Wall clock time and date at job start Tue Mar 31 2020 07:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38240 * 119.99366 * 2 1 4 4 C 1.38301 * 119.99039 * 179.97438 * 3 2 1 5 5 Br 1.89107 * 120.00809 * 180.02562 * 4 3 2 6 6 C 1.38343 * 119.98103 * 0.02562 * 4 3 2 7 7 C 1.38201 * 119.98908 * 0.02562 * 6 4 3 8 8 S 1.76201 * 119.99166 * 180.02562 * 7 6 4 9 9 O 1.42098 * 106.40336 * 336.45395 * 8 7 6 10 10 O 1.42103 * 106.39750 * 203.53794 * 8 7 6 11 11 N 1.65597 * 107.21937 * 89.99875 * 8 7 6 12 12 C 1.46502 * 119.99819 * 269.99416 * 11 8 7 13 13 C 1.46502 * 120.00090 * 89.99486 * 11 8 7 14 14 H 1.09001 * 109.46784 * 0.02562 * 13 11 8 15 15 C 1.52992 * 109.47408 * 239.99906 * 13 11 8 16 16 C 1.50702 * 109.46730 * 120.00013 * 13 11 8 17 17 H 1.07997 * 120.00336 * 35.00002 * 16 13 11 18 18 C 1.37885 * 119.99478 * 214.72838 * 16 13 11 19 19 N 1.31518 * 119.99327 * 184.99664 * 18 16 13 20 20 Si 1.86790 * 120.00191 * 4.99839 * 18 16 13 21 21 H 1.48493 * 109.47326 * 85.04098 * 20 18 16 22 22 H 1.48502 * 109.47091 * 205.04078 * 20 18 16 23 23 H 1.48506 * 109.47410 * 325.03653 * 20 18 16 24 24 C 1.38222 * 119.99717 * 180.27111 * 2 1 3 25 25 H 1.09000 * 109.46683 * 90.00339 * 1 2 3 26 26 H 1.08999 * 109.46580 * 209.99751 * 1 2 3 27 27 H 1.08994 * 109.47459 * 329.99906 * 1 2 3 28 28 H 1.08006 * 120.00676 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.00911 * 180.02562 * 6 4 3 30 30 H 1.09001 * 109.47017 * 270.00010 * 12 11 8 31 31 H 1.09001 * 109.46985 * 30.00669 * 12 11 8 32 32 H 1.09004 * 109.46719 * 149.99995 * 12 11 8 33 33 H 1.09005 * 109.47269 * 294.04381 * 15 13 11 34 34 H 1.09005 * 109.46773 * 54.03971 * 15 13 11 35 35 H 1.08998 * 109.47452 * 174.04282 * 15 13 11 36 36 H 0.96998 * 119.99498 * 179.97438 * 19 18 16 37 37 H 1.07996 * 119.99189 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5811 1.1972 0.0005 5 35 4.5269 2.8347 0.0013 6 6 4.2723 -0.0012 0.0005 7 6 3.5806 -1.1976 -0.0005 8 16 4.4610 -2.7239 0.0001 9 8 5.7446 -2.4471 -0.5429 10 8 3.5794 -3.6958 -0.5455 11 7 4.7041 -3.1489 1.5821 12 6 5.9107 -2.7031 2.2832 13 6 3.7125 -3.9707 2.2805 14 1 2.8911 -4.2032 1.6028 15 6 3.1750 -3.2034 3.4900 16 6 4.3582 -5.2510 2.7443 17 1 5.3878 -5.2493 3.0703 18 6 3.6327 -6.4235 2.7576 19 7 4.1637 -7.5196 3.2537 20 14 1.8959 -6.4549 2.0710 21 1 1.9478 -6.6716 0.6029 22 1 1.1319 -7.5580 2.7074 23 1 1.2269 -5.1603 2.3570 24 6 2.1981 -1.1971 -0.0057 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6580 2.1326 -0.0004 29 1 5.3524 -0.0018 0.0014 30 1 6.7007 -3.4429 2.1532 31 1 6.2369 -1.7473 1.8732 32 1 5.6923 -2.5875 3.3448 33 1 3.9754 -3.0637 4.2168 34 1 2.8033 -2.2308 3.1674 35 1 2.3634 -3.7690 3.9477 36 1 3.6533 -8.3443 3.2634 37 1 1.6579 -2.1322 -0.0105 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195571806.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:38 Heat of formation + Delta-G solvation = -66.017182 kcal Electronic energy + Delta-G solvation = -22884.353897 eV Core-core repulsion = 19413.207079 eV Total energy + Delta-G solvation = -3471.146818 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 361.013 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.58861 -38.46751 -38.02490 -36.97869 -34.51342 -34.34648 -33.37767 -31.68505 -30.58099 -28.13143 -27.38135 -27.00574 -24.48849 -22.72670 -22.36933 -19.85567 -19.28316 -18.77788 -18.22249 -17.43048 -17.21351 -16.75844 -16.08590 -15.43304 -15.32389 -15.08710 -14.78141 -14.52290 -14.43106 -14.38550 -13.62768 -13.55844 -13.51387 -13.44012 -13.23732 -13.13447 -13.03067 -12.99380 -12.62921 -12.50268 -12.43261 -12.13545 -12.00005 -11.91174 -11.75919 -11.38244 -11.26013 -10.72783 -10.36427 -9.85490 -9.73802 -8.31526 -6.35157 -0.75250 -0.42264 -0.11198 0.40734 1.31530 1.42417 1.44428 1.88094 2.25787 2.33748 2.72345 3.07088 3.17730 3.56721 3.78247 3.86181 3.98837 4.05747 4.10439 4.40865 4.43441 4.60199 4.69210 4.77961 4.79568 4.80415 4.83612 4.86922 4.92826 5.10070 5.12380 5.22323 5.30620 5.52694 5.53949 5.56783 5.90109 6.32757 6.71395 7.29972 8.84228 Molecular weight = 361.01amu Principal moments of inertia in cm(-1) A = 0.017243 B = 0.003755 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.420412 B = 7455.080059 C = 8123.872700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C -0.034 4.034 4 C -0.114 4.114 5 Br -0.028 7.028 6 C -0.011 4.011 7 C -0.663 4.663 8 S 2.680 3.320 9 O -0.984 6.984 10 O -0.988 6.988 11 N -0.983 5.983 12 C 0.099 3.901 13 C 0.234 3.766 14 H 0.051 0.949 15 C -0.143 4.143 16 C -0.517 4.517 17 H 0.050 0.950 18 C 0.023 3.977 19 N -0.937 5.937 20 Si 0.909 3.091 21 H -0.277 1.277 22 H -0.279 1.279 23 H -0.227 1.227 24 C -0.024 4.024 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.172 0.828 29 H 0.150 0.850 30 H 0.040 0.960 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.268 0.732 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.889 25.064 -5.154 26.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.094 4.094 3 C -0.054 4.054 4 C -0.194 4.194 5 Br 0.057 6.943 6 C -0.032 4.032 7 C -0.753 4.753 8 S 2.774 3.226 9 O -0.974 6.974 10 O -0.979 6.979 11 N -0.822 5.822 12 C -0.046 4.046 13 C 0.129 3.871 14 H 0.069 0.931 15 C -0.203 4.203 16 C -0.557 4.557 17 H 0.069 0.931 18 C -0.176 4.176 19 N -0.576 5.576 20 Si 0.733 3.267 21 H -0.203 1.203 22 H -0.204 1.204 23 H -0.150 1.150 24 C -0.043 4.043 25 H 0.108 0.892 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.189 0.811 29 H 0.167 0.833 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.267 25.045 -5.840 26.469 hybrid contribution -0.623 -0.795 0.006 1.010 sum -6.890 24.249 -5.834 25.876 Atomic orbital electron populations 1.20960 0.87274 1.04873 1.04234 1.20388 0.98585 0.91411 0.99062 1.21659 0.91517 0.99891 0.92328 1.22003 0.95763 0.92123 1.09502 1.96753 1.75192 1.24569 1.97741 1.20931 1.00780 0.89788 0.91730 1.30874 1.07013 1.19114 1.18285 1.02018 0.73237 0.74036 0.73276 1.93495 1.40064 1.86266 1.77599 1.93521 1.67795 1.59099 1.77477 1.57441 1.30476 1.63867 1.30422 1.21433 0.85231 0.98801 0.99159 1.19063 0.87219 0.89002 0.91772 0.93125 1.22138 1.00758 0.98890 0.98493 1.21408 0.99545 0.92358 1.42371 0.93145 1.25745 1.01957 0.95114 0.94797 1.70011 1.39678 1.01307 1.46631 0.86302 0.81206 0.80047 0.79178 1.20266 1.20409 1.15005 1.21192 0.91614 1.00388 0.91146 0.89211 0.90559 0.88664 0.81098 0.83282 0.94093 0.89807 0.89603 0.92117 0.92288 0.92651 0.92328 0.83957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 10.01 71.24 0.71 -0.72 16 2 C -0.09 -1.77 5.88 -19.87 -0.12 -1.89 16 3 C -0.03 -0.59 9.44 22.29 0.21 -0.38 16 4 C -0.11 -2.39 6.22 22.31 0.14 -2.26 16 5 Br -0.03 -0.50 33.70 -20.37 -0.69 -1.18 16 6 C -0.01 -0.29 9.26 22.29 0.21 -0.08 16 7 C -0.66 -19.55 5.97 22.27 0.13 -19.42 16 8 S 2.68 102.31 5.64 -56.49 -0.32 101.99 16 9 O -0.98 -39.75 16.35 -128.00 -2.09 -41.84 16 10 O -0.99 -44.23 15.84 -128.00 -2.03 -46.26 16 11 N -0.98 -38.50 3.06 -520.44 -1.59 -40.09 16 12 C 0.10 3.31 9.39 127.77 1.20 4.50 16 13 C 0.23 10.28 2.28 44.24 0.10 10.38 16 14 H 0.05 2.31 4.07 -2.39 -0.01 2.30 16 15 C -0.14 -5.17 9.03 71.98 0.65 -4.52 16 16 C -0.52 -28.11 8.82 25.60 0.23 -27.89 16 17 H 0.05 3.00 7.67 -2.91 -0.02 2.97 16 18 C 0.02 1.33 5.47 84.66 0.46 1.79 16 19 N -0.94 -57.13 13.96 21.45 0.30 -56.83 16 20 Si 0.91 43.12 27.00 68.60 1.85 44.97 16 21 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.23 -9.35 6.81 99.48 0.68 -8.68 16 24 C -0.02 -0.62 9.18 22.27 0.20 -0.41 16 25 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 27 H 0.09 0.75 8.08 -2.39 -0.02 0.73 16 28 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 29 H 0.15 3.68 7.62 -2.91 -0.02 3.66 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 2.23 7.79 -2.39 -0.02 2.21 16 32 H 0.09 2.62 6.55 -2.38 -0.02 2.61 16 33 H 0.06 2.11 6.92 -2.38 -0.02 2.10 16 34 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.14 3.75 7.61 -2.91 -0.02 3.73 16 Total: -1.00 -70.78 340.86 0.61 -70.17 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 1.05 Total: 9.98 kcal Atomic # 6 Polarization: -45.03 SS G_CDS: 4.13 Total: -40.90 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -1.29 Total: -96.93 kcal Atomic # 8 Polarization: -83.98 SS G_CDS: -4.12 Total: -88.10 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.85 Total: 44.97 kcal Atomic # 16 Polarization: 102.31 SS G_CDS: -0.32 Total: 101.99 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -0.69 Total: -1.18 kcal Total: -70.78 0.61 -70.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195571806.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.152 kcal (2) G-P(sol) polarization free energy of solvation -70.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds