Wall clock time and date at job start Tue Mar 31 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 111.00371 * 2 1 4 4 C 1.50704 * 109.46754 * 66.04673 * 3 2 1 5 5 N 1.29949 * 126.28694 * 269.69041 * 4 3 2 6 6 O 1.21301 * 110.24504 * 179.84808 * 5 4 3 7 7 C 1.33636 * 109.81693 * 0.41926 * 6 5 4 8 8 C 1.50704 * 126.55561 * 179.76464 * 7 6 5 9 9 C 1.53003 * 117.49302 * 8.59513 * 8 7 6 10 10 C 1.52996 * 60.00005 * 252.51364 * 9 8 7 11 11 N 1.31130 * 106.89624 * 359.74180 * 7 6 5 12 12 C 1.46899 * 110.99957 * 236.04757 * 2 1 3 13 13 H 1.09000 * 110.27711 * 65.72119 * 12 2 1 14 14 C 1.54600 * 110.30792 * 303.53305 * 12 2 1 15 15 C 1.54937 * 102.92194 * 219.12480 * 14 12 2 16 16 N 1.48534 * 103.22554 * 37.41258 * 15 14 12 17 17 C 1.46907 * 111.00175 * 200.28000 * 16 15 14 18 18 C 1.52995 * 109.46959 * 287.40015 * 17 16 15 19 19 H 1.09000 * 109.46865 * 304.99433 * 18 17 16 20 20 C 1.47195 * 109.47510 * 64.99782 * 18 17 16 21 21 N 6.58229 * 109.68306 * 200.96660 * 2 1 3 22 22 C 1.53002 * 109.47007 * 185.00139 * 18 17 16 23 23 C 1.50703 * 109.47054 * 175.00109 * 22 18 17 24 24 H 1.07998 * 120.00339 * 359.97438 * 23 22 18 25 25 C 1.37877 * 119.99744 * 179.97438 * 23 22 18 26 26 N 1.31515 * 120.00286 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00091 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46867 * 60.00005 * 27 25 23 29 29 H 1.48495 * 109.47303 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47197 * 300.00482 * 27 25 23 31 31 C 1.47901 * 105.82069 * 320.79489 * 16 15 14 32 32 H 1.09003 * 109.46973 * 55.98985 * 1 2 3 33 33 H 1.09000 * 109.47321 * 175.99326 * 1 2 3 34 34 H 1.08998 * 109.46587 * 295.99550 * 1 2 3 35 35 H 1.08996 * 109.47173 * 306.04881 * 3 2 1 36 36 H 1.08995 * 109.47124 * 186.04397 * 3 2 1 37 37 H 1.08997 * 115.55496 * 154.30568 * 8 7 6 38 38 H 1.08997 * 117.49997 * 0.02562 * 9 8 7 39 39 H 1.09002 * 117.49543 * 145.02464 * 9 8 7 40 40 H 1.09003 * 117.50442 * 252.51198 * 10 9 8 41 41 H 1.09002 * 117.49968 * 107.48837 * 10 9 8 42 42 H 1.08999 * 110.72571 * 337.47837 * 14 12 2 43 43 H 1.09004 * 110.72683 * 100.76990 * 14 12 2 44 44 H 1.09006 * 110.67031 * 278.98384 * 15 14 12 45 45 H 1.09001 * 110.81540 * 155.91458 * 15 14 12 46 46 H 1.09001 * 109.46970 * 47.39681 * 17 16 15 47 47 H 1.08995 * 109.47093 * 167.39221 * 17 16 15 48 48 H 1.09007 * 109.46850 * 294.99119 * 22 18 17 49 49 H 1.08996 * 109.47357 * 54.99220 * 22 18 17 50 50 H 0.96996 * 120.00199 * 179.97438 * 26 25 23 51 51 H 1.09005 * 109.91507 * 265.97465 * 31 16 15 52 52 H 1.08999 * 109.91907 * 144.68525 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6371 2.0470 1.2985 5 7 0.5631 2.7396 1.5342 6 8 0.5695 3.1485 2.6762 7 6 1.6861 2.7509 3.2935 8 6 2.0806 3.0515 4.7166 9 6 1.0360 3.7192 5.6132 10 6 2.2378 4.5215 5.1105 11 7 2.3726 2.0488 2.4245 12 6 1.9955 -0.7659 -1.1376 13 1 1.7384 -0.2739 -2.0756 14 6 1.4400 -2.2086 -1.1162 15 6 2.6605 -3.0563 -1.5547 16 7 3.8040 -2.3687 -0.9020 17 6 5.0710 -2.7126 -1.5612 18 6 5.4525 -4.1528 -1.2130 19 1 5.4807 -4.2693 -0.1297 20 6 4.4555 -5.0753 -1.7801 21 7 3.6861 -5.7873 -2.2177 22 6 6.8310 -4.4703 -1.7961 23 6 7.2604 -5.8444 -1.3506 24 1 6.6150 -6.4323 -0.7148 25 6 8.4774 -6.3511 -1.7546 26 7 9.2632 -5.6355 -2.5292 27 14 9.0101 -8.0541 -1.2019 28 1 8.0267 -9.0594 -1.6789 29 1 10.3474 -8.3628 -1.7689 30 1 9.0792 -8.0942 0.2809 31 6 3.5227 -0.9212 -1.0165 32 1 -0.3633 0.5748 -0.8519 33 1 -0.3634 -1.0251 -0.0718 34 1 -0.3632 0.4504 0.9237 35 1 1.5613 1.9273 -0.8308 36 1 3.0798 1.3443 -0.1082 37 1 2.7554 2.3315 5.1795 38 1 0.0633 3.9406 5.1739 39 1 1.0233 3.4383 6.6663 40 1 3.0158 4.7686 5.8329 41 1 2.0559 5.2712 4.3404 42 1 1.1202 -2.4839 -0.1112 43 1 0.6201 -2.3168 -1.8263 44 1 2.7704 -3.0406 -2.6391 45 1 2.5705 -4.0807 -1.1932 46 1 4.9560 -2.6182 -2.6410 47 1 5.8540 -2.0362 -1.2187 48 1 6.7807 -4.4405 -2.8846 49 1 7.5526 -3.7325 -1.4454 50 1 10.1195 -5.9918 -2.8131 51 1 4.0086 -0.5177 -1.9050 52 1 3.8794 -0.4021 -0.1270 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221796333.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:07 Heat of formation + Delta-G solvation = 143.670637 kcal Electronic energy + Delta-G solvation = -31389.530942 eV Core-core repulsion = 27200.980799 eV Total energy + Delta-G solvation = -4188.550143 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -45.89807 -39.79506 -38.02959 -37.65280 -36.22780 -35.35707 -33.87987 -32.66189 -32.05247 -30.28485 -29.05034 -28.19829 -26.40481 -25.38079 -24.72858 -23.51838 -23.11367 -22.96110 -21.78865 -21.05052 -20.62186 -20.06735 -18.43211 -17.81884 -17.02674 -16.82828 -16.57059 -16.42487 -15.89312 -15.38149 -15.18472 -14.82848 -14.52293 -14.31980 -14.05055 -13.49432 -13.47156 -13.31403 -12.94205 -12.70383 -12.61731 -12.55076 -12.36484 -12.29197 -12.19358 -12.12680 -12.04939 -11.89381 -11.70835 -11.41879 -11.29563 -11.22494 -11.19496 -11.12170 -11.06846 -10.88784 -10.73149 -10.66424 -10.43932 -10.20614 -10.02756 -9.50252 -9.21770 -8.73226 -8.43022 -8.26452 -6.07371 -4.10298 0.76948 1.84810 2.37599 3.04689 3.23582 3.33168 3.37004 3.40883 3.52808 3.61396 3.67675 3.79160 4.07076 4.09331 4.23287 4.28505 4.40787 4.43975 4.63471 4.73019 4.84499 4.89366 4.97532 4.99961 5.01096 5.14674 5.17982 5.23985 5.30189 5.30680 5.36094 5.39010 5.43375 5.44516 5.54069 5.57675 5.66382 5.72043 5.72930 5.73271 5.83480 5.99588 6.06041 6.17922 6.39345 6.57133 6.58815 6.72654 7.00251 7.17942 7.45809 7.55447 7.87190 7.87718 8.25682 8.44671 8.93986 9.54904 11.03484 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.001804 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.529394 B =15514.250797 C =16881.282654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.522 5.522 3 C 0.141 3.859 4 C 0.188 3.812 5 N -0.384 5.384 6 O 0.074 5.926 7 C 0.207 3.793 8 C -0.079 4.079 9 C -0.159 4.159 10 C -0.153 4.153 11 N -0.459 5.459 12 C 0.077 3.923 13 H 0.051 0.949 14 C -0.114 4.114 15 C 0.029 3.971 16 N -0.509 5.509 17 C 0.054 3.946 18 C 0.009 3.991 19 H 0.111 0.889 20 C 0.250 3.750 21 N -0.482 5.482 22 C 0.033 3.967 23 C -0.526 4.526 24 H 0.056 0.944 25 C 0.062 3.938 26 N -0.892 5.892 27 Si 0.892 3.108 28 H -0.277 1.277 29 H -0.287 1.287 30 H -0.274 1.274 31 C 0.041 3.959 32 H 0.029 0.971 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.112 0.888 37 H 0.152 0.848 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.043 0.957 45 H 0.090 0.910 46 H 0.041 0.959 47 H 0.094 0.906 48 H 0.023 0.977 49 H 0.040 0.960 50 H 0.263 0.737 51 H 0.047 0.953 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.186 23.966 12.301 31.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.247 5.247 3 C 0.012 3.988 4 C -0.085 4.085 5 N -0.092 5.092 6 O 0.015 5.985 7 C -0.013 4.013 8 C -0.099 4.099 9 C -0.197 4.197 10 C -0.191 4.191 11 N -0.191 5.191 12 C -0.032 4.032 13 H 0.069 0.931 14 C -0.152 4.152 15 C -0.099 4.099 16 N -0.233 5.233 17 C -0.075 4.075 18 C -0.013 4.013 19 H 0.129 0.871 20 C -0.066 4.066 21 N -0.159 5.159 22 C -0.006 4.006 23 C -0.564 4.564 24 H 0.075 0.925 25 C -0.140 4.140 26 N -0.531 5.531 27 Si 0.719 3.281 28 H -0.203 1.203 29 H -0.212 1.212 30 H -0.200 1.200 31 C -0.088 4.088 32 H 0.047 0.953 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.130 0.870 37 H 0.169 0.831 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.120 0.880 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.109 0.891 46 H 0.059 0.941 47 H 0.112 0.888 48 H 0.042 0.958 49 H 0.058 0.942 50 H 0.072 0.928 51 H 0.066 0.934 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.221 22.376 11.728 31.149 hybrid contribution 0.408 -0.128 -1.103 1.183 sum -17.814 22.248 10.626 30.417 Atomic orbital electron populations 1.22453 0.86825 1.02509 1.00862 1.61999 1.08143 1.11030 1.43564 1.20345 1.02518 0.88229 0.87745 1.25589 0.87916 0.97646 0.97372 1.74661 1.22052 1.16201 0.96310 1.85249 1.38558 1.56900 1.17761 1.27687 0.83202 0.92933 0.97486 1.20340 1.05766 0.99348 0.84464 1.23177 0.94744 1.01766 0.99972 1.23173 1.01102 0.91345 1.03508 1.71901 1.29049 1.18394 0.99793 1.22547 0.95483 0.94535 0.90593 0.93145 1.22602 0.97376 0.92550 1.02695 1.23485 0.90005 0.99550 0.96905 1.64847 1.01987 1.04470 1.52006 1.22441 0.91710 0.96580 0.96763 1.19290 0.92776 0.87615 1.01596 0.87121 1.29185 0.91978 0.93048 0.92381 1.81027 1.13472 1.10798 1.10636 1.19162 0.87075 0.97738 0.96625 1.21108 1.02991 1.00923 1.31343 0.92545 1.24952 0.96553 0.97587 0.94896 1.69927 1.10904 1.37390 1.34862 0.86650 0.77703 0.84571 0.79131 1.20306 1.21223 1.19988 1.22976 0.93393 0.90792 1.01608 0.95268 0.90441 0.91810 0.91916 0.87015 0.83081 0.87512 0.86784 0.86707 0.87964 0.89451 0.91326 0.93825 0.89146 0.94091 0.88793 0.95830 0.94225 0.92775 0.93437 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.11 60.07 0.55 0.76 16 2 N -0.52 -5.56 4.53 -234.69 -1.06 -6.63 16 3 C 0.14 1.40 5.37 -4.98 -0.03 1.37 16 4 C 0.19 2.14 6.84 -156.37 -1.07 1.07 16 5 N -0.38 -4.35 11.58 30.90 0.36 -4.00 16 6 O 0.07 0.74 11.08 18.12 0.20 0.94 16 7 C 0.21 1.90 7.97 -13.05 -0.10 1.80 16 8 C -0.08 -0.43 6.33 -91.77 -0.58 -1.01 16 9 C -0.16 -0.51 10.18 -26.73 -0.27 -0.79 16 10 C -0.15 -0.52 10.23 -26.73 -0.27 -0.79 16 11 N -0.46 -5.35 11.55 -9.87 -0.11 -5.46 16 12 C 0.08 0.81 2.73 -66.36 -0.18 0.63 16 13 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 14 C -0.11 -1.31 5.34 -24.87 -0.13 -1.44 16 15 C 0.03 0.41 4.93 -1.90 -0.01 0.40 16 16 N -0.51 -7.21 5.24 -230.45 -1.21 -8.42 16 17 C 0.05 0.83 4.38 -3.82 -0.02 0.81 16 18 C 0.01 0.17 2.42 -93.41 -0.23 -0.05 16 19 H 0.11 2.05 8.14 -51.93 -0.42 1.62 16 20 C 0.25 5.14 10.86 -20.76 -0.23 4.91 16 21 N -0.48 -10.50 17.69 42.15 0.75 -9.75 16 22 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 23 C -0.53 -14.12 8.60 -34.44 -0.30 -14.42 16 24 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 25 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 26 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 27 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 30 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 31 C 0.04 0.47 5.74 -2.76 -0.02 0.46 16 32 H 0.03 0.26 8.10 -51.93 -0.42 -0.16 16 33 H 0.08 0.71 6.44 -51.93 -0.33 0.38 16 34 H 0.06 0.68 6.97 -51.93 -0.36 0.32 16 35 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 36 H 0.11 1.04 6.35 -51.93 -0.33 0.71 16 37 H 0.15 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.11 0.37 8.00 -51.93 -0.42 -0.05 16 39 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 1.07 7.50 -51.93 -0.39 0.68 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.04 0.64 7.81 -51.93 -0.41 0.23 16 45 H 0.09 1.48 5.73 -51.93 -0.30 1.18 16 46 H 0.04 0.63 7.83 -51.93 -0.41 0.22 16 47 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 48 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 50 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 51 H 0.05 0.50 7.77 -51.93 -0.40 0.10 16 52 H 0.09 1.11 6.67 -51.93 -0.35 0.76 16 LS Contribution 421.24 15.07 6.35 6.35 Total: -1.00 -32.07 421.24 -10.41 -42.48 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -8.29 Total: -3.02 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -3.10 Total: -4.04 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.54 Total: -59.18 kcal Atomic # 8 Polarization: 0.74 SS G_CDS: 0.20 Total: 0.94 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -32.07 -10.41 -42.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221796333.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.153 kcal (2) G-P(sol) polarization free energy of solvation -32.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds