.971 3.029 25 H -0.268 1.268 26 H -0.262 1.262 27 H -0.282 1.282 28 C 0.550 3.450 29 O -0.586 6.586 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.090 0.910 39 H 0.414 0.586 40 H 0.419 0.581 41 H 0.169 0.831 42 H 0.175 0.825 43 H 0.164 0.836 44 H 0.126 0.874 45 H 0.009 0.991 46 H 0.051 0.949 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.507 -7.721 -21.381 25.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.014 4.014 4 C -0.159 4.159 5 C -0.002 4.002 6 N -0.361 5.361 7 C 0.378 3.622 8 O -0.442 6.442 9 C -0.399 4.399 10 C 0.252 3.748 11 O -0.227 6.227 12 C -0.167 4.167 13 C -0.049 4.049 14 C -0.168 4.168 15 C -0.056 4.056 16 C -0.201 4.201 17 C 0.097 3.903 18 N -0.229 5.229 19 C 0.124 3.876 20 C -0.580 4.580 21 H 0.069 0.931 22 C -0.184 4.184 23 N -0.560 5.560 24 Si 0.794 3.206 25 H -0.193 1.193 26 H -0.187 1.187 27 H -0.208 1.208 28 C 0.347 3.653 29 O -0.470 6.470 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.251 0.749 40 H 0.276 0.724 41 H 0.186 0.814 42 H 0.192 0.808 43 H 0.181 0.819 44 H 0.144 0.856 45 H 0.027 0.973 46 H 0.069 0.931 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.526 -7.017 -20.797 24.791 hybrid contribution -0.575 -0.204 1.966 2.059 sum -12.101 -7.221 -18.830 23.519 Atomic orbital electron populations 1.22925 0.79378 1.03821 1.00933 1.87820 1.21550 1.28602 1.95657 1.22412 0.92718 0.84637 1.01612 1.21571 0.94275 0.95428 1.04641 1.21340 0.78005 0.97857 1.02976 1.45974 1.07425 1.08546 1.74176 1.17264 0.85055 0.84280 0.75573 1.90767 1.75098 1.28497 1.49811 1.21441 0.94106 1.30049 0.94306 1.20215 0.90242 0.81283 0.83037 1.84591 1.25270 1.81931 1.30934 1.18031 0.87817 1.15873 0.94947 1.21207 0.95671 0.92982 0.94997 1.21259 0.93132 1.02563 0.99808 1.21643 1.02113 0.91489 0.90398 1.21177 0.91089 1.06704 1.01114 1.18374 0.93751 0.94216 0.83964 1.45645 1.07013 1.59970 1.10249 1.19300 0.89778 0.97540 0.80955 1.21389 1.33364 0.93367 1.09845 0.93084 1.25800 0.94645 1.00840 0.97108 1.70040 1.34512 1.29267 1.22201 0.85322 0.78651 0.78660 0.77935 1.19264 1.18689 1.20752 1.17711 0.81429 0.77575 0.88570 1.90820 1.73392 1.51784 1.30976 0.93513 0.92744 0.88624 0.92868 0.91145 0.88720 0.91175 0.92794 0.89203 0.74925 0.72378 0.81371 0.80767 0.81868 0.85647 0.97337 0.93141 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.35 10.70 -148.98 -1.59 -8.94 16 3 C 0.06 0.91 5.94 71.98 0.43 1.34 16 4 C -0.12 -1.85 5.70 30.59 0.17 -1.68 16 5 C 0.12 2.38 5.68 86.38 0.49 2.87 16 6 N -0.71 -17.66 5.50 -466.95 -2.57 -20.23 16 7 C 0.59 20.88 5.45 86.49 0.47 21.35 16 8 O -0.56 -23.97 17.12 -4.28 -0.07 -24.04 16 9 C -0.39 -14.87 5.80 -18.61 -0.11 -14.98 16 10 C 0.31 8.89 7.13 24.82 0.18 9.07 16 11 O -0.43 -8.09 12.91 -82.07 -1.06 -9.15 16 12 C -0.16 -4.86 5.88 -20.08 -0.12 -4.98 16 13 C -0.03 -0.61 9.60 22.30 0.21 -0.39 16 14 C -0.15 -2.51 9.97 22.02 0.22 -2.29 16 15 C -0.04 -0.83 10.01 22.30 0.22 -0.60 16 16 C -0.18 -6.04 9.16 22.41 0.21 -5.83 16 17 C 0.20 7.61 6.53 39.00 0.25 7.86 16 18 N -0.52 -24.91 2.62 -640.48 -1.68 -26.59 16 19 C 0.24 13.62 4.51 85.63 0.39 14.01 16 20 C -0.54 -31.47 9.38 25.60 0.24 -31.23 16 21 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 22 C 0.02 0.93 5.46 84.65 0.46 1.39 16 23 N -0.92 -54.88 13.29 21.45 0.28 -54.60 16 24 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 27 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 28 C 0.55 27.63 7.57 86.38 0.65 28.28 16 29 O -0.59 -35.29 16.05 -4.74 -0.08 -35.37 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.41 8.79 8.46 -92.71 -0.78 8.01 16 40 H 0.42 6.04 7.42 -74.06 -0.55 5.49 16 41 H 0.17 2.24 7.68 -2.91 -0.02 2.21 16 42 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 43 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 44 H 0.13 4.85 6.06 -2.91 -0.02 4.83 16 45 H 0.01 0.55 7.33 -2.39 -0.02 0.53 16 46 H 0.05 2.74 6.07 -2.39 -0.01 2.73 16 47 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -87.93 402.36 0.59 -87.34 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -0.30 Total: 19.25 kcal Atomic # 6 Polarization: 20.10 SS G_CDS: 5.62 Total: 25.72 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -3.96 Total: -101.42 kcal Atomic # 8 Polarization: -74.70 SS G_CDS: -2.80 Total: -77.50 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -87.93 0.59 -87.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170624754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.441 kcal (2) G-P(sol) polarization free energy of solvation -87.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds