Wall clock time and date at job start Tue Mar 31 2020 05:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86806 * 119.99592 * 2 1 4 4 H 1.48498 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46914 * 299.99648 * 3 2 1 6 6 H 1.48503 * 109.47422 * 59.99679 * 3 2 1 7 7 C 1.39891 * 120.00551 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00191 * 175.60070 * 7 2 1 9 9 C 1.41128 * 119.99820 * 355.60055 * 7 2 1 10 10 C 1.40887 * 120.15744 * 214.77068 * 9 7 2 11 11 C 1.36343 * 119.83118 * 180.02562 * 10 9 7 12 12 C 1.39534 * 120.16437 * 0.02562 * 11 10 9 13 13 N 1.39052 * 119.83671 * 179.97438 * 12 11 10 14 14 C 1.34771 * 120.00153 * 35.34261 * 13 12 11 15 15 O 1.21730 * 120.00109 * 355.70853 * 14 13 12 16 16 C 1.46629 * 120.00498 * 175.70811 * 14 13 12 17 17 C 1.37838 * 120.00391 * 180.02562 * 16 14 13 18 18 C 1.41149 * 119.99982 * 180.02562 * 17 16 14 19 19 C 1.38199 * 126.12288 * 179.97438 * 18 17 16 20 20 C 1.40228 * 106.51568 * 180.02562 * 19 18 17 21 21 C 1.35213 * 107.23320 * 0.02562 * 20 19 18 22 22 O 1.34038 * 109.06965 * 359.97438 * 21 20 19 23 23 C 1.48015 * 120.00007 * 0.02562 * 16 14 13 24 24 C 1.39534 * 120.14161 * 114.72240 * 23 16 14 25 25 C 1.37966 * 119.85606 * 179.74676 * 24 23 16 26 26 C 1.38364 * 120.14144 * 0.52998 * 25 24 23 27 27 C 1.38359 * 120.28155 * 359.72581 * 26 25 24 28 28 C 1.37968 * 120.14273 * 0.02562 * 27 26 25 29 29 C 1.39537 * 120.32431 * 0.23341 * 12 11 10 30 30 C 1.36344 * 120.16209 * 359.47675 * 29 12 11 31 31 H 0.96995 * 120.00593 * 0.02562 * 1 2 3 32 32 H 1.07999 * 120.08402 * 359.97438 * 10 9 7 33 33 H 1.08003 * 119.91700 * 179.97438 * 11 10 9 34 34 H 0.97002 * 120.00162 * 215.33673 * 13 12 11 35 35 H 1.08000 * 119.99603 * 359.97438 * 17 16 14 36 36 H 1.08001 * 126.74506 * 0.02562 * 19 18 17 37 37 H 1.08001 * 126.38347 * 180.02562 * 20 19 18 38 38 H 1.07998 * 125.46945 * 180.02562 * 21 20 19 39 39 H 1.07999 * 120.07138 * 0.02562 * 24 23 16 40 40 H 1.08001 * 119.92967 * 180.25574 * 25 24 23 41 41 H 1.07999 * 119.85517 * 179.70213 * 26 25 24 42 42 H 1.07995 * 119.92853 * 179.97438 * 27 26 25 43 43 H 1.07994 * 120.07072 * 179.97438 * 28 27 26 44 44 H 1.07997 * 119.91501 * 179.74686 * 29 12 11 45 45 H 1.07996 * 120.08398 * 180.25448 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6179 0.0000 4 1 3.7027 1.3466 -0.0006 5 1 1.8839 2.3965 -1.2126 6 1 1.8839 2.3966 1.2125 7 6 2.0083 -1.2114 0.0005 8 1 3.0860 -1.2128 -0.0712 9 6 1.3059 -2.4318 0.0948 10 6 1.8651 -3.5180 0.7966 11 6 1.1809 -4.6941 0.8831 12 6 -0.0698 -4.8238 0.2783 13 7 -0.7614 -6.0266 0.3703 14 6 -0.6810 -6.7659 1.4943 15 8 0.0577 -6.4208 2.3983 16 6 -1.4833 -7.9859 1.6285 17 6 -1.4015 -8.7417 2.7783 18 6 -2.1734 -9.9163 2.9071 19 6 -2.1896 -10.7651 3.9977 20 6 -3.0925 -11.7927 3.6896 21 6 -3.5809 -11.5400 2.4544 22 8 -3.0273 -10.4124 1.9869 23 6 -2.3811 -8.4058 0.5292 24 6 -2.1333 -9.5914 -0.1637 25 6 -2.9770 -9.9798 -1.1839 26 6 -4.0606 -9.1912 -1.5276 27 6 -4.3088 -8.0118 -0.8480 28 6 -3.4756 -7.6147 0.1775 29 6 -0.6276 -3.7541 -0.4230 30 6 0.0424 -2.5701 -0.5128 31 1 -0.4851 0.8400 -0.0004 32 1 2.8336 -3.4194 1.2642 33 1 1.6085 -5.5278 1.4204 34 1 -1.3019 -6.3336 -0.3744 35 1 -0.7460 -8.4355 3.5802 36 1 -1.6189 -10.6579 4.9083 37 1 -3.3499 -12.6301 4.3214 38 1 -4.3019 -12.1486 1.9290 39 1 -1.2855 -10.2058 0.1010 40 1 -2.7887 -10.8993 -1.7182 41 1 -4.7153 -9.4973 -2.3302 42 1 -5.1560 -7.4004 -1.1213 43 1 -3.6701 -6.6938 0.7070 44 1 -1.5942 -3.8631 -0.8920 45 1 -0.3923 -1.7417 -1.0525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218097451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:44 Heat of formation + Delta-G solvation = 50.285238 kcal Electronic energy + Delta-G solvation = -30228.779628 eV Core-core repulsion = 26143.070313 eV Total energy + Delta-G solvation = -4085.709315 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 359.131 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.70339 -40.03891 -38.85857 -37.27812 -34.74640 -34.37905 -33.29423 -32.90357 -31.05923 -30.75546 -29.56610 -29.01540 -28.19577 -25.42642 -23.93957 -22.69857 -22.39713 -21.79924 -21.52093 -20.89568 -20.12701 -19.05878 -17.80012 -17.33336 -17.07032 -16.47833 -16.27877 -16.05957 -15.27312 -15.05947 -15.02840 -14.42594 -14.38594 -14.29457 -13.86319 -13.50950 -13.29657 -13.06711 -12.94857 -12.86008 -12.77570 -12.59312 -12.33135 -12.11584 -11.70134 -11.36535 -11.32549 -11.26981 -11.15718 -10.97126 -10.74072 -10.58630 -10.08543 -10.04407 -9.51558 -9.44953 -9.25744 -9.00833 -8.90678 -8.74695 -7.93539 -7.53484 -6.83608 -6.61230 -4.33026 0.24984 1.22330 1.32044 1.98595 2.52146 2.75845 2.85003 3.10041 3.10083 3.14861 3.17379 3.54805 3.72958 3.78850 3.98921 4.47082 4.61313 4.71338 4.72963 4.82614 4.84039 4.87168 5.01091 5.25573 5.34828 5.40059 5.48861 5.55278 5.66198 5.72500 5.82772 5.90851 5.94740 6.04840 6.21310 6.26458 6.37510 6.40160 6.44157 6.46817 6.76907 6.85578 6.91342 6.94969 7.08002 7.21969 7.30842 7.65286 7.75872 7.87716 8.07593 8.27343 8.32618 8.62978 8.74320 8.93550 9.01105 10.29693 Molecular weight = 359.13amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.002226 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.664366 B =12575.781027 C =13582.594436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.459 4.459 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.205 4.205 11 C -0.084 4.084 12 C 0.003 3.997 13 N -0.638 5.638 14 C 0.541 3.459 15 O -0.531 6.531 16 C -0.118 4.118 17 C -0.008 4.008 18 C 0.001 3.999 19 C -0.172 4.172 20 C -0.219 4.219 21 C -0.031 4.031 22 O -0.145 6.145 23 C -0.049 4.049 24 C -0.078 4.078 25 C -0.122 4.122 26 C -0.116 4.116 27 C -0.119 4.119 28 C -0.103 4.103 29 C -0.119 4.119 30 C -0.141 4.141 31 H 0.277 0.723 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.397 0.603 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.200 0.800 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.091 0.909 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.461 -21.330 0.349 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.490 4.490 8 H 0.095 0.905 9 C 0.097 3.903 10 C -0.225 4.225 11 C -0.104 4.104 12 C -0.090 4.090 13 N -0.279 5.279 14 C 0.329 3.671 15 O -0.410 6.410 16 C -0.121 4.121 17 C -0.028 4.028 18 C -0.049 4.049 19 C -0.191 4.191 20 C -0.238 4.238 21 C -0.100 4.100 22 O -0.040 6.040 23 C -0.050 4.050 24 C -0.096 4.096 25 C -0.140 4.140 26 C -0.134 4.134 27 C -0.137 4.137 28 C -0.121 4.121 29 C -0.139 4.139 30 C -0.161 4.161 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.232 0.768 35 H 0.182 0.818 36 H 0.171 0.829 37 H 0.167 0.833 38 H 0.217 0.783 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.109 0.891 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.195 -20.755 0.691 23.134 hybrid contribution -0.144 0.433 -0.020 0.456 sum -10.338 -20.322 0.671 22.810 Atomic orbital electron populations 1.69771 1.07280 1.28604 1.38190 1.25887 0.94948 1.01192 0.92589 0.86149 0.80603 0.80852 0.78381 1.18579 1.20012 1.19985 1.19533 0.94773 0.90199 1.44476 0.90538 1.17742 0.92280 0.92033 0.88203 1.20806 1.01239 0.94940 1.05563 1.20410 0.92703 0.97861 0.99381 1.17268 0.94305 0.85740 1.11658 1.42867 1.48123 1.20990 1.15933 1.17846 0.83026 0.83525 0.82676 1.90812 1.39385 1.70734 1.40090 1.21110 0.99364 0.96639 0.95000 1.20937 0.95324 0.88985 0.97530 1.19796 0.97600 0.97809 0.89660 1.22357 1.01976 0.95312 0.99433 1.21716 1.02067 1.02292 0.97741 1.24339 1.00845 0.88830 0.96023 1.84535 1.45536 1.33560 1.40335 1.18708 0.95140 0.95402 0.95714 1.21087 0.98844 0.94948 0.94739 1.20996 0.95326 0.99872 0.97774 1.21189 0.97633 0.94957 0.99607 1.21057 0.99630 0.96874 0.96135 1.21290 0.94121 0.99408 0.97242 1.20318 0.98357 0.93119 1.02107 1.21183 0.97286 0.95535 1.02109 0.91200 0.88546 0.87398 0.76835 0.81819 0.82867 0.83332 0.78343 0.86417 0.86163 0.86243 0.85887 0.85784 0.89114 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.20 10.60 55.54 0.59 -20.61 16 2 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 3 Si 0.92 19.11 29.56 -169.99 -5.03 14.08 16 4 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 5 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.46 -12.31 9.02 -37.87 -0.34 -12.65 16 8 H 0.08 1.98 7.85 -52.48 -0.41 1.56 16 9 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 10 C -0.21 -5.26 9.74 -39.26 -0.38 -5.64 16 11 C -0.08 -2.03 8.61 -39.78 -0.34 -2.38 16 12 C 0.00 0.06 6.30 -83.62 -0.53 -0.46 16 13 N -0.64 -11.93 5.19 -10.93 -0.06 -11.99 16 14 C 0.54 9.97 7.55 -12.88 -0.10 9.87 16 15 O -0.53 -11.56 13.70 5.16 0.07 -11.49 16 16 C -0.12 -1.71 5.48 -102.65 -0.56 -2.27 16 17 C -0.01 -0.11 9.51 -38.62 -0.37 -0.47 16 18 C 0.00 0.01 6.59 -38.49 -0.25 -0.24 16 19 C -0.17 -1.67 10.91 -38.85 -0.42 -2.10 16 20 C -0.22 -1.81 10.86 -39.91 -0.43 -2.25 16 21 C -0.03 -0.25 12.06 29.66 0.36 0.10 16 22 O -0.14 -1.57 6.36 4.52 0.03 -1.54 16 23 C -0.05 -0.62 3.14 -104.92 -0.33 -0.95 16 24 C -0.08 -0.87 6.99 -39.20 -0.27 -1.14 16 25 C -0.12 -1.15 10.03 -39.63 -0.40 -1.54 16 26 C -0.12 -1.06 10.04 -39.49 -0.40 -1.46 16 27 C -0.12 -1.21 10.03 -39.64 -0.40 -1.61 16 28 C -0.10 -1.23 8.81 -39.19 -0.35 -1.58 16 29 C -0.12 -2.76 9.90 -39.78 -0.39 -3.15 16 30 C -0.14 -3.66 8.61 -39.26 -0.34 -4.00 16 31 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 32 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 33 H 0.11 2.58 6.22 -52.48 -0.33 2.25 16 34 H 0.40 6.40 7.00 -40.82 -0.29 6.12 16 35 H 0.16 2.05 7.58 -52.49 -0.40 1.65 16 36 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.20 0.93 8.06 -52.49 -0.42 0.50 16 39 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 44 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 45 H 0.13 3.52 6.13 -52.49 -0.32 3.20 16 LS Contribution 385.54 15.07 5.81 5.81 Total: -1.00 -31.17 385.54 -10.62 -41.79 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -5.11 Total: 14.08 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: -6.93 Total: -30.15 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.53 Total: -32.60 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.10 Total: -13.03 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.17 -10.62 -41.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218097451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.078 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds