Wall clock time and date at job start Tue Mar 31 2020 06:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 120.00027 * 2 1 4 4 H 1.48496 * 109.47144 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46882 * 299.99955 * 3 2 1 6 6 H 1.48495 * 109.47270 * 60.00093 * 3 2 1 7 7 C 1.38800 * 119.99566 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99282 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00402 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99880 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47251 * 180.02562 * 10 9 7 12 12 O 1.21291 * 119.99688 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00132 * 179.97438 * 11 10 9 14 14 C 1.39929 * 119.99818 * 185.30824 * 13 11 10 15 15 C 1.39383 * 120.19082 * 18.55956 * 14 13 11 16 16 C 1.38097 * 119.97692 * 180.02562 * 15 14 13 17 17 C 1.38301 * 120.07873 * 0.07551 * 16 15 14 18 18 C 1.38199 * 120.18409 * 359.97438 * 17 16 15 19 19 C 1.38558 * 120.10982 * 0.02562 * 18 17 16 20 20 C 1.51173 * 108.31035 * 179.97438 * 19 18 17 21 21 N 1.48052 * 105.66595 * 342.52380 * 20 19 18 22 22 C 1.46900 * 111.00471 * 146.94081 * 21 20 19 23 23 C 1.53001 * 109.46661 * 61.03947 * 22 21 20 24 24 F 1.39898 * 109.47198 * 54.58758 * 23 22 21 25 25 F 1.39899 * 109.46900 * 174.58468 * 23 22 21 26 26 F 1.39898 * 109.47317 * 294.58496 * 23 22 21 27 27 C 1.48056 * 103.87471 * 27.58468 * 21 20 19 28 28 H 0.97001 * 119.99680 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47763 * 59.99517 * 10 9 7 30 30 H 1.09004 * 109.47017 * 299.99678 * 10 9 7 31 31 H 0.96992 * 120.00216 * 5.31312 * 13 11 10 32 32 H 1.08003 * 119.98600 * 0.07871 * 15 14 13 33 33 H 1.08002 * 119.95972 * 180.02562 * 16 15 14 34 34 H 1.08005 * 119.90462 * 179.97438 * 17 16 15 35 35 H 1.09001 * 110.20945 * 223.47412 * 20 19 18 36 36 H 1.08999 * 110.27526 * 101.60705 * 20 19 18 37 37 H 1.08994 * 109.47328 * 181.04276 * 22 21 20 38 38 H 1.08995 * 109.47062 * 301.04549 * 22 21 20 39 39 H 1.09007 * 110.20505 * 91.45756 * 27 21 20 40 40 H 1.08994 * 110.21085 * 213.27361 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0029 11 6 1.9874 -5.3028 0.0036 12 8 0.7910 -5.5024 0.0038 13 7 2.8441 -6.3431 0.0039 14 6 2.3574 -7.6503 -0.1077 15 6 1.0732 -7.8806 -0.5982 16 6 0.5971 -9.1724 -0.7059 17 6 1.3925 -10.2382 -0.3261 18 6 2.6661 -10.0155 0.1619 19 6 3.1516 -8.7225 0.2732 20 6 4.5551 -8.7886 0.8309 21 7 4.6854 -10.1376 1.4269 22 6 6.0592 -10.6410 1.2952 23 6 7.0179 -9.7062 2.0356 24 9 6.5947 -9.5584 3.3608 25 9 8.3070 -10.2493 2.0155 26 9 7.0286 -8.4563 1.4073 27 6 3.7399 -10.9647 0.6434 28 1 -0.4850 0.8401 0.0004 29 1 3.1245 -3.7306 0.8926 30 1 3.1244 -3.7322 -0.8872 31 1 3.7980 -6.1858 0.0815 32 1 0.4514 -7.0488 -0.8947 33 1 -0.3978 -9.3506 -1.0865 34 1 1.0172 -11.2474 -0.4112 35 1 4.6928 -8.0241 1.5957 36 1 5.2854 -8.6576 0.0324 37 1 6.1225 -11.6408 1.7246 38 1 6.3322 -10.6804 0.2408 39 1 4.2507 -11.4176 -0.2064 40 1 3.3031 -11.7380 1.2753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189542850.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:41 Heat of formation + Delta-G solvation = -136.613612 kcal Electronic energy + Delta-G solvation = -29055.496968 eV Core-core repulsion = 24354.011316 eV Total energy + Delta-G solvation = -4701.485652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.086 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.47948 -48.04881 -47.88242 -41.04887 -39.53593 -37.23814 -34.76532 -32.49195 -32.46971 -31.00477 -29.07408 -28.66075 -27.39094 -25.54078 -24.48941 -22.61965 -22.27658 -21.53699 -20.05208 -18.95327 -18.89420 -18.15122 -17.88290 -17.24768 -16.71024 -16.25815 -15.82041 -15.58721 -15.14077 -14.87474 -14.84499 -14.83314 -14.76577 -14.39532 -14.16232 -14.13761 -14.08415 -14.01785 -13.52263 -13.39258 -13.29316 -13.00762 -12.83749 -12.64673 -12.37140 -12.02270 -11.97543 -11.62999 -11.37778 -11.10513 -11.06765 -10.81013 -10.51590 -9.87640 -9.59694 -9.38073 -9.12362 -8.57588 -8.33282 -8.02870 -6.57783 -6.27311 -3.98840 1.15787 1.22610 2.23248 2.81098 2.82800 2.98509 3.18868 3.23951 3.28696 3.31086 3.53717 3.56475 3.67622 3.91894 4.10933 4.14401 4.16033 4.47738 4.63339 4.79788 4.83266 4.88667 4.97216 5.08472 5.14766 5.17235 5.35634 5.46531 5.51830 5.62391 5.74282 5.82498 5.84557 6.00831 6.05904 6.20232 6.29739 6.44095 6.51097 6.99163 7.42025 7.55160 8.28419 8.30301 9.18495 10.80178 Molecular weight = 360.09amu Principal moments of inertia in cm(-1) A = 0.011575 B = 0.002355 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.451936 B =11889.135223 C =14044.609320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.056 6.056 10 C -0.156 4.156 11 C 0.533 3.467 12 O -0.491 6.491 13 N -0.675 5.675 14 C 0.190 3.810 15 C -0.138 4.138 16 C -0.091 4.091 17 C -0.125 4.125 18 C -0.086 4.086 19 C -0.151 4.151 20 C 0.072 3.928 21 N -0.495 5.495 22 C -0.002 4.002 23 C 0.457 3.543 24 F -0.170 7.170 25 F -0.182 7.182 26 F -0.182 7.182 27 C 0.084 3.916 28 H 0.269 0.731 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.410 0.590 32 H 0.165 0.835 33 H 0.130 0.870 34 H 0.121 0.879 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.127 0.873 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.897 -26.091 -0.063 29.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.171 5.829 10 C -0.306 4.306 11 C 0.321 3.679 12 O -0.364 6.364 13 N -0.318 5.318 14 C 0.093 3.907 15 C -0.158 4.158 16 C -0.110 4.110 17 C -0.144 4.144 18 C -0.087 4.087 19 C -0.154 4.154 20 C -0.056 4.056 21 N -0.219 5.219 22 C -0.132 4.132 23 C 0.402 3.598 24 F -0.151 7.151 25 F -0.164 7.164 26 F -0.164 7.164 27 C -0.042 4.042 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.245 0.755 32 H 0.182 0.818 33 H 0.148 0.852 34 H 0.139 0.861 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.145 0.855 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.681 -26.191 0.535 28.291 hybrid contribution 2.889 1.506 -0.619 3.316 sum 13.570 -24.685 -0.084 28.169 Atomic orbital electron populations 1.70022 1.05962 1.27469 1.46757 1.25002 0.95050 0.99099 0.94421 0.86094 0.79586 0.81755 0.77944 1.19578 1.20534 1.20514 1.22892 0.94967 0.91456 1.59121 0.90758 1.85399 1.04353 0.96393 1.96761 1.23570 1.07102 0.94482 1.05445 1.20571 0.86399 0.86323 0.74624 1.90606 1.15350 1.84882 1.45530 1.43710 1.11136 1.04100 1.72887 1.17422 0.93678 0.82627 0.96966 1.21962 0.95031 0.99004 0.99781 1.21050 0.99592 0.91749 0.98573 1.20356 0.92668 0.99318 1.02103 1.20127 0.94943 0.93641 1.00016 1.19999 0.96811 0.93318 1.05297 1.21811 0.93462 0.91882 0.98397 1.65305 1.02841 1.02925 1.50804 1.23539 0.89250 0.99226 1.01213 1.20336 0.80346 0.80390 0.78713 1.93237 1.89622 1.95876 1.36379 1.93201 1.41053 1.85678 1.96460 1.93199 1.96431 1.44674 1.82069 1.21567 0.91279 0.95243 0.96134 0.92154 0.88718 0.88653 0.75484 0.81827 0.85200 0.86060 0.88652 0.91268 0.85520 0.89565 0.91474 0.88249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.72 13.22 55.49 0.73 -24.99 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.12 29.55 -169.99 -5.02 16.10 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.54 -14.93 9.50 30.94 0.29 -14.64 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 10 C -0.16 -2.99 6.16 36.01 0.22 -2.76 16 11 C 0.53 9.50 7.71 -10.99 -0.08 9.41 16 12 O -0.49 -10.32 12.71 5.55 0.07 -10.25 16 13 N -0.67 -9.28 5.38 -9.76 -0.05 -9.33 16 14 C 0.19 2.60 6.53 -83.54 -0.55 2.05 16 15 C -0.14 -1.98 8.82 -39.21 -0.35 -2.33 16 16 C -0.09 -1.05 10.04 -39.61 -0.40 -1.44 16 17 C -0.12 -1.24 10.04 -39.57 -0.40 -1.63 16 18 C -0.09 -0.87 6.27 -104.28 -0.65 -1.52 16 19 C -0.15 -1.73 6.19 -104.08 -0.64 -2.37 16 20 C 0.07 0.67 4.65 -4.11 -0.02 0.65 16 21 N -0.50 -4.01 5.37 -234.91 -1.26 -5.27 16 22 C 0.00 -0.01 4.86 -3.82 -0.02 -0.03 16 23 C 0.46 3.52 3.14 37.16 0.12 3.64 16 24 F -0.17 -1.66 17.14 2.25 0.04 -1.62 16 25 F -0.18 -1.42 17.32 2.25 0.04 -1.38 16 26 F -0.18 -1.61 14.43 2.25 0.03 -1.57 16 27 C 0.08 0.60 6.61 -4.10 -0.03 0.57 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 30 H 0.10 1.67 8.14 -51.91 -0.42 1.25 16 31 H 0.41 4.38 8.52 -40.82 -0.35 4.03 16 32 H 0.16 2.74 5.36 -52.49 -0.28 2.46 16 33 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.10 0.97 7.77 -51.93 -0.40 0.57 16 36 H 0.07 0.56 6.90 -51.93 -0.36 0.20 16 37 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.33 7.91 -51.93 -0.41 -0.08 16 39 H 0.07 0.35 7.71 -51.92 -0.40 -0.05 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -33.70 361.99 -9.06 -42.76 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -4.28 Total: 2.19 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -2.60 Total: -8.42 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: -0.58 Total: -39.59 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.11 Total: -4.57 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.70 -9.06 -42.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189542850.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.858 kcal (2) G-P(sol) polarization free energy of solvation -33.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds