Wall clock time and date at job start Tue Mar 31 2020 07:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38240 * 119.99366 * 2 1 4 4 C 1.38301 * 119.99039 * 179.97438 * 3 2 1 5 5 Br 1.89107 * 120.00809 * 180.02562 * 4 3 2 6 6 C 1.38343 * 119.98103 * 0.02562 * 4 3 2 7 7 C 1.38201 * 119.98908 * 0.02562 * 6 4 3 8 8 S 1.76201 * 119.99166 * 180.02562 * 7 6 4 9 9 O 1.42098 * 106.40336 * 336.45395 * 8 7 6 10 10 O 1.42103 * 106.39750 * 203.53794 * 8 7 6 11 11 N 1.65597 * 107.21937 * 89.99875 * 8 7 6 12 12 C 1.46502 * 119.99819 * 269.99416 * 11 8 7 13 13 C 1.46502 * 120.00090 * 89.99486 * 11 8 7 14 14 H 1.09001 * 109.46784 * 0.02562 * 13 11 8 15 15 C 1.52992 * 109.47408 * 239.99906 * 13 11 8 16 16 C 1.50702 * 109.46730 * 120.00013 * 13 11 8 17 17 H 1.07997 * 120.00336 * 35.00002 * 16 13 11 18 18 C 1.37885 * 119.99478 * 214.72838 * 16 13 11 19 19 N 1.31518 * 119.99327 * 184.99664 * 18 16 13 20 20 Si 1.86790 * 120.00191 * 4.99839 * 18 16 13 21 21 H 1.48493 * 109.47326 * 85.04098 * 20 18 16 22 22 H 1.48502 * 109.47091 * 205.04078 * 20 18 16 23 23 H 1.48506 * 109.47410 * 325.03653 * 20 18 16 24 24 C 1.38222 * 119.99717 * 180.27111 * 2 1 3 25 25 H 1.09000 * 109.46683 * 90.00339 * 1 2 3 26 26 H 1.08999 * 109.46580 * 209.99751 * 1 2 3 27 27 H 1.08994 * 109.47459 * 329.99906 * 1 2 3 28 28 H 1.08006 * 120.00676 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.00911 * 180.02562 * 6 4 3 30 30 H 1.09001 * 109.47017 * 270.00010 * 12 11 8 31 31 H 1.09001 * 109.46985 * 30.00669 * 12 11 8 32 32 H 1.09004 * 109.46719 * 149.99995 * 12 11 8 33 33 H 1.09005 * 109.47269 * 294.04381 * 15 13 11 34 34 H 1.09005 * 109.46773 * 54.03971 * 15 13 11 35 35 H 1.08998 * 109.47452 * 174.04282 * 15 13 11 36 36 H 0.96998 * 119.99498 * 179.97438 * 19 18 16 37 37 H 1.07996 * 119.99189 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5811 1.1972 0.0005 5 35 4.5269 2.8347 0.0013 6 6 4.2723 -0.0012 0.0005 7 6 3.5806 -1.1976 -0.0005 8 16 4.4610 -2.7239 0.0001 9 8 5.7446 -2.4471 -0.5429 10 8 3.5794 -3.6958 -0.5455 11 7 4.7041 -3.1489 1.5821 12 6 5.9107 -2.7031 2.2832 13 6 3.7125 -3.9707 2.2805 14 1 2.8911 -4.2032 1.6028 15 6 3.1750 -3.2034 3.4900 16 6 4.3582 -5.2510 2.7443 17 1 5.3878 -5.2493 3.0703 18 6 3.6327 -6.4235 2.7576 19 7 4.1637 -7.5196 3.2537 20 14 1.8959 -6.4549 2.0710 21 1 1.9478 -6.6716 0.6029 22 1 1.1319 -7.5580 2.7074 23 1 1.2269 -5.1603 2.3570 24 6 2.1981 -1.1971 -0.0057 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6580 2.1326 -0.0004 29 1 5.3524 -0.0018 0.0014 30 1 6.7007 -3.4429 2.1532 31 1 6.2369 -1.7473 1.8732 32 1 5.6923 -2.5875 3.3448 33 1 3.9754 -3.0637 4.2168 34 1 2.8033 -2.2308 3.1674 35 1 2.3634 -3.7690 3.9477 36 1 3.6533 -8.3443 3.2634 37 1 1.6579 -2.1322 -0.0105 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195571806.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:39 Heat of formation + Delta-G solvation = -45.479939 kcal Electronic energy + Delta-G solvation = -22883.463335 eV Core-core repulsion = 19413.207079 eV Total energy + Delta-G solvation = -3470.256256 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 361.013 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.61736 -36.86228 -36.39137 -35.37393 -33.47266 -32.53054 -32.37726 -30.00772 -29.67080 -27.32552 -25.82404 -25.18768 -23.39411 -21.79460 -20.65699 -18.39202 -17.49946 -17.46722 -16.57367 -16.20691 -16.03506 -15.26525 -14.42794 -14.37500 -14.23829 -13.68586 -13.51345 -13.30025 -12.85940 -12.68777 -12.63665 -12.55344 -12.31434 -12.04136 -11.88810 -11.67065 -11.52807 -11.42573 -11.25234 -11.11157 -10.96123 -10.80551 -10.66741 -10.44955 -10.38636 -9.84642 -9.43620 -9.39355 -8.91543 -8.64994 -8.13806 -6.21616 -4.21552 0.48778 0.83106 0.87748 1.31932 3.02488 3.25416 3.31582 3.40535 3.57593 4.17928 4.32037 4.33239 4.63477 4.69153 4.83451 4.97739 5.06097 5.11096 5.33422 5.34989 5.48457 5.49220 5.68526 5.79288 5.85886 5.98231 6.06741 6.15349 6.29155 6.33940 6.44685 6.47951 6.53423 6.85180 7.13324 7.39699 7.57735 8.38230 8.84026 9.39198 10.90103 Molecular weight = 361.01amu Principal moments of inertia in cm(-1) A = 0.017243 B = 0.003755 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.420412 B = 7455.080059 C = 8123.872700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.101 4.101 3 C -0.047 4.047 4 C -0.110 4.110 5 Br -0.047 7.047 6 C 0.000 4.000 7 C -0.661 4.661 8 S 2.670 3.330 9 O -0.966 6.966 10 O -0.951 6.951 11 N -0.971 5.971 12 C 0.105 3.895 13 C 0.232 3.768 14 H 0.058 0.942 15 C -0.149 4.149 16 C -0.513 4.513 17 H 0.084 0.916 18 C 0.079 3.921 19 N -0.885 5.885 20 Si 0.864 3.136 21 H -0.263 1.263 22 H -0.285 1.285 23 H -0.263 1.263 24 C -0.005 4.005 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.137 0.863 29 H 0.148 0.852 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.026 0.974 35 H 0.056 0.944 36 H 0.268 0.732 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.608 21.184 -4.870 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.102 4.102 3 C -0.067 4.067 4 C -0.190 4.190 5 Br 0.039 6.961 6 C -0.021 4.021 7 C -0.745 4.745 8 S 2.759 3.241 9 O -0.956 6.956 10 O -0.941 6.941 11 N -0.812 5.812 12 C -0.041 4.041 13 C 0.129 3.871 14 H 0.076 0.924 15 C -0.209 4.209 16 C -0.554 4.554 17 H 0.102 0.898 18 C -0.126 4.126 19 N -0.522 5.522 20 Si 0.690 3.310 21 H -0.187 1.187 22 H -0.211 1.211 23 H -0.188 1.188 24 C -0.025 4.025 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.155 0.845 29 H 0.165 0.835 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.021 21.204 -5.584 22.292 hybrid contribution -1.417 0.168 0.005 1.427 sum -5.439 21.372 -5.579 22.748 Atomic orbital electron populations 1.20835 0.89785 1.03608 1.02972 1.20056 0.96888 0.92409 1.00896 1.21215 0.91993 0.98690 0.94774 1.21836 0.94933 0.91991 1.10200 1.96721 1.75293 1.26294 1.97828 1.20858 1.00500 0.89549 0.91156 1.31723 1.06648 1.21260 1.14874 1.02959 0.73675 0.73346 0.74146 1.93524 1.38790 1.85714 1.77537 1.93571 1.67133 1.56514 1.76861 1.57778 1.29889 1.63120 1.30373 1.21255 0.86601 0.97937 0.98281 1.19207 0.87375 0.89899 0.90617 0.92443 1.22265 1.00714 0.97830 1.00096 1.21129 1.00858 0.90295 1.43088 0.89835 1.25001 0.98130 0.95290 0.94173 1.69882 1.37877 1.00510 1.43901 0.87043 0.84845 0.78129 0.80942 1.18743 1.21139 1.18786 1.21036 0.92148 0.99116 0.90184 0.90580 0.90594 0.91070 0.84494 0.83451 0.92281 0.92942 0.90840 0.92546 0.95532 0.92519 0.92223 0.83606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.10 -1.17 5.88 -104.63 -0.62 -1.78 16 3 C -0.05 -0.51 9.44 -39.56 -0.37 -0.89 16 4 C -0.11 -1.35 6.22 -39.52 -0.25 -1.59 16 5 Br -0.05 -0.49 33.70 -68.01 -2.29 -2.78 16 6 C 0.00 0.00 9.26 -39.56 -0.37 -0.36 16 7 C -0.66 -10.29 5.97 -39.59 -0.24 -10.53 16 8 S 2.67 51.03 5.64 -107.50 -0.61 50.42 16 9 O -0.97 -19.39 16.35 -57.17 -0.94 -20.32 16 10 O -0.95 -20.96 15.84 -57.17 -0.91 -21.87 16 11 N -0.97 -19.09 3.06 -115.85 -0.35 -19.44 16 12 C 0.11 1.77 9.39 59.85 0.56 2.33 16 13 C 0.23 5.14 2.28 -69.08 -0.16 4.98 16 14 H 0.06 1.32 4.07 -51.93 -0.21 1.11 16 15 C -0.15 -2.84 9.03 37.15 0.34 -2.50 16 16 C -0.51 -13.54 8.82 -34.44 -0.30 -13.84 16 17 H 0.08 2.35 7.67 -52.49 -0.40 1.95 16 18 C 0.08 2.18 5.47 -17.81 -0.10 2.08 16 19 N -0.88 -25.86 13.96 55.43 0.77 -25.09 16 20 Si 0.86 20.83 27.00 -169.99 -4.59 16.24 16 21 H -0.26 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.26 -5.81 6.81 56.52 0.38 -5.43 16 24 C -0.01 -0.08 9.18 -39.58 -0.36 -0.44 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 27 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 28 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 29 H 0.15 1.95 7.62 -52.48 -0.40 1.55 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.73 7.79 -51.93 -0.40 0.32 16 32 H 0.07 1.15 6.55 -51.93 -0.34 0.81 16 33 H 0.06 1.03 6.92 -51.93 -0.36 0.67 16 34 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.15 2.03 7.61 -52.49 -0.40 1.63 16 LS Contribution 340.86 15.07 5.14 5.14 Total: -1.00 -31.39 340.86 -9.90 -41.28 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.62 Total: -0.41 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -1.50 Total: -23.16 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.42 Total: -44.53 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -1.84 Total: -42.20 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.59 Total: 16.24 kcal Atomic # 16 Polarization: 51.03 SS G_CDS: -0.61 Total: 50.42 kcal Atomic # 35 Polarization: -0.49 SS G_CDS: -2.29 Total: -2.78 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.39 -9.90 -41.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195571806.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.197 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds