Wall clock time and date at job start Tue Mar 31 2020 07:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38235 * 120.00205 * 2 1 4 4 C 1.38223 * 120.00676 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.02140 * 359.97438 * 4 3 2 6 6 C 1.38197 * 120.01078 * 359.75091 * 5 4 3 7 7 C 1.50704 * 120.00470 * 180.25367 * 6 5 4 8 8 N 1.46496 * 109.46799 * 260.24956 * 7 6 5 9 9 S 1.65608 * 119.99764 * 164.99988 * 8 7 6 10 10 O 1.42100 * 104.27619 * 181.07135 * 9 8 7 11 11 O 1.42096 * 104.27682 * 308.92939 * 9 8 7 12 12 C 1.81400 * 104.44776 * 65.00306 * 9 8 7 13 13 C 1.52999 * 109.47059 * 179.97438 * 12 9 8 14 14 C 1.50698 * 109.47049 * 179.97438 * 13 12 9 15 15 H 1.07999 * 120.00323 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00029 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99842 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99778 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47221 * 90.00334 * 18 16 14 20 20 H 1.48501 * 109.47014 * 210.00292 * 18 16 14 21 21 H 1.48500 * 109.47314 * 330.00128 * 18 16 14 22 22 C 1.38308 * 120.00544 * 180.02562 * 2 1 3 23 23 Br 1.89100 * 120.00943 * 359.95772 * 22 2 1 24 24 H 1.09006 * 109.47074 * 269.97622 * 1 2 3 25 25 H 1.08989 * 109.47087 * 29.98008 * 1 2 3 26 26 H 1.09007 * 109.46754 * 149.98183 * 1 2 3 27 27 H 1.08004 * 120.00031 * 0.03915 * 3 2 1 28 28 H 1.08001 * 119.98533 * 180.02562 * 4 3 2 29 29 H 1.08005 * 119.99349 * 179.97438 * 5 4 3 30 30 H 1.08993 * 109.47301 * 20.25079 * 7 6 5 31 31 H 1.08999 * 109.47007 * 140.25112 * 7 6 5 32 32 H 0.96998 * 120.00321 * 345.00475 * 8 7 6 33 33 H 1.08999 * 109.46892 * 299.99871 * 12 9 8 34 34 H 1.09004 * 109.47261 * 59.99606 * 12 9 8 35 35 H 1.08999 * 109.47325 * 299.99805 * 13 12 9 36 36 H 1.09006 * 109.47101 * 60.00313 * 13 12 9 37 37 H 0.96998 * 119.99592 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2723 0.0002 -0.0005 6 6 3.5821 -1.1970 0.0052 7 6 4.3364 -2.5017 0.0110 8 7 4.3778 -3.0478 -1.3478 9 16 5.4395 -4.2631 -1.7197 10 8 5.2173 -4.5120 -3.1010 11 8 6.6945 -3.7868 -1.2538 12 6 4.8827 -5.6717 -0.7215 13 6 5.7948 -6.8725 -0.9804 14 6 5.3326 -8.0425 -0.1506 15 1 4.4740 -7.9400 0.4963 16 6 6.0060 -9.2438 -0.2174 17 7 5.6023 -10.2650 0.5064 18 14 7.4908 -9.4212 -1.3369 19 1 8.7210 -9.0573 -0.5890 20 1 7.5932 -10.8271 -1.8042 21 1 7.3385 -8.5204 -2.5076 22 6 2.1987 -1.1977 -0.0005 23 35 1.2536 -2.8356 -0.0001 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8899 -0.5142 27 1 1.6583 2.1325 0.0006 28 1 4.1202 2.1327 -0.0001 29 1 5.3524 0.0009 -0.0014 30 1 5.3530 -2.3321 0.3656 31 1 3.8344 -3.2087 0.6715 32 1 3.7835 -2.6974 -2.0296 33 1 4.9218 -5.4063 0.3350 34 1 3.8589 -5.9281 -0.9940 35 1 5.7553 -7.1377 -2.0369 36 1 6.8188 -6.6164 -0.7080 37 1 6.0759 -11.1102 0.4591 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195576946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:23 Heat of formation + Delta-G solvation = -80.296360 kcal Electronic energy + Delta-G solvation = -21636.744608 eV Core-core repulsion = 18164.978598 eV Total energy + Delta-G solvation = -3471.766010 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 361.013 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.64748 -38.20183 -37.07951 -36.63167 -35.88752 -34.02672 -33.46662 -32.80951 -30.51762 -27.88096 -27.84270 -26.77109 -23.19143 -22.76458 -21.97198 -20.37752 -19.38886 -18.54650 -17.74848 -17.19914 -17.07383 -16.84146 -16.36969 -16.14455 -15.59657 -15.20119 -14.92539 -14.80981 -14.40357 -14.26726 -13.95497 -13.78522 -13.33121 -13.24687 -13.20960 -13.14992 -13.06384 -12.95667 -12.90865 -12.24750 -12.19184 -12.03903 -11.94291 -11.84533 -11.70486 -11.33515 -10.99782 -10.83539 -10.40559 -9.77796 -9.60138 -8.35747 -6.41396 -0.75605 0.08669 0.25116 0.68456 1.32757 1.34543 1.44822 1.80133 2.30361 2.62758 2.73623 2.98283 3.22092 3.49655 3.71668 3.90085 3.96981 4.07866 4.25699 4.29057 4.32182 4.41799 4.57556 4.65606 4.70570 4.77647 4.80968 4.91665 5.08542 5.12450 5.23974 5.31257 5.41980 5.46951 5.48167 5.87063 5.99437 6.17848 6.64754 7.22872 8.79882 Molecular weight = 361.01amu Principal moments of inertia in cm(-1) A = 0.017998 B = 0.003240 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.337778 B = 8638.740899 C = 9648.956849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.068 4.068 3 C -0.110 4.110 4 C -0.099 4.099 5 C -0.111 4.111 6 C -0.077 4.077 7 C 0.141 3.859 8 N -1.102 6.102 9 S 2.624 3.376 10 O -0.991 6.991 11 O -0.985 6.985 12 C -0.589 4.589 13 C -0.017 4.017 14 C -0.526 4.526 15 H 0.048 0.952 16 C 0.013 3.987 17 N -0.941 5.941 18 Si 0.925 3.075 19 H -0.259 1.259 20 H -0.275 1.275 21 H -0.249 1.249 22 C -0.099 4.099 23 Br -0.051 7.051 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.158 0.842 28 H 0.158 0.842 29 H 0.144 0.856 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.422 0.578 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.032 0.968 36 H 0.034 0.966 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.480 27.951 -0.009 29.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.070 4.070 3 C -0.129 4.129 4 C -0.117 4.117 5 C -0.131 4.131 6 C -0.080 4.080 7 C 0.016 3.984 8 N -0.862 5.862 9 S 2.720 3.280 10 O -0.982 6.982 11 O -0.975 6.975 12 C -0.721 4.721 13 C -0.056 4.056 14 C -0.565 4.565 15 H 0.067 0.933 16 C -0.186 4.186 17 N -0.581 5.581 18 Si 0.748 3.252 19 H -0.184 1.184 20 H -0.200 1.200 21 H -0.173 1.173 22 C -0.179 4.179 23 Br 0.035 6.965 24 H 0.102 0.898 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.176 0.824 28 H 0.175 0.825 29 H 0.162 0.838 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.258 0.742 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.947 27.154 -0.440 28.922 hybrid contribution 0.026 -0.633 0.005 0.633 sum -9.921 26.521 -0.435 28.319 Atomic orbital electron populations 1.21039 0.89144 1.04285 1.03713 1.20112 0.97646 0.91454 0.97750 1.21443 0.94529 0.97722 0.99194 1.21634 0.94511 0.98831 0.96734 1.21389 1.01275 0.91239 0.99183 1.19661 0.91660 0.95558 1.01170 1.20486 1.01933 0.92966 0.83036 1.55308 1.58573 1.53393 1.18963 1.04396 0.73916 0.75469 0.74229 1.93523 1.86049 1.86013 1.32577 1.93514 1.42010 1.79022 1.82986 1.30292 1.11219 1.14449 1.16102 1.19373 0.95267 0.93093 0.97830 1.21174 1.14655 0.95402 1.25281 0.93326 1.25883 1.00410 0.95413 0.96856 1.70015 1.42533 1.03299 1.42213 0.86016 0.80135 0.78495 0.80546 1.18383 1.20025 1.17269 1.21900 0.94125 0.92061 1.09842 1.96754 1.75048 1.27240 1.97490 0.89817 0.89153 0.91251 0.82444 0.82470 0.83774 0.88192 0.89683 0.74211 0.84030 0.84357 0.95005 0.94808 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 9.55 71.24 0.68 -0.76 16 2 C -0.07 -1.01 5.88 -19.85 -0.12 -1.13 16 3 C -0.11 -1.24 9.70 22.27 0.22 -1.03 16 4 C -0.10 -1.13 10.05 22.27 0.22 -0.91 16 5 C -0.11 -1.72 9.67 22.26 0.22 -1.50 16 6 C -0.08 -1.46 5.28 -19.85 -0.10 -1.56 16 7 C 0.14 3.01 5.58 85.64 0.48 3.49 16 8 N -1.10 -26.74 5.88 -190.80 -1.12 -27.86 16 9 S 2.62 85.74 5.46 -56.49 -0.31 85.43 16 10 O -0.99 -38.10 18.08 -127.65 -2.31 -40.41 16 11 O -0.99 -36.50 17.50 -127.65 -2.23 -38.74 16 12 C -0.59 -21.18 6.01 71.98 0.43 -20.75 16 13 C -0.02 -0.78 4.05 29.85 0.12 -0.66 16 14 C -0.53 -29.87 9.66 25.60 0.25 -29.62 16 15 H 0.05 2.95 7.99 -2.91 -0.02 2.93 16 16 C 0.01 0.74 5.47 84.65 0.46 1.21 16 17 N -0.94 -58.19 13.96 21.45 0.30 -57.89 16 18 Si 0.93 44.01 27.47 68.60 1.88 45.89 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 22 C -0.10 -1.87 6.22 22.31 0.14 -1.73 16 23 Br -0.05 -1.06 30.10 -20.37 -0.61 -1.68 16 24 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 25 H 0.09 0.68 8.08 -2.39 -0.02 0.66 16 26 H 0.07 0.93 6.65 -2.38 -0.02 0.92 16 27 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 28 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 29 H 0.14 1.90 8.04 -2.91 -0.02 1.88 16 30 H 0.10 2.02 7.56 -2.39 -0.02 2.00 16 31 H 0.09 1.75 7.15 -2.39 -0.02 1.74 16 32 H 0.42 9.21 8.61 -96.74 -0.83 8.38 16 33 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 34 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 35 H 0.03 1.49 7.20 -2.39 -0.02 1.47 16 36 H 0.03 1.54 7.57 -2.38 -0.02 1.52 16 37 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -74.62 344.00 -1.20 -75.82 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.20 Total: 14.36 kcal Atomic # 6 Polarization: -57.93 SS G_CDS: 2.99 Total: -54.94 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -0.82 Total: -85.75 kcal Atomic # 8 Polarization: -74.60 SS G_CDS: -4.54 Total: -79.14 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.89 kcal Atomic # 16 Polarization: 85.74 SS G_CDS: -0.31 Total: 85.43 kcal Atomic # 35 Polarization: -1.06 SS G_CDS: -0.61 Total: -1.68 kcal Total: -74.62 -1.20 -75.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195576946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.472 kcal (2) G-P(sol) polarization free energy of solvation -74.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds