Wall clock time and date at job start Tue Mar 31 2020 06:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47123 * 2 1 4 4 C 1.36219 * 126.50297 * 264.97448 * 3 2 1 5 5 C 1.35546 * 107.10242 * 180.02562 * 4 3 2 6 6 N 1.33139 * 108.45015 * 359.77559 * 5 4 3 7 7 C 1.31909 * 109.21802 * 0.37418 * 6 5 4 8 8 C 1.46475 * 125.88603 * 179.89066 * 7 6 5 9 9 C 1.35288 * 119.99686 * 39.77742 * 8 7 6 10 10 C 1.46121 * 120.00080 * 7.72581 * 9 8 7 11 11 O 1.21642 * 119.99618 * 7.41971 * 10 9 8 12 12 O 1.34935 * 120.00094 * 187.41815 * 10 9 8 13 13 C 1.42896 * 116.99927 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.47036 * 180.02562 * 13 12 10 15 15 O 1.21288 * 120.00215 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99911 * 179.97438 * 14 13 12 17 17 C 1.46502 * 120.00010 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47592 * 89.99889 * 17 16 14 19 19 H 1.07998 * 119.99433 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00432 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99842 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00028 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47199 * 0.02562 * 22 20 18 24 24 H 1.48510 * 109.46929 * 120.00407 * 22 20 18 25 25 H 1.48500 * 109.47452 * 240.00164 * 22 20 18 26 26 C 1.46495 * 120.00255 * 359.97438 * 16 14 13 27 27 C 1.53008 * 109.47048 * 90.00086 * 26 16 14 28 28 C 1.47196 * 109.47314 * 180.02562 * 27 26 16 29 29 N 9.98269 * 65.24682 * 356.74182 * 2 1 3 30 30 H 1.08997 * 109.47543 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47102 * 300.00297 * 1 2 3 32 32 H 1.09000 * 109.47585 * 59.99747 * 1 2 3 33 33 H 1.09006 * 109.47102 * 239.99703 * 2 1 3 34 34 H 1.08999 * 109.47120 * 120.00008 * 2 1 3 35 35 H 1.07998 * 126.44795 * 0.02562 * 4 3 2 36 36 H 1.08000 * 125.77490 * 180.02562 * 5 4 3 37 37 H 1.07996 * 120.00436 * 219.77765 * 8 7 6 38 38 H 1.07996 * 119.99885 * 187.72402 * 9 8 7 39 39 H 1.08999 * 109.47520 * 299.99974 * 13 12 10 40 40 H 1.08998 * 109.47199 * 60.00538 * 13 12 10 41 41 H 1.09000 * 109.47703 * 210.00496 * 17 16 14 42 42 H 1.09012 * 109.47113 * 329.99921 * 17 16 14 43 43 H 0.97001 * 119.99577 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.47184 * 209.99716 * 26 16 14 45 45 H 1.09000 * 109.47404 * 330.00192 * 26 16 14 46 46 H 1.09004 * 109.46833 * 299.99993 * 27 26 16 47 47 H 1.09000 * 109.46932 * 59.99817 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3788 2.1132 -1.0908 5 6 2.7683 3.3315 -0.6422 6 7 2.6467 3.3511 0.6835 7 6 2.1994 2.1807 1.0958 8 6 1.9358 1.8037 2.4864 9 6 1.3688 2.6939 3.3328 10 6 0.8654 3.9676 2.8236 11 8 0.8319 4.1730 1.6251 12 8 0.4376 4.9160 3.6828 13 6 -0.0411 6.1371 3.1155 14 6 -0.4718 7.0687 4.2189 15 8 -0.3786 6.7211 5.3771 16 7 -0.9606 8.2883 3.9187 17 6 -1.3789 9.1942 4.9914 18 6 -0.2094 10.0449 5.4151 19 1 0.7495 9.9232 4.9332 20 6 -0.3637 10.9793 6.4172 21 7 -1.5314 11.1278 7.0036 22 14 1.0863 12.0332 6.9428 23 1 2.2787 11.6734 6.1342 24 1 0.7591 13.4662 6.7311 25 1 1.3735 11.7983 8.3807 26 6 -1.0727 8.7085 2.5198 27 6 -2.4447 8.3063 1.9748 28 6 -2.5572 8.7279 0.5690 29 7 -2.6499 9.0508 -0.5152 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.3582 1.7846 -2.1193 36 1 3.1146 4.1495 -1.2566 37 1 2.1941 0.8151 2.8362 38 1 1.2882 2.4631 4.3847 39 1 0.7546 6.6048 2.5355 40 1 -0.8899 5.9272 2.4647 41 1 -2.1835 9.8358 4.6322 42 1 -1.7314 8.6114 5.8424 43 1 -1.6399 11.7849 7.7088 44 1 -0.9592 9.7906 2.4553 45 1 -0.2924 8.2256 1.9316 46 1 -2.5583 7.2241 2.0393 47 1 -3.2251 8.7892 2.5629 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222316992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:26 Heat of formation + Delta-G solvation = -7.966377 kcal Electronic energy + Delta-G solvation = -31512.136335 eV Core-core repulsion = 27083.458961 eV Total energy + Delta-G solvation = -4428.677374 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.163 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.87498 -41.59221 -40.48853 -38.10367 -37.58212 -36.71519 -35.82741 -34.88549 -34.68501 -32.24504 -31.07062 -30.86849 -29.68424 -28.42504 -25.69187 -25.38271 -24.67595 -24.22623 -22.44580 -21.83965 -20.40924 -19.99036 -18.96457 -18.90014 -18.39686 -18.11082 -17.72524 -17.59170 -17.19851 -16.57844 -16.28534 -16.06848 -15.86628 -15.75005 -15.56808 -14.95646 -14.89609 -14.65217 -14.51197 -14.38456 -14.29128 -13.99011 -13.77820 -13.67712 -13.61467 -13.52799 -13.24318 -13.10705 -12.97519 -12.94529 -12.73677 -12.53809 -12.20751 -12.19039 -12.01750 -11.67936 -11.61295 -11.55345 -11.10217 -10.74046 -10.67846 -10.58447 -10.33244 -9.57840 -8.96887 -8.18344 -6.29917 -0.26245 1.21382 1.39810 1.41350 1.44356 1.53619 1.58377 1.79592 1.80344 1.85697 2.07533 2.37433 2.46114 2.48343 3.05010 3.14126 3.47964 3.57158 3.82488 3.82657 3.91512 3.99559 4.04310 4.09128 4.11581 4.15440 4.38944 4.41789 4.50303 4.54162 4.64185 4.77173 4.80935 4.83505 4.90307 4.99146 5.03612 5.17467 5.21372 5.31897 5.41092 5.46803 5.57590 5.83959 5.89504 6.11663 6.29906 6.54040 6.59091 6.78824 6.87827 7.23284 7.25915 7.42617 8.88902 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.011550 B = 0.002316 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.657494 B =12089.189371 C =13237.044375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.092 3.908 3 N -0.440 5.440 4 C -0.033 4.033 5 C -0.062 4.062 6 N -0.473 5.473 7 C 0.176 3.824 8 C 0.023 3.977 9 C -0.162 4.162 10 C 0.475 3.525 11 O -0.494 6.494 12 O -0.347 6.347 13 C 0.062 3.938 14 C 0.508 3.492 15 O -0.567 6.567 16 N -0.590 5.590 17 C 0.260 3.740 18 C -0.542 4.542 19 H 0.052 0.948 20 C 0.013 3.987 21 N -0.923 5.923 22 Si 0.957 3.043 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.283 1.283 26 C 0.109 3.891 27 C -0.038 4.038 28 C 0.245 3.755 29 N -0.486 5.486 30 H 0.102 0.898 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.207 0.793 36 H 0.168 0.832 37 H 0.201 0.799 38 H 0.181 0.819 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.044 0.956 42 H 0.009 0.991 43 H 0.266 0.734 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.131 0.869 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.312 -26.847 -15.616 31.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.028 4.028 3 N -0.121 5.121 4 C -0.170 4.170 5 C -0.214 4.214 6 N -0.191 5.191 7 C -0.080 4.080 8 C 0.004 3.996 9 C -0.184 4.184 10 C 0.320 3.680 11 O -0.382 6.382 12 O -0.264 6.264 13 C -0.016 4.016 14 C 0.295 3.705 15 O -0.445 6.445 16 N -0.322 5.322 17 C 0.139 3.861 18 C -0.580 4.580 19 H 0.070 0.930 20 C -0.186 4.186 21 N -0.563 5.563 22 Si 0.783 3.217 23 H -0.195 1.195 24 H -0.198 1.198 25 H -0.209 1.209 26 C -0.015 4.015 27 C -0.079 4.079 28 C -0.073 4.073 29 N -0.164 5.164 30 H 0.120 0.880 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.224 0.776 36 H 0.185 0.815 37 H 0.218 0.782 38 H 0.198 0.802 39 H 0.119 0.881 40 H 0.136 0.864 41 H 0.061 0.939 42 H 0.027 0.973 43 H 0.075 0.925 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.149 0.851 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.220 -25.853 -16.357 30.883 hybrid contribution 0.339 0.691 0.236 0.805 sum 4.559 -25.163 -16.121 30.229 Atomic orbital electron populations 1.22139 0.94051 1.04240 1.01977 1.22277 0.95631 0.77843 1.07051 1.45895 1.46825 1.13475 1.05948 1.23268 1.06277 0.93479 0.93965 1.22580 1.08796 0.98640 0.91372 1.70348 1.16587 1.18971 1.13167 1.21802 1.08528 0.87376 0.90326 1.21852 0.91493 1.00135 0.86149 1.22598 1.02940 0.89948 1.02868 1.22091 0.75762 0.85453 0.84704 1.90985 1.50624 1.79810 1.16749 1.86245 1.74324 1.24934 1.40848 1.22342 1.01959 0.83202 0.94087 1.20466 0.77911 0.82573 0.89547 1.90696 1.54944 1.75942 1.22952 1.47991 1.62035 1.14198 1.07965 1.18923 0.94794 0.87191 0.85150 1.21756 0.97369 1.19224 1.19686 0.92993 1.25692 0.98415 0.98521 0.96015 1.70021 1.24529 1.35943 1.25836 0.85515 0.79591 0.78654 0.77941 1.19502 1.19759 1.20920 1.21594 0.96223 1.03146 0.80584 1.19832 1.00663 1.04997 0.82455 1.29074 0.91836 0.91787 0.94583 1.81202 1.10068 1.10930 1.14222 0.87955 0.93383 0.93256 0.86425 0.86535 0.77631 0.81462 0.78195 0.80184 0.88079 0.86427 0.93853 0.97256 0.92484 0.88756 0.88437 0.85147 0.85242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.24 71.98 0.74 -0.37 16 2 C 0.09 0.49 6.64 86.38 0.57 1.06 16 3 N -0.44 -6.64 2.78 -516.38 -1.44 -8.07 16 4 C -0.03 -0.55 11.57 83.39 0.96 0.42 16 5 C -0.06 -1.48 11.84 83.87 0.99 -0.49 16 6 N -0.47 -13.61 8.22 -190.06 -1.56 -15.17 16 7 C 0.18 3.76 6.26 135.86 0.85 4.62 16 8 C 0.02 0.34 9.73 23.74 0.23 0.57 16 9 C -0.16 -3.11 10.20 23.64 0.24 -2.87 16 10 C 0.47 13.65 7.65 69.87 0.53 14.18 16 11 O -0.49 -15.99 12.22 19.37 0.24 -15.75 16 12 O -0.35 -11.48 9.66 -52.05 -0.50 -11.98 16 13 C 0.06 1.90 4.41 71.24 0.31 2.22 16 14 C 0.51 20.16 7.75 87.66 0.68 20.84 16 15 O -0.57 -28.60 16.08 15.98 0.26 -28.34 16 16 N -0.59 -22.30 2.46 -826.13 -2.03 -24.33 16 17 C 0.26 12.68 5.16 85.63 0.44 13.12 16 18 C -0.54 -29.68 9.39 25.60 0.24 -29.44 16 19 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 20 C 0.01 0.72 5.46 84.65 0.46 1.18 16 21 N -0.92 -53.59 13.29 21.45 0.28 -53.30 16 22 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 26 C 0.11 2.92 5.17 86.38 0.45 3.37 16 27 C -0.04 -0.78 6.03 28.79 0.17 -0.61 16 28 C 0.24 5.91 15.43 89.45 1.38 7.29 16 29 N -0.49 -14.59 18.53 19.99 0.37 -14.22 16 30 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.12 0.10 8.14 -2.38 -0.02 0.08 16 34 H 0.12 0.08 7.89 -2.39 -0.02 0.06 16 35 H 0.21 1.71 8.06 -2.91 -0.02 1.68 16 36 H 0.17 3.57 8.06 -2.91 -0.02 3.54 16 37 H 0.20 0.75 7.97 -2.91 -0.02 0.73 16 38 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.10 2.97 7.38 -2.39 -0.02 2.96 16 40 H 0.12 2.88 7.17 -2.39 -0.02 2.86 16 41 H 0.04 2.06 8.07 -2.39 -0.02 2.04 16 42 H 0.01 0.53 7.42 -2.38 -0.02 0.51 16 43 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 44 H 0.09 2.66 8.07 -2.39 -0.02 2.64 16 45 H 0.10 2.23 6.44 -2.39 -0.02 2.22 16 46 H 0.13 2.07 7.22 -2.38 -0.02 2.06 16 47 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -88.97 415.65 7.90 -81.07 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.99 Total: 8.71 kcal Atomic # 6 Polarization: 25.83 SS G_CDS: 9.26 Total: 35.09 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -4.37 Total: -115.11 kcal Atomic # 8 Polarization: -56.07 SS G_CDS: -0.01 Total: -56.08 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -88.97 7.90 -81.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222316992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.100 kcal (2) G-P(sol) polarization free energy of solvation -88.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds