Wall clock time and date at job start Tue Mar 31 2020 06:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47123 * 2 1 4 4 C 1.36219 * 126.50297 * 264.97448 * 3 2 1 5 5 C 1.35546 * 107.10242 * 180.02562 * 4 3 2 6 6 N 1.33139 * 108.45015 * 359.77559 * 5 4 3 7 7 C 1.31909 * 109.21802 * 0.37418 * 6 5 4 8 8 C 1.46475 * 125.88603 * 179.89066 * 7 6 5 9 9 C 1.35288 * 119.99686 * 39.77742 * 8 7 6 10 10 C 1.46121 * 120.00080 * 7.72581 * 9 8 7 11 11 O 1.21642 * 119.99618 * 7.41971 * 10 9 8 12 12 O 1.34935 * 120.00094 * 187.41815 * 10 9 8 13 13 C 1.42896 * 116.99927 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.47036 * 180.02562 * 13 12 10 15 15 O 1.21288 * 120.00215 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99911 * 179.97438 * 14 13 12 17 17 C 1.46502 * 120.00010 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47592 * 89.99889 * 17 16 14 19 19 H 1.07998 * 119.99433 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00432 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99842 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00028 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47199 * 0.02562 * 22 20 18 24 24 H 1.48510 * 109.46929 * 120.00407 * 22 20 18 25 25 H 1.48500 * 109.47452 * 240.00164 * 22 20 18 26 26 C 1.46495 * 120.00255 * 359.97438 * 16 14 13 27 27 C 1.53008 * 109.47048 * 90.00086 * 26 16 14 28 28 C 1.47196 * 109.47314 * 180.02562 * 27 26 16 29 29 N 9.98269 * 65.24682 * 356.74182 * 2 1 3 30 30 H 1.08997 * 109.47543 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47102 * 300.00297 * 1 2 3 32 32 H 1.09000 * 109.47585 * 59.99747 * 1 2 3 33 33 H 1.09006 * 109.47102 * 239.99703 * 2 1 3 34 34 H 1.08999 * 109.47120 * 120.00008 * 2 1 3 35 35 H 1.07998 * 126.44795 * 0.02562 * 4 3 2 36 36 H 1.08000 * 125.77490 * 180.02562 * 5 4 3 37 37 H 1.07996 * 120.00436 * 219.77765 * 8 7 6 38 38 H 1.07996 * 119.99885 * 187.72402 * 9 8 7 39 39 H 1.08999 * 109.47520 * 299.99974 * 13 12 10 40 40 H 1.08998 * 109.47199 * 60.00538 * 13 12 10 41 41 H 1.09000 * 109.47703 * 210.00496 * 17 16 14 42 42 H 1.09012 * 109.47113 * 329.99921 * 17 16 14 43 43 H 0.97001 * 119.99577 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.47184 * 209.99716 * 26 16 14 45 45 H 1.09000 * 109.47404 * 330.00192 * 26 16 14 46 46 H 1.09004 * 109.46833 * 299.99993 * 27 26 16 47 47 H 1.09000 * 109.46932 * 59.99817 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3788 2.1132 -1.0908 5 6 2.7683 3.3315 -0.6422 6 7 2.6467 3.3511 0.6835 7 6 2.1994 2.1807 1.0958 8 6 1.9358 1.8037 2.4864 9 6 1.3688 2.6939 3.3328 10 6 0.8654 3.9676 2.8236 11 8 0.8319 4.1730 1.6251 12 8 0.4376 4.9160 3.6828 13 6 -0.0411 6.1371 3.1155 14 6 -0.4718 7.0687 4.2189 15 8 -0.3786 6.7211 5.3771 16 7 -0.9606 8.2883 3.9187 17 6 -1.3789 9.1942 4.9914 18 6 -0.2094 10.0449 5.4151 19 1 0.7495 9.9232 4.9332 20 6 -0.3637 10.9793 6.4172 21 7 -1.5314 11.1278 7.0036 22 14 1.0863 12.0332 6.9428 23 1 2.2787 11.6734 6.1342 24 1 0.7591 13.4662 6.7311 25 1 1.3735 11.7983 8.3807 26 6 -1.0727 8.7085 2.5198 27 6 -2.4447 8.3063 1.9748 28 6 -2.5572 8.7279 0.5690 29 7 -2.6499 9.0508 -0.5152 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.3582 1.7846 -2.1193 36 1 3.1146 4.1495 -1.2566 37 1 2.1941 0.8151 2.8362 38 1 1.2882 2.4631 4.3847 39 1 0.7546 6.6048 2.5355 40 1 -0.8899 5.9272 2.4647 41 1 -2.1835 9.8358 4.6322 42 1 -1.7314 8.6114 5.8424 43 1 -1.6399 11.7849 7.7088 44 1 -0.9592 9.7906 2.4553 45 1 -0.2924 8.2256 1.9316 46 1 -2.5583 7.2241 2.0393 47 1 -3.2251 8.7892 2.5629 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000222316992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:27 Heat of formation + Delta-G solvation = 14.947336 kcal Electronic energy + Delta-G solvation = -31511.142722 eV Core-core repulsion = 27083.458961 eV Total energy + Delta-G solvation = -4427.683761 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.163 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.15119 -40.38551 -39.04286 -36.90405 -36.41786 -35.28684 -35.20030 -33.90041 -32.89894 -30.85682 -30.47949 -29.59714 -28.70758 -26.76910 -24.73599 -24.08583 -23.98484 -22.65967 -21.57383 -21.08790 -19.28959 -18.70479 -18.17898 -17.65663 -17.16132 -16.52896 -16.37671 -16.33021 -15.97232 -15.58564 -15.33335 -15.01448 -14.70282 -14.47270 -14.32072 -14.23016 -13.93849 -13.64905 -13.58842 -13.37362 -13.08154 -12.91740 -12.69053 -12.57055 -12.44370 -12.42377 -12.12223 -11.99559 -11.85254 -11.72535 -11.28703 -10.99055 -10.89781 -10.66155 -10.59836 -10.43949 -10.30429 -10.18016 -9.95579 -9.68770 -9.55226 -9.04283 -8.46620 -8.20271 -7.89290 -6.08198 -4.12581 0.50634 1.94905 2.46109 2.61456 2.77509 2.85291 2.99933 3.21342 3.25973 3.30295 3.38531 3.43115 3.70783 4.07300 4.17165 4.19848 4.41818 4.43491 4.52064 4.66310 4.78242 4.90832 5.00088 5.06425 5.07360 5.10247 5.11647 5.23884 5.27438 5.29306 5.34672 5.45578 5.51415 5.55442 5.60442 5.81840 5.84755 6.07737 6.09411 6.51073 6.63652 6.90341 6.93946 7.32420 7.40343 7.60647 7.87611 7.93389 7.99731 8.16110 8.19013 8.79704 8.95191 9.53043 11.00037 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.011550 B = 0.002316 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.657494 B =12089.189371 C =13237.044375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.100 3.900 3 N -0.446 5.446 4 C -0.050 4.050 5 C -0.021 4.021 6 N -0.422 5.422 7 C 0.201 3.799 8 C -0.003 4.003 9 C -0.136 4.136 10 C 0.480 3.520 11 O -0.471 6.471 12 O -0.326 6.326 13 C 0.050 3.950 14 C 0.510 3.490 15 O -0.511 6.511 16 N -0.593 5.593 17 C 0.246 3.754 18 C -0.529 4.529 19 H 0.060 0.940 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.113 3.887 27 C -0.051 4.051 28 C 0.217 3.783 29 N -0.444 5.444 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.172 0.828 36 H 0.168 0.832 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.038 0.962 42 H 0.048 0.952 43 H 0.263 0.737 44 H 0.099 0.901 45 H 0.076 0.924 46 H 0.105 0.895 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.694 -24.353 -14.236 28.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.128 5.128 4 C -0.185 4.185 5 C -0.174 4.174 6 N -0.139 5.139 7 C -0.055 4.055 8 C -0.023 4.023 9 C -0.158 4.158 10 C 0.324 3.676 11 O -0.358 6.358 12 O -0.241 6.241 13 C -0.028 4.028 14 C 0.295 3.705 15 O -0.385 6.385 16 N -0.326 5.326 17 C 0.127 3.873 18 C -0.568 4.568 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.532 5.532 22 Si 0.725 3.275 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.013 4.013 27 C -0.092 4.092 28 C -0.101 4.101 29 N -0.121 5.121 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.190 0.810 36 H 0.185 0.815 37 H 0.168 0.832 38 H 0.174 0.826 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.117 0.883 45 H 0.094 0.906 46 H 0.123 0.877 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.612 -23.344 -14.924 27.941 hybrid contribution 0.514 0.002 -0.093 0.522 sum 4.126 -23.342 -15.017 28.060 Atomic orbital electron populations 1.22162 0.93831 1.03144 1.03653 1.21869 0.95920 0.79931 1.04511 1.45624 1.48036 1.12269 1.06906 1.22782 1.08736 0.94517 0.92494 1.22304 1.06627 0.96899 0.91527 1.70458 1.14840 1.16816 1.11809 1.21371 1.08084 0.87389 0.88675 1.21232 0.94484 0.98797 0.87786 1.22414 1.00671 0.91455 1.01249 1.21286 0.76442 0.84917 0.85003 1.90995 1.49491 1.79297 1.15981 1.86236 1.73764 1.24515 1.39596 1.22490 1.00700 0.83660 0.95935 1.19802 0.79101 0.82282 0.89329 1.90729 1.52620 1.74719 1.20430 1.48144 1.62645 1.14905 1.06922 1.19413 0.95622 0.87486 0.84738 1.21457 0.96870 1.18842 1.19581 0.92203 1.24913 0.96010 0.97195 0.95869 1.69930 1.22875 1.35168 1.25275 0.86450 0.82596 0.79793 0.78647 1.19726 1.21003 1.20861 1.21384 0.93703 1.03068 0.83146 1.19894 1.02331 1.03343 0.83673 1.29009 0.93137 0.93128 0.94814 1.81163 1.08713 1.09379 1.12829 0.90448 0.91564 0.91756 0.88899 0.89008 0.81034 0.81522 0.83196 0.82632 0.88812 0.89403 0.94370 0.93362 0.92710 0.88286 0.90569 0.87713 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 10.24 37.15 0.38 -0.42 16 2 C 0.10 0.45 6.64 -4.05 -0.03 0.43 16 3 N -0.45 -3.91 2.78 -114.57 -0.32 -4.23 16 4 C -0.05 -0.46 11.57 -16.56 -0.19 -0.65 16 5 C -0.02 -0.25 11.84 -17.95 -0.21 -0.46 16 6 N -0.42 -6.08 8.22 -11.42 -0.09 -6.17 16 7 C 0.20 2.30 6.26 -154.52 -0.97 1.33 16 8 C 0.00 -0.03 9.73 -37.32 -0.36 -0.39 16 9 C -0.14 -1.39 10.20 -37.47 -0.38 -1.78 16 10 C 0.48 6.95 7.65 33.89 0.26 7.21 16 11 O -0.47 -7.63 12.22 -19.37 -0.24 -7.87 16 12 O -0.33 -5.35 9.66 -47.90 -0.46 -5.81 16 13 C 0.05 0.78 4.41 36.01 0.16 0.94 16 14 C 0.51 9.97 7.75 -10.99 -0.09 9.89 16 15 O -0.51 -12.39 16.08 -14.36 -0.23 -12.62 16 16 N -0.59 -11.14 2.46 -175.05 -0.43 -11.57 16 17 C 0.25 5.84 5.16 -5.19 -0.03 5.81 16 18 C -0.53 -14.22 9.39 -34.44 -0.32 -14.54 16 19 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 22 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.11 1.58 5.17 -4.04 -0.02 1.56 16 27 C -0.05 -0.57 6.03 -29.52 -0.18 -0.74 16 28 C 0.22 2.80 15.43 -20.79 -0.32 2.48 16 29 N -0.44 -6.87 18.53 42.12 0.78 -6.09 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.09 0.25 7.89 -51.93 -0.41 -0.16 16 35 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.15 0.63 7.97 -52.49 -0.42 0.21 16 38 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.09 1.40 7.38 -51.93 -0.38 1.02 16 40 H 0.09 1.14 7.17 -51.93 -0.37 0.77 16 41 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 42 H 0.05 1.30 7.42 -51.92 -0.39 0.92 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.10 1.44 8.07 -51.93 -0.42 1.02 16 45 H 0.08 0.94 6.44 -51.93 -0.33 0.60 16 46 H 0.10 0.98 7.22 -51.93 -0.37 0.61 16 47 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 415.65 15.07 6.26 6.26 Total: -1.00 -38.61 415.65 -7.85 -46.47 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -6.44 Total: -2.26 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: -2.40 Total: 12.28 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.67 Total: -52.86 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.93 Total: -26.30 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -38.61 -7.85 -46.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222316992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.412 kcal (2) G-P(sol) polarization free energy of solvation -38.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds