Wall clock time and date at job start Tue Mar 31 2020 05:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38565 * 119.96823 * 2 1 4 4 N 1.33399 * 133.64823 * 359.97438 * 3 2 1 5 5 C 1.31760 * 109.96425 * 180.02562 * 4 3 2 6 6 N 1.37604 * 125.30078 * 179.97438 * 5 4 3 7 7 C 1.46496 * 120.00203 * 0.02562 * 6 5 4 8 8 C 1.50696 * 109.47436 * 180.02562 * 7 6 5 9 9 C 1.34512 * 125.79090 * 90.02309 * 8 7 6 10 10 C 1.41379 * 106.84332 * 180.02562 * 9 8 7 11 11 C 1.34512 * 106.84086 * 0.02562 * 10 9 8 12 12 O 1.34301 * 125.79037 * 270.02905 * 8 7 6 13 13 N 1.35932 * 109.39594 * 0.24237 * 5 4 3 14 14 C 1.46498 * 126.63199 * 179.75531 * 13 5 4 15 15 C 1.50707 * 109.47065 * 90.02381 * 14 13 5 16 16 H 1.07995 * 120.00272 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99819 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99860 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00012 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.46973 * 89.99931 * 19 17 15 21 21 H 1.48497 * 109.46824 * 209.99942 * 19 17 15 22 22 H 1.48500 * 109.47010 * 329.99641 * 19 17 15 23 23 C 1.38843 * 106.73387 * 359.61766 * 13 5 4 24 24 C 1.40603 * 134.42345 * 180.02562 * 23 13 5 25 25 O 1.21874 * 120.35175 * 0.31970 * 24 23 13 26 26 N 1.34907 * 119.30255 * 180.32337 * 24 23 13 27 27 C 1.46505 * 119.50113 * 179.97438 * 26 24 23 28 28 C 1.34417 * 121.00026 * 0.02562 * 26 24 23 29 29 O 1.21599 * 119.19368 * 180.02562 * 28 26 24 30 30 H 1.08998 * 109.47826 * 89.99234 * 1 2 3 31 31 H 1.08999 * 109.46849 * 209.99796 * 1 2 3 32 32 H 1.09005 * 109.47088 * 329.99363 * 1 2 3 33 33 H 0.96997 * 119.99526 * 180.02562 * 6 5 4 34 34 H 1.09003 * 109.46817 * 60.00304 * 7 6 5 35 35 H 1.09005 * 109.46911 * 300.00858 * 7 6 5 36 36 H 1.08007 * 126.58064 * 359.97438 * 9 8 7 37 37 H 1.07996 * 126.58354 * 180.02562 * 10 9 8 38 38 H 1.07998 * 125.79383 * 179.97438 * 11 10 9 39 39 H 1.08995 * 109.47035 * 210.02222 * 14 13 5 40 40 H 1.09005 * 109.47552 * 330.02889 * 14 13 5 41 41 H 0.97001 * 120.00301 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.47189 * 180.02562 * 27 26 24 43 43 H 1.08988 * 109.47494 * 300.02384 * 27 26 24 44 44 H 1.09004 * 109.46889 * 60.02416 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1571 1.2004 0.0000 4 7 1.7809 2.4802 -0.0004 5 6 2.8421 3.2611 -0.0007 6 7 2.8170 4.6369 -0.0017 7 6 1.5351 5.3462 -0.0020 8 6 1.7833 6.8325 -0.0037 9 6 1.9120 7.6073 -1.0957 10 6 2.1332 8.9266 -0.6382 11 6 2.1271 8.8791 0.7060 12 8 1.9137 7.6084 1.0848 13 7 3.9656 2.4960 -0.0060 14 6 5.3498 2.9757 -0.0130 15 6 5.8317 3.1402 1.4054 16 1 5.1730 2.9101 2.2297 17 6 7.1140 3.5836 1.6508 18 7 7.5347 3.7267 2.8885 19 14 8.2538 3.9809 0.2250 20 1 8.0978 5.4093 -0.1501 21 1 9.6597 3.7260 0.6294 22 1 7.9098 3.1233 -0.9375 23 6 3.5476 1.1720 -0.0001 24 6 4.2089 -0.0688 -0.0007 25 8 5.4267 -0.1177 -0.0019 26 7 3.4812 -1.2048 -0.0001 27 6 4.1658 -2.5001 -0.0014 28 6 2.1376 -1.1663 0.0005 29 8 1.5143 -2.2104 0.0015 30 1 -0.3635 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5140 33 1 3.6480 5.1371 -0.0023 34 1 0.9687 5.0731 0.8884 35 1 0.9682 5.0717 -0.8916 36 1 1.8576 7.2836 -2.1247 37 1 2.2792 9.8042 -1.2505 38 1 2.2691 9.7202 1.3685 39 1 5.9819 2.2537 -0.5300 40 1 5.3992 3.9356 -0.5271 41 1 8.4367 4.0390 3.0612 42 1 3.4270 -3.3015 -0.0012 43 1 4.7890 -2.5809 -0.8919 44 1 4.7906 -2.5817 0.8880 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170624822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:02 Heat of formation + Delta-G solvation = 60.157090 kcal Electronic energy + Delta-G solvation = -32481.292021 eV Core-core repulsion = 28017.454269 eV Total energy + Delta-G solvation = -4463.837751 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.143 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.68879 -42.45759 -40.69131 -38.58851 -36.61111 -35.50780 -34.88735 -33.90065 -33.08507 -32.21102 -30.88148 -29.71986 -28.06322 -27.11574 -26.45160 -25.53673 -23.42329 -22.90654 -22.31885 -21.87205 -20.69125 -20.23225 -18.97200 -18.17759 -17.44119 -17.33961 -16.84072 -16.82348 -16.54457 -16.08105 -15.37891 -15.24323 -15.08803 -14.88100 -14.70762 -14.58240 -14.30511 -14.08826 -13.61096 -13.35739 -12.95271 -12.93207 -12.78972 -12.67181 -12.63084 -12.38496 -12.23321 -12.20527 -12.03268 -11.51436 -10.93736 -10.83307 -10.73577 -10.37843 -10.08804 -10.04885 -9.83557 -9.59715 -9.53015 -9.31692 -8.82725 -8.72717 -8.68022 -7.08328 -6.31266 -4.35691 1.44255 1.54190 2.02220 2.30632 2.36943 2.69645 2.89819 3.10090 3.19022 3.20134 3.22524 3.34060 3.78181 3.89074 4.18112 4.44862 4.57334 4.83869 4.88330 4.91887 4.98037 5.30097 5.30536 5.40225 5.43803 5.47691 5.54332 5.61591 5.65459 5.75826 5.77121 5.79392 5.80658 5.85679 5.93967 6.10934 6.30017 6.33832 6.55659 6.81058 7.01266 7.03064 7.14345 7.20687 7.51695 7.73930 7.87523 8.15615 8.21195 8.37237 8.70372 9.23353 10.80895 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.007804 B = 0.004194 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3586.871907 B = 6674.202771 C = 9691.949906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.509 5.509 3 C 0.321 3.679 4 N -0.546 5.546 5 C 0.546 3.454 6 N -0.700 5.700 7 C 0.231 3.769 8 C -0.033 4.033 9 C -0.184 4.184 10 C -0.222 4.222 11 C -0.027 4.027 12 O -0.167 6.167 13 N -0.406 5.406 14 C 0.210 3.790 15 C -0.541 4.541 16 H 0.081 0.919 17 C 0.085 3.915 18 N -0.882 5.882 19 Si 0.869 3.131 20 H -0.272 1.272 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.151 4.151 24 C 0.587 3.413 25 O -0.500 6.500 26 N -0.556 5.556 27 C 0.087 3.913 28 C 0.710 3.290 29 O -0.556 6.556 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.420 0.580 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.203 0.797 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.269 0.731 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.521 3.748 -8.331 16.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.237 5.237 3 C 0.088 3.912 4 N -0.280 5.280 5 C 0.192 3.808 6 N -0.345 5.345 7 C 0.107 3.893 8 C -0.084 4.084 9 C -0.204 4.204 10 C -0.241 4.241 11 C -0.096 4.096 12 O -0.062 6.062 13 N -0.093 5.093 14 C 0.090 3.910 15 C -0.579 4.579 16 H 0.099 0.901 17 C -0.120 4.120 18 N -0.518 5.518 19 Si 0.695 3.305 20 H -0.197 1.197 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.268 4.268 24 C 0.383 3.617 25 O -0.374 6.374 26 N -0.301 5.301 27 C -0.054 4.054 28 C 0.413 3.587 29 O -0.432 6.432 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.259 0.741 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.220 0.780 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.118 0.882 43 H 0.094 0.906 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.807 3.355 -7.911 16.262 hybrid contribution 2.010 0.653 -0.650 2.211 sum -11.797 4.008 -8.561 15.117 Atomic orbital electron populations 1.21837 0.75120 1.04493 1.03175 1.43652 1.08286 1.01093 1.70632 1.17617 0.87068 0.86593 0.99884 1.69469 1.26522 0.98115 1.33910 1.18629 0.81193 0.85054 0.95960 1.43137 1.09316 0.98808 1.83277 1.19413 0.84940 0.80611 1.04292 1.22307 1.07976 0.93641 0.84460 1.21705 1.06041 0.93096 0.99558 1.21857 1.08832 0.98510 0.94868 1.24138 1.04209 0.85063 0.96176 1.84084 1.69053 1.18161 1.34896 1.44894 1.08101 1.02301 1.53996 1.20255 0.74538 0.95662 1.00537 1.21005 0.99931 1.47232 0.89744 0.90132 1.24751 0.97224 0.94326 0.95747 1.69857 1.18379 1.44756 1.18824 0.86947 0.81269 0.79147 0.83127 1.19735 1.20310 1.18634 1.18244 0.92246 0.86637 1.29629 1.15363 0.86926 0.82172 0.77288 1.90943 1.12199 1.86775 1.47472 1.45829 1.05731 1.09837 1.68735 1.21845 0.97849 0.81963 1.03752 1.15404 0.81601 0.83245 0.78428 1.90948 1.66192 1.29376 1.56654 0.91521 0.89467 0.89291 0.74114 0.89738 0.88411 0.83164 0.83357 0.77996 0.91879 0.94438 0.92052 0.88241 0.90585 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.12 10.39 59.85 0.62 1.74 16 2 N -0.51 -8.14 3.06 -128.30 -0.39 -8.53 16 3 C 0.32 5.84 7.63 -154.61 -1.18 4.66 16 4 N -0.55 -9.48 10.72 -12.75 -0.14 -9.62 16 5 C 0.55 9.94 8.45 -320.32 -2.71 7.23 16 6 N -0.70 -10.65 5.66 -63.02 -0.36 -11.01 16 7 C 0.23 2.74 6.48 -5.20 -0.03 2.71 16 8 C -0.03 -0.40 6.69 -35.63 -0.24 -0.63 16 9 C -0.18 -1.94 10.81 -39.70 -0.43 -2.37 16 10 C -0.22 -2.16 10.91 -39.70 -0.43 -2.59 16 11 C -0.03 -0.27 12.09 29.42 0.36 0.08 16 12 O -0.17 -2.12 10.65 5.71 0.06 -2.06 16 13 N -0.41 -8.58 2.82 -116.16 -0.33 -8.91 16 14 C 0.21 4.83 4.56 -5.19 -0.02 4.81 16 15 C -0.54 -14.76 9.94 -34.44 -0.34 -15.10 16 16 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 17 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 18 N -0.88 -26.00 13.96 55.43 0.77 -25.22 16 19 Si 0.87 20.20 27.47 -169.99 -4.67 15.53 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 23 C -0.15 -3.14 6.91 -83.48 -0.58 -3.72 16 24 C 0.59 12.24 7.42 -15.31 -0.11 12.13 16 25 O -0.50 -11.85 15.99 5.03 0.08 -11.76 16 26 N -0.56 -9.76 2.96 -131.80 -0.39 -10.15 16 27 C 0.09 1.21 9.99 59.85 0.60 1.81 16 28 C 0.71 12.03 8.12 -87.37 -0.71 11.32 16 29 O -0.56 -9.57 15.02 5.28 0.08 -9.49 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.96 7.38 -51.93 -0.38 0.58 16 32 H 0.09 0.97 8.00 -51.93 -0.42 0.55 16 33 H 0.42 6.60 7.65 -40.82 -0.31 6.28 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.20 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.06 1.56 6.34 -51.93 -0.33 1.23 16 40 H 0.04 0.78 6.90 -51.93 -0.36 0.43 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.10 1.23 6.80 -51.93 -0.35 0.88 16 43 H 0.08 0.97 8.14 -51.94 -0.42 0.55 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 379.23 15.07 5.71 5.71 Total: -1.00 -34.36 379.23 -10.00 -44.35 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.12 Total: 6.83 kcal Atomic # 6 Polarization: 29.63 SS G_CDS: -5.31 Total: 24.32 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -0.83 Total: -73.44 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.22 Total: -23.32 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.67 Total: 15.53 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.36 -10.00 -44.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170624822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.510 kcal (2) G-P(sol) polarization free energy of solvation -34.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds