Wall clock time and date at job start Tue Mar 31 2020 07:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38235 * 120.00205 * 2 1 4 4 C 1.38223 * 120.00676 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.02140 * 359.97438 * 4 3 2 6 6 C 1.38197 * 120.01078 * 359.75091 * 5 4 3 7 7 C 1.50704 * 120.00470 * 180.25367 * 6 5 4 8 8 N 1.46496 * 109.46799 * 260.24956 * 7 6 5 9 9 S 1.65608 * 119.99764 * 164.99988 * 8 7 6 10 10 O 1.42100 * 104.27619 * 181.07135 * 9 8 7 11 11 O 1.42096 * 104.27682 * 308.92939 * 9 8 7 12 12 C 1.81400 * 104.44776 * 65.00306 * 9 8 7 13 13 C 1.52999 * 109.47059 * 179.97438 * 12 9 8 14 14 C 1.50698 * 109.47049 * 179.97438 * 13 12 9 15 15 H 1.07999 * 120.00323 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00029 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99842 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99778 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47221 * 90.00334 * 18 16 14 20 20 H 1.48501 * 109.47014 * 210.00292 * 18 16 14 21 21 H 1.48500 * 109.47314 * 330.00128 * 18 16 14 22 22 C 1.38308 * 120.00544 * 180.02562 * 2 1 3 23 23 Br 1.89100 * 120.00943 * 359.95772 * 22 2 1 24 24 H 1.09006 * 109.47074 * 269.97622 * 1 2 3 25 25 H 1.08989 * 109.47087 * 29.98008 * 1 2 3 26 26 H 1.09007 * 109.46754 * 149.98183 * 1 2 3 27 27 H 1.08004 * 120.00031 * 0.03915 * 3 2 1 28 28 H 1.08001 * 119.98533 * 180.02562 * 4 3 2 29 29 H 1.08005 * 119.99349 * 179.97438 * 5 4 3 30 30 H 1.08993 * 109.47301 * 20.25079 * 7 6 5 31 31 H 1.08999 * 109.47007 * 140.25112 * 7 6 5 32 32 H 0.96998 * 120.00321 * 345.00475 * 8 7 6 33 33 H 1.08999 * 109.46892 * 299.99871 * 12 9 8 34 34 H 1.09004 * 109.47261 * 59.99606 * 12 9 8 35 35 H 1.08999 * 109.47325 * 299.99805 * 13 12 9 36 36 H 1.09006 * 109.47101 * 60.00313 * 13 12 9 37 37 H 0.96998 * 119.99592 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2723 0.0002 -0.0005 6 6 3.5821 -1.1970 0.0052 7 6 4.3364 -2.5017 0.0110 8 7 4.3778 -3.0478 -1.3478 9 16 5.4395 -4.2631 -1.7197 10 8 5.2173 -4.5120 -3.1010 11 8 6.6945 -3.7868 -1.2538 12 6 4.8827 -5.6717 -0.7215 13 6 5.7948 -6.8725 -0.9804 14 6 5.3326 -8.0425 -0.1506 15 1 4.4740 -7.9400 0.4963 16 6 6.0060 -9.2438 -0.2174 17 7 5.6023 -10.2650 0.5064 18 14 7.4908 -9.4212 -1.3369 19 1 8.7210 -9.0573 -0.5890 20 1 7.5932 -10.8271 -1.8042 21 1 7.3385 -8.5204 -2.5076 22 6 2.1987 -1.1977 -0.0005 23 35 1.2536 -2.8356 -0.0001 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8899 -0.5142 27 1 1.6583 2.1325 0.0006 28 1 4.1202 2.1327 -0.0001 29 1 5.3524 0.0009 -0.0014 30 1 5.3530 -2.3321 0.3656 31 1 3.8344 -3.2087 0.6715 32 1 3.7835 -2.6974 -2.0296 33 1 4.9218 -5.4063 0.3350 34 1 3.8589 -5.9281 -0.9940 35 1 5.7553 -7.1377 -2.0369 36 1 6.8188 -6.6164 -0.7080 37 1 6.0759 -11.1102 0.4591 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195576946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:23 Heat of formation + Delta-G solvation = -56.222962 kcal Electronic energy + Delta-G solvation = -21635.700707 eV Core-core repulsion = 18164.978598 eV Total energy + Delta-G solvation = -3470.722109 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 361.013 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00424 -36.73864 -35.79013 -35.51634 -33.93530 -33.40612 -32.02826 -31.46837 -29.80211 -27.26857 -25.96595 -25.93070 -22.14415 -21.39890 -21.18099 -19.04344 -17.66376 -17.13728 -16.65729 -16.33049 -16.17523 -15.49364 -15.01190 -14.76519 -14.31880 -14.28555 -13.70421 -13.62181 -13.47303 -13.19540 -12.79164 -12.68273 -12.55833 -11.97897 -11.88194 -11.72846 -11.64308 -11.54170 -11.31967 -11.23781 -11.17925 -11.12228 -10.43929 -10.25797 -10.13645 -9.80712 -9.48197 -9.17474 -9.11313 -8.94797 -8.65046 -6.15341 -4.16414 0.54936 0.77770 0.93045 1.40179 2.96452 3.27468 3.32483 3.34867 3.39201 4.10110 4.21992 4.33347 4.36988 4.51886 4.61867 4.84775 4.91009 5.01327 5.11032 5.16551 5.25195 5.27541 5.37895 5.47646 5.52717 5.56320 5.74782 5.78378 5.93936 6.01584 6.08308 6.30199 6.44432 6.83341 6.93222 7.01484 7.56132 8.38029 8.86172 9.44398 10.97070 Molecular weight = 361.01amu Principal moments of inertia in cm(-1) A = 0.017998 B = 0.003240 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.337778 B = 8638.740899 C = 9648.956849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.059 4.059 3 C -0.114 4.114 4 C -0.102 4.102 5 C -0.102 4.102 6 C -0.062 4.062 7 C 0.149 3.851 8 N -1.118 6.118 9 S 2.590 3.410 10 O -0.965 6.965 11 O -0.966 6.966 12 C -0.582 4.582 13 C -0.007 4.007 14 C -0.518 4.518 15 H 0.078 0.922 16 C 0.071 3.929 17 N -0.896 5.896 18 Si 0.869 3.131 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.262 1.262 22 C -0.085 4.085 23 Br -0.035 7.035 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.136 0.864 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.414 0.586 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.032 0.968 36 H 0.028 0.972 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.788 25.203 0.597 27.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.061 4.061 3 C -0.133 4.133 4 C -0.121 4.121 5 C -0.122 4.122 6 C -0.065 4.065 7 C 0.023 3.977 8 N -0.875 5.875 9 S 2.687 3.313 10 O -0.955 6.955 11 O -0.956 6.956 12 C -0.715 4.715 13 C -0.046 4.046 14 C -0.557 4.557 15 H 0.096 0.904 16 C -0.131 4.131 17 N -0.534 5.534 18 Si 0.695 3.305 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.186 1.186 22 C -0.165 4.165 23 Br 0.051 6.949 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.148 0.852 28 H 0.148 0.852 29 H 0.154 0.846 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.248 0.752 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.248 24.408 0.165 26.472 hybrid contribution 0.231 0.081 -0.261 0.358 sum -10.017 24.489 -0.097 26.459 Atomic orbital electron populations 1.21008 0.90185 1.03812 1.03235 1.19816 0.96687 0.91511 0.98084 1.21071 0.94308 0.97165 1.00721 1.21288 0.94259 0.98323 0.98201 1.21173 1.00648 0.91135 0.99230 1.19735 0.91610 0.95769 0.99425 1.20300 1.01187 0.91974 0.84273 1.55718 1.59091 1.54944 1.17754 1.05613 0.74228 0.75866 0.75562 1.93564 1.85573 1.85413 1.30940 1.93541 1.40442 1.78802 1.82825 1.30285 1.11681 1.15287 1.14260 1.19411 0.93915 0.92490 0.98809 1.20850 1.15692 0.93681 1.25512 0.90389 1.24988 0.97244 0.95642 0.95253 1.69885 1.40730 1.02547 1.40227 0.86927 0.83556 0.77957 0.82023 1.19674 1.20788 1.18606 1.21803 0.94095 0.92098 1.08528 1.96775 1.74692 1.26021 1.97372 0.90355 0.90998 0.90328 0.85189 0.85173 0.84605 0.88732 0.89970 0.75230 0.85642 0.85363 0.94940 0.95368 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 9.55 36.01 0.34 -0.50 16 2 C -0.06 -0.50 5.88 -104.60 -0.62 -1.12 16 3 C -0.11 -0.82 9.70 -39.59 -0.38 -1.21 16 4 C -0.10 -0.75 10.05 -39.58 -0.40 -1.15 16 5 C -0.10 -0.90 9.67 -39.59 -0.38 -1.28 16 6 C -0.06 -0.63 5.28 -104.60 -0.55 -1.18 16 7 C 0.15 1.67 5.58 -5.19 -0.03 1.64 16 8 N -1.12 -14.24 5.88 -11.66 -0.07 -14.31 16 9 S 2.59 43.76 5.46 -107.50 -0.59 43.17 16 10 O -0.96 -19.05 18.08 -57.54 -1.04 -20.09 16 11 O -0.97 -18.56 17.50 -57.54 -1.01 -19.57 16 12 C -0.58 -10.61 6.01 37.16 0.22 -10.39 16 13 C -0.01 -0.16 4.05 -27.88 -0.11 -0.28 16 14 C -0.52 -14.47 9.66 -34.44 -0.33 -14.81 16 15 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 17 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 18 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 22 C -0.08 -0.86 6.22 -39.52 -0.25 -1.10 16 23 Br -0.03 -0.37 30.10 -68.01 -2.05 -2.41 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.37 8.08 -51.94 -0.42 -0.05 16 26 H 0.08 0.57 6.65 -51.93 -0.35 0.23 16 27 H 0.13 0.64 8.06 -52.48 -0.42 0.21 16 28 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 29 H 0.14 1.04 8.04 -52.48 -0.42 0.62 16 30 H 0.09 1.02 7.56 -51.93 -0.39 0.62 16 31 H 0.08 0.88 7.15 -51.93 -0.37 0.51 16 32 H 0.41 4.77 8.61 -34.48 -0.30 4.48 16 33 H 0.13 2.04 8.14 -51.92 -0.42 1.62 16 34 H 0.13 2.16 8.14 -51.92 -0.42 1.74 16 35 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 36 H 0.03 0.66 7.57 -51.93 -0.39 0.26 16 37 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 344.00 15.07 5.18 5.18 Total: -1.00 -34.73 344.00 -10.76 -45.48 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -4.71 Total: 1.44 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: -2.58 Total: -29.40 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.71 Total: -40.67 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -2.05 Total: -39.66 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: 43.76 SS G_CDS: -0.59 Total: 43.17 kcal Atomic # 35 Polarization: -0.37 SS G_CDS: -2.05 Total: -2.41 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.73 -10.76 -45.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195576946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.741 kcal (2) G-P(sol) polarization free energy of solvation -34.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds