Wall clock time and date at job start Tue Mar 31 2020 05:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38565 * 119.96823 * 2 1 4 4 N 1.33399 * 133.64823 * 359.97438 * 3 2 1 5 5 C 1.31760 * 109.96425 * 180.02562 * 4 3 2 6 6 N 1.37604 * 125.30078 * 179.97438 * 5 4 3 7 7 C 1.46496 * 120.00203 * 0.02562 * 6 5 4 8 8 C 1.50696 * 109.47436 * 180.02562 * 7 6 5 9 9 C 1.34512 * 125.79090 * 90.02309 * 8 7 6 10 10 C 1.41379 * 106.84332 * 180.02562 * 9 8 7 11 11 C 1.34512 * 106.84086 * 0.02562 * 10 9 8 12 12 O 1.34301 * 125.79037 * 270.02905 * 8 7 6 13 13 N 1.35932 * 109.39594 * 0.24237 * 5 4 3 14 14 C 1.46498 * 126.63199 * 179.75531 * 13 5 4 15 15 C 1.50707 * 109.47065 * 90.02381 * 14 13 5 16 16 H 1.07995 * 120.00272 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99819 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99860 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00012 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.46973 * 89.99931 * 19 17 15 21 21 H 1.48497 * 109.46824 * 209.99942 * 19 17 15 22 22 H 1.48500 * 109.47010 * 329.99641 * 19 17 15 23 23 C 1.38843 * 106.73387 * 359.61766 * 13 5 4 24 24 C 1.40603 * 134.42345 * 180.02562 * 23 13 5 25 25 O 1.21874 * 120.35175 * 0.31970 * 24 23 13 26 26 N 1.34907 * 119.30255 * 180.32337 * 24 23 13 27 27 C 1.46505 * 119.50113 * 179.97438 * 26 24 23 28 28 C 1.34417 * 121.00026 * 0.02562 * 26 24 23 29 29 O 1.21599 * 119.19368 * 180.02562 * 28 26 24 30 30 H 1.08998 * 109.47826 * 89.99234 * 1 2 3 31 31 H 1.08999 * 109.46849 * 209.99796 * 1 2 3 32 32 H 1.09005 * 109.47088 * 329.99363 * 1 2 3 33 33 H 0.96997 * 119.99526 * 180.02562 * 6 5 4 34 34 H 1.09003 * 109.46817 * 60.00304 * 7 6 5 35 35 H 1.09005 * 109.46911 * 300.00858 * 7 6 5 36 36 H 1.08007 * 126.58064 * 359.97438 * 9 8 7 37 37 H 1.07996 * 126.58354 * 180.02562 * 10 9 8 38 38 H 1.07998 * 125.79383 * 179.97438 * 11 10 9 39 39 H 1.08995 * 109.47035 * 210.02222 * 14 13 5 40 40 H 1.09005 * 109.47552 * 330.02889 * 14 13 5 41 41 H 0.97001 * 120.00301 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.47189 * 180.02562 * 27 26 24 43 43 H 1.08988 * 109.47494 * 300.02384 * 27 26 24 44 44 H 1.09004 * 109.46889 * 60.02416 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1571 1.2004 0.0000 4 7 1.7809 2.4802 -0.0004 5 6 2.8421 3.2611 -0.0007 6 7 2.8170 4.6369 -0.0017 7 6 1.5351 5.3462 -0.0020 8 6 1.7833 6.8325 -0.0037 9 6 1.9120 7.6073 -1.0957 10 6 2.1332 8.9266 -0.6382 11 6 2.1271 8.8791 0.7060 12 8 1.9137 7.6084 1.0848 13 7 3.9656 2.4960 -0.0060 14 6 5.3498 2.9757 -0.0130 15 6 5.8317 3.1402 1.4054 16 1 5.1730 2.9101 2.2297 17 6 7.1140 3.5836 1.6508 18 7 7.5347 3.7267 2.8885 19 14 8.2538 3.9809 0.2250 20 1 8.0978 5.4093 -0.1501 21 1 9.6597 3.7260 0.6294 22 1 7.9098 3.1233 -0.9375 23 6 3.5476 1.1720 -0.0001 24 6 4.2089 -0.0688 -0.0007 25 8 5.4267 -0.1177 -0.0019 26 7 3.4812 -1.2048 -0.0001 27 6 4.1658 -2.5001 -0.0014 28 6 2.1376 -1.1663 0.0005 29 8 1.5143 -2.2104 0.0015 30 1 -0.3635 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5140 33 1 3.6480 5.1371 -0.0023 34 1 0.9687 5.0731 0.8884 35 1 0.9682 5.0717 -0.8916 36 1 1.8576 7.2836 -2.1247 37 1 2.2792 9.8042 -1.2505 38 1 2.2691 9.7202 1.3685 39 1 5.9819 2.2537 -0.5300 40 1 5.3992 3.9356 -0.5271 41 1 8.4367 4.0390 3.0612 42 1 3.4270 -3.3015 -0.0012 43 1 4.7890 -2.5809 -0.8919 44 1 4.7906 -2.5817 0.8880 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170624822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:01 Heat of formation + Delta-G solvation = 39.701772 kcal Electronic energy + Delta-G solvation = -32482.179030 eV Core-core repulsion = 28017.454269 eV Total energy + Delta-G solvation = -4464.724760 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.143 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.91856 -43.49194 -42.11292 -40.08842 -37.92512 -36.79419 -36.33036 -35.66653 -34.09040 -33.90776 -31.99440 -30.93252 -29.81671 -28.35033 -27.64880 -26.59089 -25.14239 -24.34349 -23.85416 -22.66475 -21.61098 -21.55756 -20.38368 -19.58133 -19.35399 -18.48301 -18.31307 -18.17840 -17.77882 -17.11136 -16.77114 -16.68739 -16.46012 -16.33107 -15.99249 -15.87515 -15.76599 -15.30018 -14.95652 -14.67417 -14.57462 -14.16727 -14.04018 -13.86877 -13.71330 -13.49875 -13.44182 -13.26920 -13.17409 -13.01878 -12.66623 -12.46906 -12.18788 -11.91098 -11.77730 -11.62572 -11.14757 -10.96129 -10.91986 -10.87591 -10.84733 -10.03465 -9.53081 -8.53850 -8.43657 -6.54156 0.00878 0.53910 0.71954 0.87625 1.26551 1.27527 1.34564 1.42197 1.70712 1.73886 1.87907 2.09954 2.22404 2.40502 2.46360 2.88874 3.13217 3.44741 3.66059 4.05122 4.11936 4.15927 4.19280 4.32917 4.40527 4.41574 4.42919 4.46167 4.49580 4.56764 4.59668 4.72239 4.82728 4.87901 4.91854 5.01767 5.03976 5.17690 5.18476 5.35144 5.53326 5.61162 5.82072 5.98431 6.11247 6.21524 6.32744 6.45021 6.49003 6.72986 6.92919 7.09456 8.72457 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.007804 B = 0.004194 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3586.871907 B = 6674.202771 C = 9691.949906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.505 5.505 3 C 0.344 3.656 4 N -0.534 5.534 5 C 0.554 3.446 6 N -0.692 5.692 7 C 0.232 3.768 8 C -0.058 4.058 9 C -0.178 4.178 10 C -0.230 4.230 11 C -0.032 4.032 12 O -0.194 6.194 13 N -0.430 5.430 14 C 0.225 3.775 15 C -0.543 4.543 16 H 0.027 0.973 17 C 0.027 3.973 18 N -0.932 5.932 19 Si 0.940 3.060 20 H -0.244 1.244 21 H -0.279 1.279 22 H -0.253 1.253 23 C -0.197 4.197 24 C 0.583 3.417 25 O -0.544 6.544 26 N -0.555 5.555 27 C 0.083 3.917 28 C 0.709 3.291 29 O -0.555 6.555 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.418 0.582 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.168 0.832 37 H 0.172 0.828 38 H 0.233 0.767 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.273 0.727 42 H 0.117 0.883 43 H 0.086 0.914 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.002 5.065 -10.547 19.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.233 5.233 3 C 0.110 3.890 4 N -0.269 5.269 5 C 0.199 3.801 6 N -0.336 5.336 7 C 0.110 3.890 8 C -0.108 4.108 9 C -0.198 4.198 10 C -0.248 4.248 11 C -0.099 4.099 12 O -0.091 6.091 13 N -0.119 5.119 14 C 0.104 3.896 15 C -0.581 4.581 16 H 0.046 0.954 17 C -0.173 4.173 18 N -0.571 5.571 19 Si 0.761 3.239 20 H -0.168 1.168 21 H -0.205 1.205 22 H -0.177 1.177 23 C -0.313 4.313 24 C 0.380 3.620 25 O -0.423 6.423 26 N -0.300 5.300 27 C -0.057 4.057 28 C 0.412 3.588 29 O -0.431 6.431 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.256 0.744 34 H 0.099 0.901 35 H 0.139 0.861 36 H 0.186 0.814 37 H 0.190 0.810 38 H 0.249 0.751 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.136 0.864 43 H 0.105 0.895 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.391 4.661 -10.139 19.011 hybrid contribution 2.275 0.289 0.124 2.297 sum -13.116 4.949 -10.015 17.228 Atomic orbital electron populations 1.22174 0.72387 1.05553 1.04965 1.43942 1.09808 0.99976 1.69535 1.17759 0.86361 0.87413 0.97489 1.69588 1.25483 0.97503 1.34300 1.19077 0.80598 0.86098 0.94302 1.43503 1.10680 0.97657 1.81755 1.19592 0.83361 0.80815 1.05191 1.22298 1.10154 0.93529 0.84833 1.22031 1.04367 0.93350 1.00027 1.22227 1.08499 0.99022 0.95091 1.24882 1.03030 0.84799 0.97229 1.84065 1.69769 1.19414 1.35805 1.44753 1.07834 1.02987 1.56297 1.19861 0.75770 0.96360 0.97563 1.21080 0.99513 1.46787 0.90681 0.95419 1.25707 0.98932 0.93977 0.98696 1.70013 1.19138 1.46406 1.21498 0.85842 0.78237 0.80447 0.79368 1.16769 1.20474 1.17670 1.18544 0.93680 0.86728 1.32325 1.15543 0.86599 0.83050 0.76829 1.90898 1.13768 1.87431 1.50171 1.45915 1.06125 1.10034 1.67891 1.22073 0.98415 0.80912 1.04329 1.15462 0.81324 0.83578 0.78481 1.90950 1.66019 1.29304 1.56832 0.89355 0.88487 0.88208 0.74421 0.90086 0.86096 0.81437 0.81017 0.75055 0.93474 0.91574 0.91807 0.86425 0.89511 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.86 10.39 127.77 1.33 3.19 16 2 N -0.51 -15.43 3.06 -678.17 -2.07 -17.50 16 3 C 0.34 12.28 7.63 132.90 1.01 13.29 16 4 N -0.53 -17.91 10.72 -194.26 -2.08 -19.99 16 5 C 0.55 19.88 8.45 260.62 2.20 22.08 16 6 N -0.69 -20.43 5.66 -353.29 -2.00 -22.43 16 7 C 0.23 5.18 6.48 85.63 0.55 5.73 16 8 C -0.06 -1.30 6.69 24.83 0.17 -1.13 16 9 C -0.18 -3.33 10.81 22.19 0.24 -3.09 16 10 C -0.23 -3.87 10.91 22.19 0.24 -3.63 16 11 C -0.03 -0.57 12.09 66.97 0.81 0.24 16 12 O -0.19 -4.75 10.65 -2.47 -0.03 -4.78 16 13 N -0.43 -18.42 2.82 -521.43 -1.47 -19.89 16 14 C 0.23 10.52 4.56 85.64 0.39 10.91 16 15 C -0.54 -30.76 9.94 25.60 0.25 -30.50 16 16 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 17 C 0.03 1.54 5.47 84.66 0.46 2.00 16 18 N -0.93 -56.92 13.96 21.45 0.30 -56.62 16 19 Si 0.94 41.72 27.47 68.60 1.88 43.61 16 20 H -0.24 -9.71 7.11 99.48 0.71 -9.00 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 23 C -0.20 -8.38 6.91 38.81 0.27 -8.12 16 24 C 0.58 25.01 7.42 84.80 0.63 25.64 16 25 O -0.54 -26.95 15.99 -4.91 -0.08 -27.03 16 26 N -0.56 -19.53 2.96 -807.44 -2.39 -21.92 16 27 C 0.08 2.29 9.99 127.77 1.28 3.56 16 28 C 0.71 23.26 8.12 179.21 1.45 24.71 16 29 O -0.56 -18.10 15.02 -4.03 -0.06 -18.16 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.10 1.88 7.38 -2.39 -0.02 1.86 16 32 H 0.10 1.89 8.00 -2.38 -0.02 1.88 16 33 H 0.42 12.79 7.65 -92.71 -0.71 12.08 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.12 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 37 H 0.17 1.98 8.06 -2.91 -0.02 1.95 16 38 H 0.23 2.33 8.06 -2.91 -0.02 2.31 16 39 H 0.05 2.37 6.34 -2.39 -0.02 2.35 16 40 H 0.07 2.69 6.90 -2.38 -0.02 2.67 16 41 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.12 2.78 6.80 -2.39 -0.02 2.77 16 43 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -77.80 379.23 3.61 -74.19 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.31 Total: 25.61 kcal Atomic # 6 Polarization: 53.61 SS G_CDS: 11.29 Total: 64.90 kcal Atomic # 7 Polarization: -148.63 SS G_CDS: -9.71 Total: -158.35 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -0.17 Total: -49.97 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.88 Total: 43.61 kcal Total: -77.80 3.61 -74.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170624822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.892 kcal (2) G-P(sol) polarization free energy of solvation -77.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds