Wall clock time and date at job start Tue Mar 31 2020 07:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30719 * 1 3 3 Si 1.86798 * 119.99442 * 2 1 4 4 H 1.48504 * 109.46750 * 185.00515 * 3 2 1 5 5 H 1.48499 * 109.47719 * 305.00542 * 3 2 1 6 6 H 1.48501 * 109.47171 * 65.01178 * 3 2 1 7 7 C 1.39988 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99829 * 187.28423 * 7 2 1 9 9 C 1.40233 * 120.00356 * 7.27376 * 7 2 1 10 10 O 1.21966 * 119.99735 * 8.76576 * 9 7 2 11 11 N 1.34777 * 120.00427 * 188.76652 * 9 7 2 12 12 C 1.44521 * 120.88843 * 54.57123 * 11 9 7 13 13 C 1.53298 * 111.95930 * 179.97438 * 12 11 9 14 14 S 1.81998 * 104.29173 * 359.75608 * 13 12 11 15 15 C 1.35376 * 120.89142 * 234.55476 * 11 9 7 16 16 C 1.38700 * 125.30094 * 0.02562 * 15 11 9 17 17 C 1.40708 * 120.00279 * 9.87477 * 16 15 11 18 18 N 1.33107 * 126.67016 * 230.30235 * 17 16 15 19 19 C 1.34426 * 105.46873 * 179.97438 * 18 17 16 20 20 C 1.48367 * 126.22282 * 180.02562 * 19 18 17 21 21 C 1.39354 * 120.13731 * 354.72656 * 20 19 18 22 22 C 1.37979 * 119.90843 * 180.02562 * 21 20 19 23 23 C 1.38375 * 120.17494 * 359.97438 * 22 21 20 24 24 C 1.38229 * 120.27701 * 0.02562 * 23 22 21 25 25 C 1.38312 * 120.09609 * 359.97438 * 24 23 22 26 26 F 1.35092 * 120.09646 * 180.02562 * 25 24 23 27 27 N 1.31240 * 107.55056 * 0.25608 * 19 18 17 28 28 O 1.21267 * 110.51990 * 359.54358 * 27 19 18 29 29 H 0.96995 * 120.00883 * 359.97438 * 1 2 3 30 30 H 1.08993 * 108.99860 * 300.63873 * 12 11 9 31 31 H 1.08999 * 108.99030 * 59.33169 * 12 11 9 32 32 H 1.09010 * 110.46748 * 118.70452 * 13 12 11 33 33 H 1.09004 * 110.47411 * 241.17021 * 13 12 11 34 34 H 1.08004 * 120.00451 * 189.87511 * 16 15 11 35 35 H 1.07999 * 120.04237 * 0.02562 * 21 20 19 36 36 H 1.07995 * 119.90878 * 180.02562 * 22 21 20 37 37 H 1.07997 * 119.86089 * 180.27831 * 23 22 21 38 38 H 1.07997 * 119.95549 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 3.6964 1.3492 -0.1222 5 1 1.7930 2.4481 -1.1467 6 1 1.9763 2.3422 1.2690 7 6 2.0072 -1.2123 -0.0005 8 1 3.0807 -1.2161 0.1181 9 6 1.3146 -2.4219 -0.1548 10 8 0.1306 -2.4136 -0.4475 11 7 1.9572 -3.5936 0.0202 12 6 2.6766 -3.8697 1.2429 13 6 3.3280 -5.2573 1.2238 14 16 2.8684 -5.9472 -0.3965 15 6 1.9459 -4.5434 -0.9443 16 6 1.3050 -4.4339 -2.1695 17 6 0.7724 -3.1969 -2.5769 18 7 -0.4582 -2.9723 -3.0316 19 6 -0.5093 -1.6544 -3.2918 20 6 -1.6785 -0.9099 -3.8211 21 6 -2.8312 -1.5952 -4.1999 22 6 -3.9155 -0.8982 -4.6920 23 6 -3.8615 0.4795 -4.8099 24 6 -2.7218 1.1667 -4.4365 25 6 -1.6282 0.4794 -3.9417 26 9 -0.5146 1.1511 -3.5762 27 7 0.6646 -1.1470 -2.9971 28 8 1.4086 -2.0100 -2.5820 29 1 -0.4851 0.8399 0.0004 30 1 3.4521 -3.1156 1.3764 31 1 1.9835 -3.8150 2.0823 32 1 4.4111 -5.1712 1.3122 33 1 2.9291 -5.8769 2.0269 34 1 1.2146 -5.2982 -2.8108 35 1 -2.8758 -2.6704 -4.1083 36 1 -4.8091 -1.4292 -4.9852 37 1 -4.7148 1.0204 -5.1916 38 1 -2.6854 2.2420 -4.5303 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225243748.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:47 Heat of formation + Delta-G solvation = 61.671217 kcal Electronic energy + Delta-G solvation = -30898.162102 eV Core-core repulsion = 26558.245250 eV Total energy + Delta-G solvation = -4339.916852 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 361.068 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.34369 -43.91712 -39.46532 -38.59459 -35.58472 -34.56839 -33.45540 -32.69276 -31.13354 -30.46546 -29.84952 -28.80006 -26.90751 -24.33923 -23.96767 -23.01609 -22.41153 -21.63604 -20.72639 -19.07128 -17.78852 -17.28467 -16.93845 -16.44803 -16.25183 -15.94665 -15.63131 -15.51186 -15.22766 -15.06641 -14.50343 -14.21988 -14.02721 -13.59298 -13.40212 -13.18359 -12.79046 -12.71419 -12.41347 -12.33044 -12.17136 -11.71349 -11.65473 -11.47505 -11.36714 -11.08210 -11.02103 -10.88038 -10.81094 -10.62437 -10.40194 -10.37688 -9.71147 -9.31583 -8.92031 -8.57986 -8.16051 -7.92618 -7.80747 -6.77585 -6.56822 -5.16601 1.17755 1.44742 1.55720 1.84651 2.14232 2.93474 2.98408 3.08917 3.14094 3.50374 3.71774 3.97585 4.02737 4.11443 4.41556 4.51162 4.57112 4.64650 4.82450 4.91600 5.04997 5.21699 5.32342 5.41200 5.47969 5.69523 5.77000 5.84464 5.95391 6.17353 6.25690 6.34446 6.45225 6.55030 6.63233 6.71461 7.00954 7.04986 7.14805 7.34264 7.43952 7.73853 7.82892 8.56103 8.74850 9.49156 10.01784 10.23649 Molecular weight = 361.07amu Principal moments of inertia in cm(-1) A = 0.011922 B = 0.004651 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.101336 B = 6019.304245 C = 7770.507867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.094 3.906 3 Si 0.907 3.093 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.274 1.274 7 C -0.488 4.488 8 H 0.074 0.926 9 C 0.523 3.477 10 O -0.534 6.534 11 N -0.568 5.568 12 C 0.108 3.892 13 C -0.108 4.108 14 S -0.114 6.114 15 C 0.230 3.770 16 C -0.242 4.242 17 C 0.283 3.717 18 N -0.481 5.481 19 C 0.191 3.809 20 C -0.019 4.019 21 C -0.057 4.057 22 C -0.138 4.138 23 C -0.091 4.091 24 C -0.163 4.163 25 C 0.127 3.873 26 F -0.120 7.120 27 N -0.355 5.355 28 O 0.101 5.899 29 H 0.277 0.723 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.154 0.846 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.571 -3.545 -2.638 4.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.134 4.134 3 Si 0.730 3.270 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.199 1.199 7 C -0.522 4.522 8 H 0.092 0.908 9 C 0.339 3.661 10 O -0.417 6.417 11 N -0.289 5.289 12 C -0.016 4.016 13 C -0.258 4.258 14 S 0.124 5.876 15 C 0.005 3.995 16 C -0.281 4.281 17 C 0.069 3.931 18 N -0.216 5.216 19 C -0.079 4.079 20 C -0.022 4.022 21 C -0.077 4.077 22 C -0.156 4.156 23 C -0.110 4.110 24 C -0.182 4.182 25 C 0.106 3.894 26 F -0.098 7.098 27 N -0.059 5.059 28 O 0.034 5.966 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.172 0.828 35 H 0.159 0.841 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.120 -3.660 -3.269 4.909 hybrid contribution 0.479 1.903 1.111 2.255 sum 0.359 -1.757 -2.158 2.806 Atomic orbital electron populations 1.69935 1.07456 1.28652 1.27875 1.25698 0.94633 1.00839 0.92184 0.86276 0.80859 0.81186 0.78660 1.18215 1.19074 1.19938 1.20061 0.95293 0.90228 1.46572 0.90805 1.16704 0.86676 0.81050 0.81686 1.90801 1.15552 1.84924 1.50437 1.45665 1.51953 1.17937 1.13304 1.21338 0.97206 0.94850 0.88235 1.24342 1.05280 0.98429 0.97702 1.85978 1.61994 1.21718 1.17924 1.22626 0.95600 0.89183 0.92095 1.18283 1.18271 0.93529 0.98038 1.23719 0.86765 0.88561 0.94059 1.72230 1.15460 1.12650 1.21235 1.22831 0.93209 0.88690 1.03148 1.17540 0.92596 0.90258 1.01772 1.21115 0.90647 1.00999 0.94963 1.21068 0.98701 0.94207 1.01671 1.20988 0.97019 0.94323 0.98697 1.21002 0.93007 1.00648 1.03537 1.17730 0.84148 0.89037 0.98522 1.91581 1.49898 1.79668 1.88691 1.74748 1.03513 1.13048 1.14554 1.85578 1.37297 1.14458 1.59256 0.91217 0.89347 0.90258 0.86988 0.87274 0.82824 0.84111 0.85192 0.85225 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.91 11.81 55.55 0.66 -19.25 16 2 C 0.09 2.45 5.46 -17.37 -0.09 2.35 16 3 Si 0.91 19.91 29.56 -169.99 -5.03 14.89 16 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.49 -12.66 7.74 -38.18 -0.30 -12.96 16 8 H 0.07 1.80 7.60 -52.48 -0.40 1.40 16 9 C 0.52 13.66 3.90 -15.51 -0.06 13.60 16 10 O -0.53 -15.94 11.65 -16.67 -0.19 -16.13 16 11 N -0.57 -12.23 2.86 -119.15 -0.34 -12.57 16 12 C 0.11 1.74 6.46 -4.94 -0.03 1.71 16 13 C -0.11 -1.28 7.39 37.31 0.28 -1.00 16 14 S -0.11 -1.68 23.19 -107.50 -2.49 -4.18 16 15 C 0.23 4.62 6.96 -15.82 -0.11 4.51 16 16 C -0.24 -5.17 10.04 -38.48 -0.39 -5.56 16 17 C 0.28 7.00 4.67 -16.24 -0.08 6.93 16 18 N -0.48 -12.14 10.93 -11.59 -0.13 -12.27 16 19 C 0.19 4.82 7.33 -156.46 -1.15 3.67 16 20 C -0.02 -0.41 5.88 -104.82 -0.62 -1.03 16 21 C -0.06 -1.02 9.70 -39.26 -0.38 -1.40 16 22 C -0.14 -1.91 10.03 -39.63 -0.40 -2.30 16 23 C -0.09 -1.19 10.04 -39.53 -0.40 -1.59 16 24 C -0.16 -2.53 10.02 -39.56 -0.40 -2.93 16 25 C 0.13 2.57 7.28 -39.07 -0.28 2.28 16 26 F -0.12 -2.75 15.82 2.25 0.04 -2.71 16 27 N -0.35 -9.42 10.67 31.45 0.34 -9.08 16 28 O 0.10 2.67 8.00 -6.23 -0.05 2.62 16 29 H 0.28 7.26 8.29 -40.82 -0.34 6.93 16 30 H 0.09 1.35 7.68 -51.93 -0.40 0.95 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.11 1.03 8.14 -51.92 -0.42 0.61 16 33 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.15 2.82 8.06 -52.48 -0.42 2.39 16 35 H 0.14 2.45 7.87 -52.49 -0.41 2.03 16 36 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 346.83 15.07 5.23 5.23 Total: -1.00 -34.74 346.83 -9.68 -44.42 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -3.30 Total: 2.75 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -4.40 Total: 6.29 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.52 Total: -53.17 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.24 Total: -13.52 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.89 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.49 Total: -4.18 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.74 -9.68 -44.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225243748.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.094 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds