Wall clock time and date at job start Tue Mar 31 2020 07:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47281 * 2 1 4 4 H 1.09001 * 109.46831 * 56.38660 * 3 2 1 5 5 C 1.50696 * 109.47399 * 176.38558 * 3 2 1 6 6 H 1.08004 * 120.00203 * 119.99690 * 5 3 2 7 7 C 1.37879 * 120.00478 * 300.00682 * 5 3 2 8 8 N 1.31515 * 119.99228 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00246 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47297 * 59.99638 * 9 7 5 11 11 H 1.48507 * 109.47172 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47231 * 299.99379 * 9 7 5 13 13 N 1.46502 * 109.47462 * 296.38831 * 3 2 1 14 14 S 1.65604 * 120.00249 * 120.69718 * 13 3 2 15 15 O 1.42099 * 106.40289 * 311.78545 * 14 13 3 16 16 O 1.42091 * 106.40113 * 178.86039 * 14 13 3 17 17 C 1.76202 * 107.21203 * 65.32125 * 14 13 3 18 18 C 1.38245 * 120.00339 * 244.08755 * 17 14 13 19 19 C 1.38217 * 120.00673 * 179.97438 * 18 17 14 20 20 C 1.38262 * 120.02284 * 0.25619 * 19 18 17 21 21 C 1.38199 * 120.00930 * 359.49123 * 20 19 18 22 22 C 1.50695 * 120.00510 * 180.25500 * 21 20 19 23 23 C 1.38304 * 120.00767 * 64.07252 * 17 14 13 24 24 Br 1.89103 * 120.00785 * 0.03832 * 23 17 14 25 25 H 1.08998 * 109.47209 * 304.94278 * 1 2 3 26 26 H 1.08997 * 109.47055 * 64.94223 * 1 2 3 27 27 H 1.08994 * 109.47231 * 184.94173 * 1 2 3 28 28 H 1.09004 * 109.47255 * 240.00127 * 2 1 3 29 29 H 1.09001 * 109.47270 * 119.99980 * 2 1 3 30 30 H 0.97003 * 119.99478 * 180.02562 * 8 7 5 31 31 H 0.96995 * 119.99819 * 300.70719 * 13 3 2 32 32 H 1.07992 * 119.99618 * 0.02562 * 18 17 14 33 33 H 1.08004 * 119.99053 * 179.97438 * 19 18 17 34 34 H 1.08002 * 120.00008 * 179.72368 * 20 19 18 35 35 H 1.09005 * 109.47295 * 270.25209 * 22 21 20 36 36 H 1.09002 * 109.47535 * 30.25805 * 22 21 20 37 37 H 1.09008 * 109.47204 * 150.25468 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6247 1.9746 0.8558 5 6 3.5443 1.4435 0.0896 6 1 4.1318 1.8943 -0.6966 7 6 4.1708 0.8686 1.1750 8 7 3.4553 0.3199 2.1324 9 14 6.0354 0.8692 1.2856 10 1 6.5309 2.2691 1.2853 11 1 6.4571 0.1957 2.5402 12 1 6.6007 0.1438 0.1197 13 7 1.6241 2.1076 -1.2373 14 16 0.6798 3.4664 -1.1699 15 8 -0.3852 3.1711 -0.2768 16 8 0.4752 3.8798 -2.5139 17 6 1.6380 4.7296 -0.4011 18 6 1.2428 5.2530 0.8159 19 6 1.9947 6.2434 1.4193 20 6 3.1393 6.7150 0.8036 21 6 3.5380 6.1887 -0.4104 22 6 4.7888 6.6986 -1.0786 23 6 2.7857 5.1974 -1.0149 24 35 3.3265 4.4823 -2.6799 25 1 -0.3633 0.5886 0.8424 26 1 -0.3633 0.4352 -0.9309 27 1 -0.3633 -1.0238 0.0885 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8960 -0.0842 2.8963 31 1 1.9016 1.7520 -2.0960 32 1 0.3470 4.8873 1.2955 33 1 1.6854 6.6524 2.3699 34 1 3.7241 7.4921 1.2733 35 1 4.5378 7.5380 -1.7273 36 1 5.4989 7.0259 -0.3192 37 1 5.2344 5.9008 -1.6729 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186431828.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:17 Heat of formation + Delta-G solvation = -51.481814 kcal Electronic energy + Delta-G solvation = -23342.482365 eV Core-core repulsion = 19871.965848 eV Total energy + Delta-G solvation = -3470.516517 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 361.013 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.29411 -36.71013 -35.85542 -35.27854 -33.11179 -32.25895 -32.13018 -30.49015 -29.38129 -26.91687 -26.60060 -23.07595 -22.98018 -21.60239 -20.08567 -18.86360 -17.46538 -16.94230 -16.45141 -15.81255 -15.75679 -15.09340 -14.48447 -14.15710 -14.06449 -13.67211 -13.21253 -13.07344 -12.91667 -12.41444 -12.36537 -12.09569 -11.74250 -11.65788 -11.51737 -11.45501 -11.29343 -11.21583 -10.96443 -10.82112 -10.67019 -10.55381 -10.29491 -9.93255 -9.77637 -9.68040 -9.47905 -9.10175 -8.54723 -8.47731 -8.18181 -6.10454 -4.18081 0.78693 1.08958 1.22861 1.65401 3.24948 3.30280 3.32348 3.41554 3.72480 4.27305 4.36074 4.63807 4.78504 5.05094 5.15549 5.19533 5.23998 5.47054 5.56642 5.68531 5.74406 6.02954 6.07432 6.20405 6.26671 6.34944 6.35898 6.41737 6.67318 6.80089 6.93424 7.12895 7.27032 7.63325 7.69703 7.90833 8.04575 8.28776 8.86329 9.48346 10.94082 Molecular weight = 361.01amu Principal moments of inertia in cm(-1) A = 0.009923 B = 0.006997 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.930472 B = 4000.543765 C = 4887.728371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C 0.281 3.719 4 H 0.046 0.954 5 C -0.526 4.526 6 H 0.066 0.934 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 N -1.090 6.090 14 S 2.682 3.318 15 O -0.960 6.960 16 O -0.966 6.966 17 C -0.635 4.635 18 C -0.020 4.020 19 C -0.124 4.124 20 C -0.069 4.069 21 C -0.081 4.081 22 C -0.124 4.124 23 C 0.010 3.990 24 Br -0.024 7.024 25 H 0.052 0.948 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.039 0.961 29 H 0.103 0.897 30 H 0.264 0.736 31 H 0.409 0.591 32 H 0.148 0.852 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.254 11.219 -4.558 12.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C 0.176 3.824 4 H 0.064 0.936 5 C -0.565 4.565 6 H 0.084 0.916 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.852 5.852 14 S 2.768 3.232 15 O -0.950 6.950 16 O -0.956 6.956 17 C -0.720 4.720 18 C -0.040 4.040 19 C -0.143 4.143 20 C -0.088 4.088 21 C -0.084 4.084 22 C -0.180 4.180 23 C -0.071 4.071 24 Br 0.063 6.937 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.121 0.879 30 H 0.074 0.926 31 H 0.243 0.757 32 H 0.166 0.834 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.411 11.032 -5.116 12.168 hybrid contribution 1.793 0.269 0.665 1.931 sum 1.382 11.302 -4.450 12.225 Atomic orbital electron populations 1.21826 0.98656 0.99275 1.00732 1.21883 0.92286 0.99394 1.02970 1.18585 0.94489 0.90021 0.79260 0.93613 1.21455 0.91079 1.37664 1.06324 0.91596 1.24882 0.98137 0.95031 0.95552 1.69854 1.35136 1.37831 1.09705 0.86666 0.85755 0.78272 0.77404 1.20309 1.21295 1.20135 1.55439 1.71788 1.41475 1.16471 1.02207 0.74172 0.73452 0.73405 1.93560 1.50913 1.83619 1.66940 1.93588 1.85330 1.82497 1.34222 1.31126 1.11279 1.21113 1.08512 1.20971 0.98672 0.93053 0.91260 1.21330 0.95367 0.97459 1.00190 1.21228 0.95907 0.98109 0.93560 1.19844 0.97015 0.95954 0.95596 1.20990 0.93984 1.02170 1.00892 1.21238 0.95528 0.97281 0.93057 1.96772 1.90735 1.83880 1.22331 0.92932 0.94646 0.94795 0.94207 0.87875 0.92638 0.75690 0.83410 0.84725 0.84873 0.90549 0.90898 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.66 37.16 0.36 -2.65 16 2 C -0.13 -2.82 5.44 -26.73 -0.15 -2.97 16 3 C 0.28 6.49 2.30 -69.08 -0.16 6.33 16 4 H 0.05 1.16 7.64 -51.93 -0.40 0.76 16 5 C -0.53 -13.10 8.84 -34.44 -0.30 -13.41 16 6 H 0.07 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -23.59 11.30 55.43 0.63 -22.97 16 9 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 N -1.09 -21.92 4.33 -5.88 -0.03 -21.94 16 14 S 2.68 52.67 4.88 -107.50 -0.52 52.15 16 15 O -0.96 -20.36 16.45 -57.17 -0.94 -21.30 16 16 O -0.97 -19.49 16.23 -57.17 -0.93 -20.42 16 17 C -0.63 -11.71 5.89 -39.55 -0.23 -11.94 16 18 C -0.02 -0.32 9.55 -39.59 -0.38 -0.70 16 19 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 20 C -0.07 -0.91 9.70 -39.59 -0.38 -1.29 16 21 C -0.08 -1.22 5.88 -104.60 -0.62 -1.83 16 22 C -0.12 -1.47 9.55 36.00 0.34 -1.13 16 23 C 0.01 0.18 6.21 -39.52 -0.25 -0.07 16 24 Br -0.02 -0.40 28.68 -68.01 -1.95 -2.35 16 25 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.03 0.68 7.85 -51.93 -0.41 0.27 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.10 2.57 5.98 -51.93 -0.31 2.26 16 30 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 31 H 0.41 7.52 8.96 -34.47 -0.31 7.21 16 32 H 0.15 2.28 7.34 -52.49 -0.39 1.89 16 33 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 34 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 37 H 0.08 1.01 6.65 -51.92 -0.35 0.66 16 LS Contribution 338.40 15.07 5.10 5.10 Total: -1.00 -29.45 338.40 -10.57 -40.03 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -4.66 Total: 6.60 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: -2.25 Total: -30.14 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.60 Total: -44.91 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -1.87 Total: -41.72 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 52.67 SS G_CDS: -0.52 Total: 52.15 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -1.95 Total: -2.35 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.45 -10.57 -40.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186431828.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.456 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds