Wall clock time and date at job start Tue Mar 31 2020 06:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 120.00027 * 2 1 4 4 H 1.48496 * 109.47144 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46882 * 299.99955 * 3 2 1 6 6 H 1.48495 * 109.47270 * 60.00093 * 3 2 1 7 7 C 1.38800 * 119.99566 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99282 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00402 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99880 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47251 * 180.02562 * 10 9 7 12 12 O 1.21291 * 119.99688 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00132 * 179.97438 * 11 10 9 14 14 C 1.39929 * 119.99818 * 185.30824 * 13 11 10 15 15 C 1.39383 * 120.19082 * 18.55956 * 14 13 11 16 16 C 1.38097 * 119.97692 * 180.02562 * 15 14 13 17 17 C 1.38301 * 120.07873 * 0.07551 * 16 15 14 18 18 C 1.38199 * 120.18409 * 359.97438 * 17 16 15 19 19 C 1.38558 * 120.10982 * 0.02562 * 18 17 16 20 20 C 1.51173 * 108.31035 * 179.97438 * 19 18 17 21 21 N 1.48052 * 105.66595 * 342.52380 * 20 19 18 22 22 C 1.46900 * 111.00471 * 146.94081 * 21 20 19 23 23 C 1.53001 * 109.46661 * 61.03947 * 22 21 20 24 24 F 1.39898 * 109.47198 * 54.58758 * 23 22 21 25 25 F 1.39899 * 109.46900 * 174.58468 * 23 22 21 26 26 F 1.39898 * 109.47317 * 294.58496 * 23 22 21 27 27 C 1.48056 * 103.87471 * 27.58468 * 21 20 19 28 28 H 0.97001 * 119.99680 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47763 * 59.99517 * 10 9 7 30 30 H 1.09004 * 109.47017 * 299.99678 * 10 9 7 31 31 H 0.96992 * 120.00216 * 5.31312 * 13 11 10 32 32 H 1.08003 * 119.98600 * 0.07871 * 15 14 13 33 33 H 1.08002 * 119.95972 * 180.02562 * 16 15 14 34 34 H 1.08005 * 119.90462 * 179.97438 * 17 16 15 35 35 H 1.09001 * 110.20945 * 223.47412 * 20 19 18 36 36 H 1.08999 * 110.27526 * 101.60705 * 20 19 18 37 37 H 1.08994 * 109.47328 * 181.04276 * 22 21 20 38 38 H 1.08995 * 109.47062 * 301.04549 * 22 21 20 39 39 H 1.09007 * 110.20505 * 91.45756 * 27 21 20 40 40 H 1.08994 * 110.21085 * 213.27361 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0029 11 6 1.9874 -5.3028 0.0036 12 8 0.7910 -5.5024 0.0038 13 7 2.8441 -6.3431 0.0039 14 6 2.3574 -7.6503 -0.1077 15 6 1.0732 -7.8806 -0.5982 16 6 0.5971 -9.1724 -0.7059 17 6 1.3925 -10.2382 -0.3261 18 6 2.6661 -10.0155 0.1619 19 6 3.1516 -8.7225 0.2732 20 6 4.5551 -8.7886 0.8309 21 7 4.6854 -10.1376 1.4269 22 6 6.0592 -10.6410 1.2952 23 6 7.0179 -9.7062 2.0356 24 9 6.5947 -9.5584 3.3608 25 9 8.3070 -10.2493 2.0155 26 9 7.0286 -8.4563 1.4073 27 6 3.7399 -10.9647 0.6434 28 1 -0.4850 0.8401 0.0004 29 1 3.1245 -3.7306 0.8926 30 1 3.1244 -3.7322 -0.8872 31 1 3.7980 -6.1858 0.0815 32 1 0.4514 -7.0488 -0.8947 33 1 -0.3978 -9.3506 -1.0865 34 1 1.0172 -11.2474 -0.4112 35 1 4.6928 -8.0241 1.5957 36 1 5.2854 -8.6576 0.0324 37 1 6.1225 -11.6408 1.7246 38 1 6.3322 -10.6804 0.2408 39 1 4.2507 -11.4176 -0.2064 40 1 3.3031 -11.7380 1.2753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189542850.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:40 Heat of formation + Delta-G solvation = -159.538689 kcal Electronic energy + Delta-G solvation = -29056.491074 eV Core-core repulsion = 24354.011316 eV Total energy + Delta-G solvation = -4702.479758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.086 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.08270 -48.64606 -48.52515 -42.00056 -40.63434 -38.08042 -35.94674 -34.60567 -33.15626 -32.17896 -30.21808 -29.33380 -28.28609 -27.65404 -25.19552 -23.46450 -23.08130 -22.38894 -21.21872 -19.94061 -19.55098 -19.45841 -18.69390 -18.34620 -17.89294 -16.99829 -16.91155 -16.88970 -16.43580 -16.21307 -16.05627 -15.50388 -15.47826 -15.40250 -15.04725 -14.98309 -14.80808 -14.74782 -14.66047 -14.57358 -14.14071 -14.03132 -13.94608 -13.65872 -13.25549 -13.17107 -12.99673 -12.92732 -12.67525 -12.59981 -12.39086 -12.18438 -11.74745 -11.61919 -11.17654 -10.75499 -10.32580 -10.22546 -9.32662 -9.04773 -8.69194 -8.37229 -6.15334 0.22178 0.31407 1.20054 1.40443 1.43052 1.49109 1.55712 1.71708 2.07399 2.24258 2.43752 2.74308 2.79466 2.97519 3.05775 3.23743 3.30694 3.38886 3.49933 3.70736 4.05409 4.15413 4.21089 4.23415 4.30050 4.31975 4.39133 4.43082 4.48028 4.59560 4.69028 4.75013 4.97639 5.16895 5.24787 5.38851 5.40716 5.53369 5.58823 5.61024 6.02674 6.18026 6.29687 6.98417 7.04692 8.72194 Molecular weight = 360.09amu Principal moments of inertia in cm(-1) A = 0.011575 B = 0.002355 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.451936 B =11889.135223 C =14044.609320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.142 6.142 10 C -0.131 4.131 11 C 0.535 3.465 12 O -0.531 6.531 13 N -0.655 5.655 14 C 0.162 3.838 15 C -0.168 4.168 16 C -0.097 4.097 17 C -0.116 4.116 18 C -0.086 4.086 19 C -0.154 4.154 20 C 0.075 3.925 21 N -0.510 5.510 22 C 0.003 3.997 23 C 0.451 3.549 24 F -0.186 7.186 25 F -0.184 7.184 26 F -0.192 7.192 27 C 0.089 3.911 28 H 0.272 0.728 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.424 0.576 32 H 0.131 0.869 33 H 0.145 0.855 34 H 0.156 0.844 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.154 0.846 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.555 -28.567 -0.172 32.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.085 5.915 10 C -0.282 4.282 11 C 0.322 3.678 12 O -0.407 6.407 13 N -0.300 5.300 14 C 0.066 3.934 15 C -0.188 4.188 16 C -0.115 4.115 17 C -0.135 4.135 18 C -0.087 4.087 19 C -0.157 4.157 20 C -0.053 4.053 21 N -0.234 5.234 22 C -0.126 4.126 23 C 0.397 3.603 24 F -0.167 7.167 25 F -0.165 7.165 26 F -0.173 7.173 27 C -0.037 4.037 28 H 0.081 0.919 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.262 0.738 32 H 0.148 0.852 33 H 0.163 0.837 34 H 0.174 0.826 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.171 0.829 38 H 0.129 0.871 39 H 0.115 0.885 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.383 -28.714 0.425 31.683 hybrid contribution 2.118 2.057 -0.576 3.008 sum 15.501 -26.658 -0.151 30.837 Atomic orbital electron populations 1.70182 1.07937 1.28607 1.47985 1.26120 0.95973 1.03306 0.93712 0.84902 0.78612 0.76344 0.78079 1.18051 1.19900 1.19974 1.23233 0.95395 0.91906 1.58874 0.89834 1.85551 1.09807 0.99042 1.97067 1.23384 1.04097 0.93442 1.07280 1.20285 0.86180 0.86592 0.74713 1.90618 1.17023 1.85331 1.47717 1.43340 1.11284 1.03616 1.71719 1.17560 0.94213 0.82673 0.98941 1.21813 0.95580 0.99450 1.01971 1.21274 1.00643 0.91117 0.98488 1.20717 0.92291 1.00265 1.00204 1.20648 0.95560 0.93864 0.98640 1.20251 0.97732 0.93204 1.04507 1.21782 0.92338 0.92797 0.98342 1.65284 1.04520 1.02343 1.51267 1.23676 0.87098 0.99355 1.02463 1.20769 0.80811 0.80502 0.78244 1.93205 1.89786 1.95989 1.37753 1.93197 1.41327 1.85588 1.96423 1.93179 1.96488 1.45576 1.82104 1.21696 0.90214 0.94474 0.97365 0.91946 0.86835 0.86629 0.73760 0.85153 0.83742 0.82590 0.90020 0.89847 0.82859 0.87130 0.88492 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.60 13.22 21.65 0.29 -55.32 16 2 C 0.01 0.78 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.44 29.55 68.60 2.03 45.47 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 5 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.55 -30.89 9.50 67.95 0.65 -30.24 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.14 -7.75 20.57 -56.49 -1.16 -8.91 16 10 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 11 C 0.53 19.77 7.71 87.66 0.68 20.44 16 12 O -0.53 -23.84 12.71 -3.06 -0.04 -23.88 16 13 N -0.66 -18.23 5.38 -303.19 -1.63 -19.86 16 14 C 0.16 4.46 6.53 38.25 0.25 4.71 16 15 C -0.17 -5.04 8.82 22.51 0.20 -4.84 16 16 C -0.10 -2.17 10.04 22.25 0.22 -1.95 16 17 C -0.12 -1.97 10.04 22.28 0.22 -1.74 16 18 C -0.09 -1.47 6.27 -19.64 -0.12 -1.59 16 19 C -0.15 -3.27 6.19 -19.51 -0.12 -3.40 16 20 C 0.07 1.23 4.65 85.49 0.40 1.63 16 21 N -0.51 -6.46 5.37 -897.13 -4.82 -11.28 16 22 C 0.00 0.02 4.86 86.30 0.42 0.44 16 23 C 0.45 5.92 3.14 71.98 0.23 6.14 16 24 F -0.19 -3.35 17.14 44.97 0.77 -2.58 16 25 F -0.18 -2.46 17.32 44.97 0.78 -1.68 16 26 F -0.19 -3.05 14.43 44.97 0.65 -2.40 16 27 C 0.09 0.85 6.61 85.49 0.56 1.41 16 28 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 29 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 30 H 0.12 4.01 8.14 -2.39 -0.02 3.99 16 31 H 0.42 8.84 8.52 -92.71 -0.79 8.05 16 32 H 0.13 4.80 5.36 -2.92 -0.02 4.78 16 33 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 34 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 35 H 0.08 1.57 7.77 -2.39 -0.02 1.55 16 36 H 0.08 1.12 6.90 -2.39 -0.02 1.11 16 37 H 0.15 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.11 0.30 7.91 -2.39 -0.02 0.28 16 39 H 0.10 0.42 7.71 -2.38 -0.02 0.40 16 40 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -77.68 361.99 1.67 -76.01 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.32 Total: 16.82 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 4.49 Total: -12.40 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -6.17 Total: -86.46 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.04 Total: -23.88 kcal Atomic # 9 Polarization: -8.86 SS G_CDS: 2.20 Total: -6.66 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -7.75 SS G_CDS: -1.16 Total: -8.91 kcal Total: -77.68 1.67 -76.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189542850.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.527 kcal (2) G-P(sol) polarization free energy of solvation -77.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds