Wall clock time and date at job start Tue Mar 31 2020 05:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86806 * 119.99592 * 2 1 4 4 H 1.48498 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46914 * 299.99648 * 3 2 1 6 6 H 1.48503 * 109.47422 * 59.99679 * 3 2 1 7 7 C 1.39891 * 120.00551 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00191 * 175.60070 * 7 2 1 9 9 C 1.41128 * 119.99820 * 355.60055 * 7 2 1 10 10 C 1.40887 * 120.15744 * 214.77068 * 9 7 2 11 11 C 1.36343 * 119.83118 * 180.02562 * 10 9 7 12 12 C 1.39534 * 120.16437 * 0.02562 * 11 10 9 13 13 N 1.39052 * 119.83671 * 179.97438 * 12 11 10 14 14 C 1.34771 * 120.00153 * 35.34261 * 13 12 11 15 15 O 1.21730 * 120.00109 * 355.70853 * 14 13 12 16 16 C 1.46629 * 120.00498 * 175.70811 * 14 13 12 17 17 C 1.37838 * 120.00391 * 180.02562 * 16 14 13 18 18 C 1.41149 * 119.99982 * 180.02562 * 17 16 14 19 19 C 1.38199 * 126.12288 * 179.97438 * 18 17 16 20 20 C 1.40228 * 106.51568 * 180.02562 * 19 18 17 21 21 C 1.35213 * 107.23320 * 0.02562 * 20 19 18 22 22 O 1.34038 * 109.06965 * 359.97438 * 21 20 19 23 23 C 1.48015 * 120.00007 * 0.02562 * 16 14 13 24 24 C 1.39534 * 120.14161 * 114.72240 * 23 16 14 25 25 C 1.37966 * 119.85606 * 179.74676 * 24 23 16 26 26 C 1.38364 * 120.14144 * 0.52998 * 25 24 23 27 27 C 1.38359 * 120.28155 * 359.72581 * 26 25 24 28 28 C 1.37968 * 120.14273 * 0.02562 * 27 26 25 29 29 C 1.39537 * 120.32431 * 0.23341 * 12 11 10 30 30 C 1.36344 * 120.16209 * 359.47675 * 29 12 11 31 31 H 0.96995 * 120.00593 * 0.02562 * 1 2 3 32 32 H 1.07999 * 120.08402 * 359.97438 * 10 9 7 33 33 H 1.08003 * 119.91700 * 179.97438 * 11 10 9 34 34 H 0.97002 * 120.00162 * 215.33673 * 13 12 11 35 35 H 1.08000 * 119.99603 * 359.97438 * 17 16 14 36 36 H 1.08001 * 126.74506 * 0.02562 * 19 18 17 37 37 H 1.08001 * 126.38347 * 180.02562 * 20 19 18 38 38 H 1.07998 * 125.46945 * 180.02562 * 21 20 19 39 39 H 1.07999 * 120.07138 * 0.02562 * 24 23 16 40 40 H 1.08001 * 119.92967 * 180.25574 * 25 24 23 41 41 H 1.07999 * 119.85517 * 179.70213 * 26 25 24 42 42 H 1.07995 * 119.92853 * 179.97438 * 27 26 25 43 43 H 1.07994 * 120.07072 * 179.97438 * 28 27 26 44 44 H 1.07997 * 119.91501 * 179.74686 * 29 12 11 45 45 H 1.07996 * 120.08398 * 180.25448 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6179 0.0000 4 1 3.7027 1.3466 -0.0006 5 1 1.8839 2.3965 -1.2126 6 1 1.8839 2.3966 1.2125 7 6 2.0083 -1.2114 0.0005 8 1 3.0860 -1.2128 -0.0712 9 6 1.3059 -2.4318 0.0948 10 6 1.8651 -3.5180 0.7966 11 6 1.1809 -4.6941 0.8831 12 6 -0.0698 -4.8238 0.2783 13 7 -0.7614 -6.0266 0.3703 14 6 -0.6810 -6.7659 1.4943 15 8 0.0577 -6.4208 2.3983 16 6 -1.4833 -7.9859 1.6285 17 6 -1.4015 -8.7417 2.7783 18 6 -2.1734 -9.9163 2.9071 19 6 -2.1896 -10.7651 3.9977 20 6 -3.0925 -11.7927 3.6896 21 6 -3.5809 -11.5400 2.4544 22 8 -3.0273 -10.4124 1.9869 23 6 -2.3811 -8.4058 0.5292 24 6 -2.1333 -9.5914 -0.1637 25 6 -2.9770 -9.9798 -1.1839 26 6 -4.0606 -9.1912 -1.5276 27 6 -4.3088 -8.0118 -0.8480 28 6 -3.4756 -7.6147 0.1775 29 6 -0.6276 -3.7541 -0.4230 30 6 0.0424 -2.5701 -0.5128 31 1 -0.4851 0.8400 -0.0004 32 1 2.8336 -3.4194 1.2642 33 1 1.6085 -5.5278 1.4204 34 1 -1.3019 -6.3336 -0.3744 35 1 -0.7460 -8.4355 3.5802 36 1 -1.6189 -10.6579 4.9083 37 1 -3.3499 -12.6301 4.3214 38 1 -4.3019 -12.1486 1.9290 39 1 -1.2855 -10.2058 0.1010 40 1 -2.7887 -10.8993 -1.7182 41 1 -4.7153 -9.4973 -2.3302 42 1 -5.1560 -7.4004 -1.1213 43 1 -3.6701 -6.6938 0.7070 44 1 -1.5942 -3.8631 -0.8920 45 1 -0.3923 -1.7417 -1.0525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218097451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:42 Heat of formation + Delta-G solvation = 35.623963 kcal Electronic energy + Delta-G solvation = -30229.415388 eV Core-core repulsion = 26143.070313 eV Total energy + Delta-G solvation = -4086.345075 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 359.131 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.45261 -41.43928 -39.89232 -39.03667 -36.27141 -35.61996 -34.72386 -34.01119 -31.91033 -31.62802 -31.44523 -30.73542 -29.20336 -27.07665 -25.16918 -23.66064 -23.41240 -23.07542 -22.53002 -22.47268 -21.45035 -20.26685 -19.28609 -18.67971 -18.44650 -17.64226 -17.22160 -17.03153 -16.88037 -16.24422 -16.01034 -15.91468 -15.64390 -15.48872 -15.19466 -14.80750 -14.52845 -14.26955 -14.04287 -14.01606 -13.81299 -13.66744 -13.57579 -13.49836 -13.24101 -13.12584 -12.89631 -12.78428 -12.50546 -12.13050 -12.06721 -11.78196 -11.51722 -11.41147 -11.24895 -10.95249 -10.77382 -10.67704 -9.78179 -9.65938 -9.49232 -8.88169 -8.65997 -8.51373 -6.34151 -0.72024 0.41754 0.53903 0.79001 1.11651 1.23776 1.39447 1.47547 1.54963 1.76020 2.11357 2.23274 2.26943 2.32313 2.79715 2.91503 3.55419 3.63880 3.72072 4.00815 4.07912 4.09937 4.14702 4.24072 4.31398 4.36096 4.51326 4.56728 4.60263 4.71539 4.82967 4.90694 4.95552 5.00050 5.09380 5.12777 5.13207 5.17785 5.21538 5.32803 5.40627 5.56811 5.60511 5.64016 5.65560 5.67802 5.88149 5.99573 6.10545 6.12223 6.16711 6.36023 6.62564 6.66614 6.95133 6.97042 7.27683 8.41386 Molecular weight = 359.13amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.002226 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.664366 B =12575.781027 C =13582.594436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.026 3.974 3 Si 0.990 3.010 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.269 1.269 7 C -0.494 4.494 8 H 0.074 0.926 9 C 0.069 3.931 10 C -0.219 4.219 11 C -0.095 4.095 12 C 0.017 3.983 13 N -0.635 5.635 14 C 0.544 3.456 15 O -0.573 6.573 16 C -0.151 4.151 17 C 0.020 3.980 18 C -0.041 4.041 19 C -0.156 4.156 20 C -0.230 4.230 21 C -0.014 4.014 22 O -0.155 6.155 23 C -0.056 4.056 24 C -0.085 4.085 25 C -0.117 4.117 26 C -0.112 4.112 27 C -0.122 4.122 28 C -0.121 4.121 29 C -0.118 4.118 30 C -0.157 4.157 31 H 0.285 0.715 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.411 0.589 35 H 0.160 0.840 36 H 0.168 0.832 37 H 0.176 0.824 38 H 0.237 0.763 39 H 0.115 0.885 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.139 0.861 43 H 0.109 0.891 44 H 0.120 0.880 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.521 -23.961 -0.117 27.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.185 4.185 3 Si 0.811 3.189 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.194 1.194 7 C -0.525 4.525 8 H 0.092 0.908 9 C 0.066 3.934 10 C -0.239 4.239 11 C -0.115 4.115 12 C -0.076 4.076 13 N -0.278 5.278 14 C 0.335 3.665 15 O -0.455 6.455 16 C -0.154 4.154 17 C 0.001 3.999 18 C -0.089 4.089 19 C -0.175 4.175 20 C -0.248 4.248 21 C -0.084 4.084 22 O -0.050 6.050 23 C -0.056 4.056 24 C -0.103 4.103 25 C -0.135 4.135 26 C -0.129 4.129 27 C -0.140 4.140 28 C -0.139 4.139 29 C -0.138 4.138 30 C -0.177 4.177 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.248 0.752 35 H 0.177 0.823 36 H 0.185 0.815 37 H 0.193 0.807 38 H 0.253 0.747 39 H 0.133 0.867 40 H 0.164 0.836 41 H 0.166 0.834 42 H 0.157 0.843 43 H 0.128 0.872 44 H 0.138 0.862 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.277 -23.423 0.207 26.447 hybrid contribution 0.330 0.864 0.266 0.963 sum -11.947 -22.559 0.473 25.531 Atomic orbital electron populations 1.69832 1.08612 1.29962 1.38437 1.26770 0.95831 1.04393 0.91553 0.85036 0.79060 0.76006 0.78805 1.18351 1.18688 1.19413 1.19744 0.94876 0.91225 1.46661 0.90802 1.18054 0.93285 0.92757 0.89287 1.20936 1.01668 0.95371 1.05966 1.20515 0.93517 0.97541 0.99886 1.17343 0.93685 0.87030 1.09588 1.42767 1.48132 1.19852 1.17003 1.18461 0.82308 0.84128 0.81582 1.90775 1.41347 1.72090 1.41318 1.20730 1.01544 0.96039 0.97127 1.21038 0.93750 0.88825 0.96331 1.19630 0.99719 0.98508 0.91079 1.22771 1.01000 0.94675 0.99049 1.22097 1.01690 1.02728 0.98312 1.25233 0.99600 0.87484 0.96045 1.84535 1.45545 1.34430 1.40485 1.18576 0.95098 0.96316 0.95617 1.21147 0.99291 0.94607 0.95263 1.21300 0.94642 1.00652 0.96901 1.21527 0.97647 0.94095 0.99658 1.21294 0.99642 0.97565 0.95468 1.21299 0.94953 0.99314 0.98377 1.20535 0.99213 0.92231 1.01814 1.21164 0.97520 0.96274 1.02787 0.90435 0.88313 0.87380 0.75180 0.82296 0.81463 0.80673 0.74665 0.86661 0.83599 0.83407 0.84321 0.87238 0.86184 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.08 10.60 21.82 0.23 -44.85 16 2 C 0.03 1.38 5.42 85.24 0.46 1.84 16 3 Si 0.99 39.74 29.56 68.60 2.03 41.76 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 6 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 7 C -0.49 -27.66 9.02 23.38 0.21 -27.45 16 8 H 0.07 4.00 7.85 -2.91 -0.02 3.97 16 9 C 0.07 3.88 5.55 -21.27 -0.12 3.77 16 10 C -0.22 -11.81 9.74 22.48 0.22 -11.60 16 11 C -0.09 -4.80 8.61 22.14 0.19 -4.61 16 12 C 0.02 0.80 6.30 38.62 0.24 1.04 16 13 N -0.63 -24.33 5.19 -306.71 -1.59 -25.92 16 14 C 0.54 20.81 7.55 86.43 0.65 21.46 16 15 O -0.57 -26.13 13.70 -4.45 -0.06 -26.20 16 16 C -0.15 -4.49 5.48 -18.59 -0.10 -4.59 16 17 C 0.02 0.53 9.51 22.89 0.22 0.74 16 18 C -0.04 -0.88 6.59 22.98 0.15 -0.73 16 19 C -0.16 -2.68 10.91 22.74 0.25 -2.43 16 20 C -0.23 -2.96 10.86 22.06 0.24 -2.72 16 21 C -0.01 -0.18 12.06 67.12 0.81 0.63 16 22 O -0.16 -3.01 6.36 -6.75 -0.04 -3.05 16 23 C -0.06 -1.39 3.14 -20.06 -0.06 -1.45 16 24 C -0.08 -1.77 6.99 22.52 0.16 -1.61 16 25 C -0.12 -1.85 10.03 22.24 0.22 -1.63 16 26 C -0.11 -1.67 10.04 22.33 0.22 -1.45 16 27 C -0.12 -2.23 10.03 22.23 0.22 -2.01 16 28 C -0.12 -2.86 8.81 22.52 0.20 -2.66 16 29 C -0.12 -5.59 9.90 22.14 0.22 -5.37 16 30 C -0.16 -8.49 8.61 22.48 0.19 -8.29 16 31 H 0.28 13.82 8.30 -92.71 -0.77 13.05 16 32 H 0.10 5.08 8.06 -2.91 -0.02 5.05 16 33 H 0.11 5.43 6.22 -2.91 -0.02 5.41 16 34 H 0.41 13.39 7.00 -92.71 -0.65 12.74 16 35 H 0.16 4.15 7.58 -2.91 -0.02 4.13 16 36 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 37 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 38 H 0.24 0.98 8.06 -2.91 -0.02 0.95 16 39 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 41 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 43 H 0.11 2.80 8.06 -2.91 -0.02 2.78 16 44 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 45 H 0.12 6.71 6.13 -2.91 -0.02 6.69 16 Total: -1.00 -71.27 385.54 5.75 -65.52 By element: Atomic # 1 Polarization: 41.45 SS G_CDS: 0.39 Total: 41.84 kcal Atomic # 6 Polarization: -53.91 SS G_CDS: 4.80 Total: -49.11 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -1.36 Total: -70.77 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.10 Total: -29.25 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.76 kcal Total: -71.27 5.75 -65.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218097451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.143 kcal (2) G-P(sol) polarization free energy of solvation -71.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds