Wall clock time and date at job start Tue Mar 31 2020 06:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29431 * 124.80259 * 2 1 4 4 C 1.30943 * 117.36274 * 179.72830 * 3 2 1 5 5 C 1.35663 * 114.19163 * 0.02562 * 4 3 2 6 6 C 1.46678 * 126.12997 * 180.02562 * 5 4 3 7 7 O 1.21687 * 120.00071 * 269.77452 * 6 5 4 8 8 N 1.34781 * 119.99981 * 89.77690 * 6 5 4 9 9 C 1.46501 * 119.99855 * 185.82257 * 8 6 5 10 10 C 1.50701 * 109.46912 * 90.00234 * 9 8 6 11 11 H 1.07997 * 119.99839 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99811 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00149 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00022 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47085 * 59.99461 * 14 12 10 16 16 H 1.48499 * 109.47230 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46819 * 299.99581 * 14 12 10 18 18 C 1.46497 * 119.99610 * 5.82495 * 8 6 5 19 19 C 1.52993 * 109.47409 * 343.17967 * 18 8 6 20 20 C 1.53006 * 109.47489 * 180.02562 * 19 18 8 21 21 C 1.53003 * 109.46817 * 60.00012 * 20 19 18 22 22 C 1.53002 * 109.47251 * 300.00192 * 21 20 19 23 23 C 1.52993 * 109.47227 * 300.00128 * 22 21 20 24 24 C 1.53003 * 109.47110 * 59.99786 * 23 22 21 25 25 C 1.52991 * 109.47310 * 299.99852 * 24 23 22 26 26 C 1.52994 * 109.46991 * 60.00600 * 24 23 22 27 27 C 1.53003 * 109.46812 * 223.18031 * 18 8 6 28 28 S 1.70953 * 124.80277 * 179.69087 * 2 1 3 29 29 H 1.09000 * 109.46790 * 90.02612 * 1 2 3 30 30 H 1.08999 * 109.47251 * 210.02048 * 1 2 3 31 31 H 1.09001 * 109.47497 * 330.02484 * 1 2 3 32 32 H 1.07991 * 122.90464 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.46942 * 209.99862 * 9 8 6 34 34 H 1.08997 * 109.47475 * 329.99809 * 9 8 6 35 35 H 0.97001 * 119.99638 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.47749 * 300.00350 * 19 18 8 37 37 H 1.09010 * 109.47119 * 60.00269 * 19 18 8 38 38 H 1.08990 * 109.47360 * 180.02562 * 20 19 18 39 39 H 1.08995 * 109.46781 * 180.02562 * 21 20 19 40 40 H 1.08997 * 109.46885 * 59.99971 * 21 20 19 41 41 H 1.08998 * 109.47248 * 179.97438 * 22 21 20 42 42 H 1.09005 * 109.47106 * 300.00117 * 23 22 21 43 43 H 1.09003 * 109.47076 * 179.97438 * 23 22 21 44 44 H 1.09008 * 109.46829 * 179.97438 * 24 23 22 45 45 H 1.08998 * 109.47201 * 179.97438 * 25 24 23 46 46 H 1.09002 * 109.47596 * 300.00496 * 25 24 23 47 47 H 1.09005 * 109.47180 * 180.02562 * 26 24 23 48 48 H 1.08994 * 109.47904 * 59.99897 * 26 24 23 49 49 H 1.08999 * 109.47460 * 300.00002 * 27 18 8 50 50 H 1.08997 * 109.47164 * 60.00342 * 27 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0628 0.0000 4 6 3.5441 0.8932 0.0055 5 6 3.9352 -0.4058 0.0100 6 6 5.3188 -0.8925 0.0171 7 8 5.8960 -1.1005 -1.0338 8 7 5.9509 -1.1093 1.1876 9 6 7.3703 -1.4721 1.1973 10 6 8.2080 -0.2212 1.2659 11 1 7.7308 0.7471 1.2985 12 6 9.5835 -0.3130 1.2870 13 7 10.1645 -1.4922 1.2478 14 14 10.6219 1.2375 1.3727 15 1 10.2931 1.9855 2.6126 16 1 12.0606 0.8697 1.3837 17 1 10.3373 2.0897 0.1903 18 6 5.2186 -0.9822 2.4500 19 6 3.9206 -0.2084 2.2110 20 6 3.1560 -0.0751 3.5296 21 6 4.0184 0.6768 4.5454 22 6 5.3165 -0.0970 4.7844 23 6 4.9877 -1.4895 5.3262 24 6 4.1253 -2.2415 4.3104 25 6 2.8273 -1.4677 4.0715 26 6 4.8898 -2.3748 2.9919 27 6 6.0807 -0.2306 3.4662 28 16 2.4827 -1.4037 0.0076 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8898 0.5141 31 1 -0.3634 0.8902 0.5134 32 1 4.2433 1.7163 0.0056 33 1 7.5795 -2.0974 2.0652 34 1 7.6112 -2.0213 0.2872 35 1 11.1322 -1.5567 1.2630 36 1 4.1548 0.7838 1.8254 37 1 3.3064 -0.7439 1.4870 38 1 2.2311 0.4757 3.3592 39 1 3.4739 0.7714 5.4848 40 1 4.2527 1.6688 4.1593 41 1 5.9311 0.4389 5.5077 42 1 4.4430 -1.3946 6.2656 43 1 5.9125 -2.0410 5.4961 44 1 3.8915 -3.2338 4.6963 45 1 2.2131 -2.0032 3.3475 46 1 2.2826 -1.3727 5.0109 47 1 4.2753 -2.9101 2.2681 48 1 5.8145 -2.9261 3.1621 49 1 7.0055 -0.7819 3.6366 50 1 6.3150 0.7616 3.0807 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187052043.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:01 Heat of formation + Delta-G solvation = 46.674544 kcal Electronic energy + Delta-G solvation = -33294.588115 eV Core-core repulsion = 29414.573364 eV Total energy + Delta-G solvation = -3880.014751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.98628 -39.91536 -38.45010 -35.18734 -33.53804 -32.60888 -32.37827 -31.89498 -30.21179 -29.22491 -27.05891 -25.64975 -25.38575 -24.44498 -23.11843 -21.74972 -21.29107 -21.17464 -20.43119 -18.77982 -17.96028 -17.37229 -16.47138 -16.44417 -15.50392 -15.19424 -14.86750 -14.36507 -14.28503 -14.18469 -14.09141 -13.98341 -13.84316 -13.49305 -13.12906 -12.96034 -12.87667 -12.80212 -12.65122 -12.43189 -12.31216 -12.20457 -12.05644 -11.49667 -11.26029 -11.04795 -10.86390 -10.79147 -10.69158 -10.65125 -10.60434 -10.45169 -10.39657 -9.93662 -9.83322 -9.77047 -9.50651 -9.40716 -9.17384 -8.54642 -8.46016 -8.14243 -7.74429 -6.07529 -4.11801 0.55190 1.09822 1.62031 2.78449 3.26936 3.30001 3.34707 3.39147 3.78378 4.10728 4.41598 4.64054 4.67115 4.69740 4.93201 5.05149 5.20924 5.23526 5.26630 5.27836 5.29042 5.35026 5.37928 5.41863 5.49171 5.49537 5.55336 5.57226 5.66574 5.71540 5.82136 5.90394 5.95002 6.03132 6.12523 6.13734 6.16155 6.18290 6.25952 6.35633 6.42056 6.49944 6.50184 6.64179 6.78967 6.95532 7.00609 7.37945 7.44799 7.68722 7.87899 8.17628 8.27015 8.76675 8.94824 9.52625 11.00567 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.010653 B = 0.005042 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.753378 B = 5552.223781 C = 6916.850880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.034 3.966 3 N -0.463 5.463 4 C 0.066 3.934 5 C -0.219 4.219 6 C 0.577 3.423 7 O -0.523 6.523 8 N -0.571 5.571 9 C 0.247 3.753 10 C -0.523 4.523 11 H 0.058 0.942 12 C 0.064 3.936 13 N -0.893 5.893 14 Si 0.894 3.106 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.182 3.818 19 C -0.161 4.161 20 C -0.078 4.078 21 C -0.107 4.107 22 C -0.086 4.086 23 C -0.107 4.107 24 C -0.080 4.080 25 C -0.106 4.106 26 C -0.117 4.117 27 C -0.105 4.105 28 S 0.147 5.853 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.181 0.819 33 H 0.037 0.963 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.071 0.929 49 H 0.084 0.916 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.670 -0.149 6.919 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.241 4.241 3 N -0.177 5.177 4 C -0.085 4.085 5 C -0.342 4.342 6 C 0.360 3.640 7 O -0.400 6.400 8 N -0.301 5.301 9 C 0.129 3.871 10 C -0.561 4.561 11 H 0.076 0.924 12 C -0.138 4.138 13 N -0.532 5.532 14 Si 0.722 3.278 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C 0.097 3.903 19 C -0.202 4.202 20 C -0.097 4.097 21 C -0.145 4.145 22 C -0.105 4.105 23 C -0.145 4.145 24 C -0.099 4.099 25 C -0.144 4.144 26 C -0.156 4.156 27 C -0.143 4.143 28 S 0.402 5.598 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.198 0.802 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.090 0.910 49 H 0.103 0.897 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.636 -0.927 6.310 20.646 hybrid contribution 1.461 1.637 0.074 2.196 sum -18.175 0.710 6.384 19.277 Atomic orbital electron populations 1.20418 0.85144 1.04154 1.03807 1.27182 1.01751 0.91048 1.04162 1.66074 1.04561 1.31088 1.16023 1.21774 0.90933 0.94954 1.00836 1.25671 0.99441 0.97796 1.11328 1.16767 0.83001 0.79318 0.84953 1.90835 1.66443 1.51505 1.31211 1.48341 1.12856 1.65434 1.03445 1.19336 0.72612 0.96486 0.98692 1.21327 0.90951 0.92712 1.51143 0.92411 1.24889 0.97714 0.96128 0.95086 1.69917 1.10307 1.22813 1.50144 0.86613 0.79170 0.83346 0.78661 1.20199 1.21201 1.20202 1.20191 0.91018 0.94523 0.84581 1.24027 0.96833 1.01079 0.98233 1.21031 0.97899 0.95946 0.94818 1.21552 0.95986 0.98561 0.98358 1.21098 0.96099 0.95730 0.97539 1.21547 0.99595 0.95964 0.97373 1.21009 0.95024 0.98521 0.95341 1.21537 0.96779 0.95690 1.00351 1.21904 1.00535 0.96796 0.96324 1.21775 0.98270 1.01545 0.92692 1.84020 0.95842 1.11920 1.67980 0.89667 0.90176 0.89192 0.80237 0.94542 0.93697 0.92644 0.90508 0.89853 0.91699 0.92429 0.92153 0.91204 0.92373 0.91738 0.91319 0.92266 0.92223 0.92413 0.91016 0.89734 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.46 36.01 0.38 -0.19 16 2 C 0.03 0.41 7.18 -13.29 -0.10 0.32 16 3 N -0.46 -6.60 10.50 -11.50 -0.12 -6.72 16 4 C 0.07 1.05 7.98 -18.85 -0.15 0.90 16 5 C -0.22 -3.75 3.37 -37.10 -0.13 -3.88 16 6 C 0.58 12.43 7.47 -12.85 -0.10 12.34 16 7 O -0.52 -13.51 16.66 5.20 0.09 -13.42 16 8 N -0.57 -12.01 2.38 -161.70 -0.39 -12.39 16 9 C 0.25 6.24 4.46 -5.19 -0.02 6.22 16 10 C -0.52 -14.11 7.99 -34.44 -0.28 -14.38 16 11 H 0.06 1.56 7.41 -52.49 -0.39 1.17 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 13 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 14 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 18 C 0.18 3.07 0.78 -131.82 -0.10 2.97 16 19 C -0.16 -2.37 2.19 -26.73 -0.06 -2.43 16 20 C -0.08 -0.96 3.20 -90.61 -0.29 -1.25 16 21 C -0.11 -1.31 5.19 -26.73 -0.14 -1.45 16 22 C -0.09 -1.16 3.19 -90.65 -0.29 -1.45 16 23 C -0.11 -1.30 5.19 -26.73 -0.14 -1.44 16 24 C -0.08 -0.97 3.19 -90.63 -0.29 -1.26 16 25 C -0.11 -1.17 5.19 -26.73 -0.14 -1.31 16 26 C -0.12 -1.77 4.68 -26.73 -0.13 -1.90 16 27 C -0.10 -1.80 3.41 -26.75 -0.09 -1.89 16 28 S 0.15 1.94 21.06 -107.50 -2.26 -0.32 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.18 2.78 8.03 -52.49 -0.42 2.36 16 33 H 0.04 0.93 6.83 -51.93 -0.35 0.58 16 34 H 0.05 1.30 7.35 -51.93 -0.38 0.92 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.08 1.24 5.28 -51.93 -0.27 0.96 16 37 H 0.08 1.19 1.68 -56.99 -0.10 1.10 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.07 1.18 7.55 -51.93 -0.39 0.79 16 49 H 0.08 1.67 6.74 -51.93 -0.35 1.32 16 50 H 0.07 1.33 7.63 -51.93 -0.40 0.93 16 LS Contribution 378.01 15.07 5.70 5.70 Total: -1.00 -31.30 378.01 -11.11 -42.41 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.69 Total: 1.80 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -2.15 Total: -8.40 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.23 Total: -44.18 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.09 Total: -13.42 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.26 Total: -0.32 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.30 -11.11 -42.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187052043.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.085 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds