Wall clock time and date at job start Tue Mar 31 2020 07:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47368 * 2 1 4 4 H 1.09002 * 109.47086 * 303.68644 * 3 2 1 5 5 C 1.50694 * 109.47551 * 183.67886 * 3 2 1 6 6 H 1.07993 * 120.00414 * 240.00355 * 5 3 2 7 7 C 1.37881 * 119.99723 * 60.00525 * 5 3 2 8 8 N 1.31518 * 120.00137 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00049 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47177 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47360 * 119.99504 * 9 7 5 12 12 H 1.48506 * 109.46976 * 239.99626 * 9 7 5 13 13 N 1.46503 * 109.46725 * 63.67904 * 3 2 1 14 14 S 1.65604 * 120.00072 * 244.11537 * 13 3 2 15 15 O 1.42102 * 106.39780 * 182.05919 * 14 13 3 16 16 O 1.42097 * 106.39962 * 49.14475 * 14 13 3 17 17 C 1.76197 * 107.21710 * 295.60065 * 14 13 3 18 18 C 1.38246 * 120.00190 * 115.71843 * 17 14 13 19 19 C 1.38220 * 120.00609 * 180.25132 * 18 17 14 20 20 C 1.38260 * 120.02136 * 359.48844 * 19 18 17 21 21 C 1.38198 * 120.00801 * 0.23855 * 20 19 18 22 22 C 1.50707 * 120.00171 * 179.97438 * 21 20 19 23 23 C 1.38302 * 120.00820 * 295.43836 * 17 14 13 24 24 Br 1.89096 * 120.00821 * 359.97438 * 23 17 14 25 25 H 1.08994 * 109.47028 * 296.61399 * 1 2 3 26 26 H 1.09005 * 109.46919 * 56.61058 * 1 2 3 27 27 H 1.08998 * 109.47277 * 176.60788 * 1 2 3 28 28 H 1.09003 * 109.47467 * 240.00464 * 2 1 3 29 29 H 1.08996 * 109.47607 * 120.00032 * 2 1 3 30 30 H 0.96995 * 119.99898 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00164 * 64.11861 * 13 3 2 32 32 H 1.07993 * 119.99404 * 0.02562 * 18 17 14 33 33 H 1.08004 * 119.98570 * 179.76708 * 19 18 17 34 34 H 1.07995 * 119.99368 * 180.24956 * 20 19 18 35 35 H 1.09002 * 109.46940 * 89.99875 * 22 21 20 36 36 H 1.09001 * 109.47042 * 209.99712 * 22 21 20 37 37 H 1.09005 * 109.47030 * 329.99999 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6238 1.9751 -0.8551 5 6 3.5442 1.4435 -0.0912 6 1 4.1326 1.8940 0.6945 7 6 4.1694 0.8693 -1.1777 8 7 3.4530 0.3202 -2.1342 9 14 6.0339 0.8699 -1.2904 10 1 6.6019 1.5441 -0.0954 11 1 6.5267 -0.5297 -1.3506 12 1 6.4555 1.5962 -2.5152 13 7 1.6254 2.1070 1.2381 14 16 0.5847 3.3938 1.1787 15 8 0.4197 3.8385 2.5182 16 8 -0.5007 2.9942 0.3532 17 6 1.4102 4.6930 0.3212 18 6 0.9196 5.1423 -0.8907 19 6 1.5700 6.1579 -1.5659 20 6 2.7054 6.7321 -1.0247 21 6 3.1932 6.2874 0.1894 22 6 4.4311 6.9130 0.7789 23 6 2.5456 5.2674 0.8631 24 35 3.2121 4.6591 2.5249 25 1 -0.3633 0.4603 0.9187 26 1 -0.3633 0.5656 -0.8581 27 1 -0.3634 -1.0258 -0.0608 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8928 -0.0840 -2.8984 31 1 1.9605 1.7933 2.0926 32 1 0.0302 4.6972 -1.3115 33 1 1.1886 6.5061 -2.5145 34 1 3.2109 7.5283 -1.5508 35 1 4.1473 7.7563 1.4086 36 1 4.9612 6.1735 1.3792 37 1 5.0799 7.2616 -0.0246 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186431846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:21 Heat of formation + Delta-G solvation = -51.191957 kcal Electronic energy + Delta-G solvation = -23332.625221 eV Core-core repulsion = 19862.121274 eV Total energy + Delta-G solvation = -3470.503948 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 361.013 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.30856 -36.71932 -35.84753 -35.27812 -33.12273 -32.26731 -32.13510 -30.46860 -29.38903 -26.92817 -26.60584 -23.09385 -22.97289 -21.61401 -20.07044 -18.86993 -17.47502 -16.97269 -16.42703 -15.80270 -15.76697 -15.09905 -14.48506 -14.16468 -14.07675 -13.67155 -13.22430 -13.07551 -12.91308 -12.42181 -12.37638 -12.10228 -11.73294 -11.68184 -11.52546 -11.43056 -11.30304 -11.23186 -10.92083 -10.84164 -10.66755 -10.55234 -10.26240 -9.95981 -9.77193 -9.65944 -9.42649 -9.11609 -8.55968 -8.49489 -8.18116 -6.11206 -4.18585 0.77347 1.08132 1.21410 1.64870 3.22271 3.31316 3.34469 3.40426 3.72008 4.26770 4.35847 4.62516 4.77424 5.04079 5.14643 5.19147 5.23181 5.46031 5.55891 5.67528 5.73139 6.01764 6.06564 6.19221 6.28214 6.33719 6.38975 6.41698 6.69608 6.78695 6.95046 7.15237 7.28608 7.64069 7.70361 7.89845 8.04327 8.29223 8.86451 9.47876 10.93503 Molecular weight = 361.01amu Principal moments of inertia in cm(-1) A = 0.009965 B = 0.006889 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.188586 B = 4063.475486 C = 4932.065342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.281 3.719 4 H 0.044 0.956 5 C -0.523 4.523 6 H 0.067 0.933 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.891 3.109 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.285 1.285 13 N -1.090 6.090 14 S 2.681 3.319 15 O -0.966 6.966 16 O -0.959 6.959 17 C -0.636 4.636 18 C -0.020 4.020 19 C -0.124 4.124 20 C -0.069 4.069 21 C -0.082 4.082 22 C -0.124 4.124 23 C 0.009 3.991 24 Br -0.023 7.023 25 H 0.035 0.965 26 H 0.052 0.948 27 H 0.032 0.968 28 H 0.103 0.897 29 H 0.039 0.961 30 H 0.262 0.738 31 H 0.410 0.590 32 H 0.148 0.852 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.442 11.589 4.045 12.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C 0.177 3.823 4 H 0.062 0.938 5 C -0.563 4.563 6 H 0.085 0.915 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.719 3.281 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.852 5.852 14 S 2.767 3.233 15 O -0.956 6.956 16 O -0.949 6.949 17 C -0.721 4.721 18 C -0.040 4.040 19 C -0.144 4.144 20 C -0.088 4.088 21 C -0.084 4.084 22 C -0.180 4.180 23 C -0.072 4.072 24 Br 0.064 6.936 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.121 0.879 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.244 0.756 32 H 0.166 0.834 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.059 11.392 4.653 12.351 hybrid contribution 1.714 0.287 -0.742 1.890 sum 0.655 11.679 3.912 12.334 Atomic orbital electron populations 1.21828 0.98518 0.99122 1.00920 1.21906 0.92384 0.99470 1.02934 1.18581 0.94681 0.89897 0.79165 0.93779 1.21495 0.90991 1.37486 1.06291 0.91481 1.24891 0.98190 0.95040 0.95564 1.69873 1.34963 1.37935 1.09742 0.86551 0.85734 0.77797 0.78052 1.19616 1.20943 1.21108 1.55444 1.67141 1.45767 1.16830 1.02246 0.74235 0.73449 0.73399 1.93591 1.85889 1.81856 1.34292 1.93565 1.49966 1.81251 1.70142 1.31132 1.09471 1.21395 1.10146 1.20981 0.98358 0.93694 0.90958 1.21336 0.95948 0.96897 1.00180 1.21231 0.95359 0.98304 0.93886 1.19851 0.97438 0.95886 0.95253 1.20994 0.94225 1.01345 1.01486 1.21253 0.95515 0.97210 0.93202 1.96780 1.86613 1.87758 1.22456 0.94552 0.92932 0.94897 0.87916 0.94225 0.92749 0.75645 0.83388 0.84709 0.84850 0.90544 0.90188 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.02 37.16 0.34 -2.68 16 2 C -0.13 -2.88 5.44 -26.73 -0.15 -3.02 16 3 C 0.28 6.50 2.27 -69.08 -0.16 6.34 16 4 H 0.04 1.11 7.75 -51.93 -0.40 0.71 16 5 C -0.52 -13.05 8.84 -34.44 -0.30 -13.36 16 6 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.07 1.69 5.30 -17.82 -0.09 1.59 16 8 N -0.89 -23.60 11.30 55.43 0.63 -22.97 16 9 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 13 N -1.09 -21.92 4.34 -5.88 -0.03 -21.94 16 14 S 2.68 52.41 4.86 -107.50 -0.52 51.89 16 15 O -0.97 -19.46 16.19 -57.17 -0.93 -20.38 16 16 O -0.96 -20.16 15.49 -57.17 -0.89 -21.04 16 17 C -0.64 -11.66 5.87 -39.55 -0.23 -11.89 16 18 C -0.02 -0.33 9.55 -39.58 -0.38 -0.71 16 19 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 20 C -0.07 -0.89 9.70 -39.59 -0.38 -1.28 16 21 C -0.08 -1.21 5.88 -104.60 -0.62 -1.82 16 22 C -0.12 -1.45 9.55 36.01 0.34 -1.11 16 23 C 0.01 0.16 6.21 -39.52 -0.25 -0.08 16 24 Br -0.02 -0.38 28.69 -68.01 -1.95 -2.33 16 25 H 0.04 0.71 7.42 -51.93 -0.39 0.33 16 26 H 0.05 1.12 8.13 -51.93 -0.42 0.70 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.10 2.57 5.98 -51.93 -0.31 2.26 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 31 H 0.41 7.55 8.96 -34.47 -0.31 7.24 16 32 H 0.15 2.26 7.34 -52.49 -0.39 1.87 16 33 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.00 6.65 -51.93 -0.35 0.65 16 37 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 LS Contribution 336.37 15.07 5.07 5.07 Total: -1.00 -29.50 336.37 -10.55 -40.05 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -4.64 Total: 6.53 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: -2.27 Total: -30.09 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.60 Total: -44.91 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -1.81 Total: -41.42 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 52.41 SS G_CDS: -0.52 Total: 51.89 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -1.95 Total: -2.33 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.50 -10.55 -40.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186431846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.140 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds