Wall clock time and date at job start Tue Mar 31 2020 07:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30719 * 1 3 3 Si 1.86798 * 119.99442 * 2 1 4 4 H 1.48504 * 109.46750 * 185.00515 * 3 2 1 5 5 H 1.48499 * 109.47719 * 305.00542 * 3 2 1 6 6 H 1.48501 * 109.47171 * 65.01178 * 3 2 1 7 7 C 1.39988 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99829 * 187.28423 * 7 2 1 9 9 C 1.40233 * 120.00356 * 7.27376 * 7 2 1 10 10 O 1.21966 * 119.99735 * 8.76576 * 9 7 2 11 11 N 1.34777 * 120.00427 * 188.76652 * 9 7 2 12 12 C 1.44521 * 120.88843 * 54.57123 * 11 9 7 13 13 C 1.53298 * 111.95930 * 179.97438 * 12 11 9 14 14 S 1.81998 * 104.29173 * 359.75608 * 13 12 11 15 15 C 1.35376 * 120.89142 * 234.55476 * 11 9 7 16 16 C 1.38700 * 125.30094 * 0.02562 * 15 11 9 17 17 C 1.40708 * 120.00279 * 9.87477 * 16 15 11 18 18 N 1.33107 * 126.67016 * 230.30235 * 17 16 15 19 19 C 1.34426 * 105.46873 * 179.97438 * 18 17 16 20 20 C 1.48367 * 126.22282 * 180.02562 * 19 18 17 21 21 C 1.39354 * 120.13731 * 354.72656 * 20 19 18 22 22 C 1.37979 * 119.90843 * 180.02562 * 21 20 19 23 23 C 1.38375 * 120.17494 * 359.97438 * 22 21 20 24 24 C 1.38229 * 120.27701 * 0.02562 * 23 22 21 25 25 C 1.38312 * 120.09609 * 359.97438 * 24 23 22 26 26 F 1.35092 * 120.09646 * 180.02562 * 25 24 23 27 27 N 1.31240 * 107.55056 * 0.25608 * 19 18 17 28 28 O 1.21267 * 110.51990 * 359.54358 * 27 19 18 29 29 H 0.96995 * 120.00883 * 359.97438 * 1 2 3 30 30 H 1.08993 * 108.99860 * 300.63873 * 12 11 9 31 31 H 1.08999 * 108.99030 * 59.33169 * 12 11 9 32 32 H 1.09010 * 110.46748 * 118.70452 * 13 12 11 33 33 H 1.09004 * 110.47411 * 241.17021 * 13 12 11 34 34 H 1.08004 * 120.00451 * 189.87511 * 16 15 11 35 35 H 1.07999 * 120.04237 * 0.02562 * 21 20 19 36 36 H 1.07995 * 119.90878 * 180.02562 * 22 21 20 37 37 H 1.07997 * 119.86089 * 180.27831 * 23 22 21 38 38 H 1.07997 * 119.95549 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 3.6964 1.3492 -0.1222 5 1 1.7930 2.4481 -1.1467 6 1 1.9763 2.3422 1.2690 7 6 2.0072 -1.2123 -0.0005 8 1 3.0807 -1.2161 0.1181 9 6 1.3146 -2.4219 -0.1548 10 8 0.1306 -2.4136 -0.4475 11 7 1.9572 -3.5936 0.0202 12 6 2.6766 -3.8697 1.2429 13 6 3.3280 -5.2573 1.2238 14 16 2.8684 -5.9472 -0.3965 15 6 1.9459 -4.5434 -0.9443 16 6 1.3050 -4.4339 -2.1695 17 6 0.7724 -3.1969 -2.5769 18 7 -0.4582 -2.9723 -3.0316 19 6 -0.5093 -1.6544 -3.2918 20 6 -1.6785 -0.9099 -3.8211 21 6 -2.8312 -1.5952 -4.1999 22 6 -3.9155 -0.8982 -4.6920 23 6 -3.8615 0.4795 -4.8099 24 6 -2.7218 1.1667 -4.4365 25 6 -1.6282 0.4794 -3.9417 26 9 -0.5146 1.1511 -3.5762 27 7 0.6646 -1.1470 -2.9971 28 8 1.4086 -2.0100 -2.5820 29 1 -0.4851 0.8399 0.0004 30 1 3.4521 -3.1156 1.3764 31 1 1.9835 -3.8150 2.0823 32 1 4.4111 -5.1712 1.3122 33 1 2.9291 -5.8769 2.0269 34 1 1.2146 -5.2982 -2.8108 35 1 -2.8758 -2.6704 -4.1083 36 1 -4.8091 -1.4292 -4.9852 37 1 -4.7148 1.0204 -5.1916 38 1 -2.6854 2.2420 -4.5303 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225243748.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:46 Heat of formation + Delta-G solvation = 38.511903 kcal Electronic energy + Delta-G solvation = -30899.166365 eV Core-core repulsion = 26558.245250 eV Total energy + Delta-G solvation = -4340.921115 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 361.068 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.92255 -45.75113 -41.18281 -39.89406 -37.42482 -36.33550 -35.14893 -34.59785 -32.54480 -31.79825 -31.26854 -30.53496 -28.78083 -25.99673 -25.52906 -24.38852 -23.89578 -23.22972 -22.36418 -20.80459 -19.40519 -18.95873 -18.46292 -18.14780 -17.98834 -17.59511 -17.15957 -16.88670 -16.72900 -16.64322 -16.26317 -15.77904 -15.33661 -15.26228 -14.79839 -14.70080 -14.23071 -14.13197 -13.89869 -13.85508 -13.59615 -13.33946 -13.21924 -13.05746 -12.96616 -12.83597 -12.74836 -12.47580 -12.28605 -12.18102 -12.15990 -11.71620 -11.57117 -11.18136 -10.70631 -10.09301 -9.89726 -9.52592 -9.20914 -8.61455 -8.24994 -7.20940 -0.22381 0.08601 0.16698 0.30455 0.94072 1.19411 1.24060 1.27573 1.40138 1.87847 1.98644 2.11904 2.35048 2.63373 2.69827 2.98025 3.20295 3.22074 3.46856 3.51005 3.85802 3.88432 4.04567 4.27817 4.36037 4.45218 4.56361 4.57115 4.65346 4.69212 4.86068 5.00697 5.02667 5.04874 5.09365 5.30074 5.31677 5.41663 5.52954 5.70191 5.80350 5.86243 6.12400 6.55520 6.86277 7.64913 8.05235 8.28423 Molecular weight = 361.07amu Principal moments of inertia in cm(-1) A = 0.011922 B = 0.004651 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.101336 B = 6019.304245 C = 7770.507867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.056 3.944 3 Si 0.965 3.035 4 H -0.243 1.243 5 H -0.283 1.283 6 H -0.253 1.253 7 C -0.504 4.504 8 H 0.084 0.916 9 C 0.524 3.476 10 O -0.579 6.579 11 N -0.582 5.582 12 C 0.097 3.903 13 C -0.097 4.097 14 S -0.062 6.062 15 C 0.221 3.779 16 C -0.281 4.281 17 C 0.281 3.719 18 N -0.506 5.506 19 C 0.188 3.812 20 C -0.069 4.069 21 C -0.069 4.069 22 C -0.119 4.119 23 C -0.066 4.066 24 C -0.156 4.156 25 C 0.089 3.911 26 F -0.148 7.148 27 N -0.386 5.386 28 O 0.073 5.927 29 H 0.275 0.725 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.177 0.823 35 H 0.133 0.867 36 H 0.176 0.824 37 H 0.186 0.814 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.307 -4.023 -2.241 4.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.168 4.168 3 Si 0.786 3.214 4 H -0.165 1.165 5 H -0.209 1.209 6 H -0.177 1.177 7 C -0.538 4.538 8 H 0.102 0.898 9 C 0.341 3.659 10 O -0.466 6.466 11 N -0.302 5.302 12 C -0.026 4.026 13 C -0.246 4.246 14 S 0.177 5.823 15 C -0.004 4.004 16 C -0.320 4.320 17 C 0.068 3.932 18 N -0.242 5.242 19 C -0.082 4.082 20 C -0.071 4.071 21 C -0.089 4.089 22 C -0.137 4.137 23 C -0.084 4.084 24 C -0.174 4.174 25 C 0.068 3.932 26 F -0.127 7.127 27 N -0.095 5.095 28 O 0.012 5.988 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.194 0.806 35 H 0.151 0.849 36 H 0.194 0.806 37 H 0.203 0.797 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.312 -4.206 -2.828 5.078 hybrid contribution 0.490 1.932 1.002 2.230 sum 0.178 -2.274 -1.827 2.922 Atomic orbital electron populations 1.70066 1.09206 1.29122 1.29563 1.26573 0.95130 1.04062 0.91033 0.85410 0.80301 0.77037 0.78688 1.16549 1.20895 1.17704 1.20341 0.95733 0.90789 1.46893 0.89781 1.16776 0.86196 0.82604 0.80370 1.90771 1.17585 1.86294 1.51904 1.45542 1.52096 1.17289 1.15232 1.21608 0.97243 0.98000 0.85790 1.24591 1.07454 0.95642 0.96871 1.85831 1.59663 1.17728 1.19094 1.23179 0.94495 0.91307 0.91411 1.18684 1.20414 0.93114 0.99765 1.24377 0.86756 0.89103 0.92955 1.72210 1.16047 1.13115 1.22806 1.23575 0.93961 0.88910 1.01751 1.17925 0.93072 0.91226 1.04905 1.21259 0.90931 1.00938 0.95776 1.21596 0.98364 0.94868 0.98852 1.21645 0.97198 0.94058 0.95543 1.21434 0.92012 1.02080 1.01880 1.18271 0.85017 0.88987 1.00894 1.91494 1.51715 1.80033 1.89439 1.74671 1.04426 1.13672 1.16715 1.85488 1.37825 1.15101 1.60357 0.91512 0.88523 0.90417 0.83147 0.83921 0.80607 0.84921 0.80626 0.79658 0.82023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -44.40 11.81 21.83 0.26 -44.15 16 2 C 0.06 3.02 5.46 85.28 0.47 3.49 16 3 Si 0.97 42.09 29.56 68.60 2.03 44.12 16 4 H -0.24 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 7 C -0.50 -27.10 7.74 23.18 0.18 -26.92 16 8 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.52 28.55 3.90 84.73 0.33 28.88 16 10 O -0.58 -36.59 11.65 15.46 0.18 -36.41 16 11 N -0.58 -25.32 2.86 -648.98 -1.86 -27.18 16 12 C 0.10 2.96 6.46 86.85 0.56 3.52 16 13 C -0.10 -1.89 7.39 72.08 0.53 -1.36 16 14 S -0.06 -1.65 23.19 -56.49 -1.31 -2.96 16 15 C 0.22 8.94 6.96 84.26 0.59 9.53 16 16 C -0.28 -12.54 10.04 22.98 0.23 -12.31 16 17 C 0.28 14.89 4.67 85.16 0.40 15.29 16 18 N -0.51 -27.55 10.93 -305.11 -3.34 -30.89 16 19 C 0.19 10.26 7.33 137.39 1.01 11.27 16 20 C -0.07 -3.14 5.88 -20.00 -0.12 -3.26 16 21 C -0.07 -2.49 9.70 22.48 0.22 -2.28 16 22 C -0.12 -2.93 10.03 22.24 0.22 -2.70 16 23 C -0.07 -1.45 10.04 22.30 0.22 -1.23 16 24 C -0.16 -4.58 10.02 22.29 0.22 -4.36 16 25 C 0.09 3.78 7.28 22.60 0.16 3.94 16 26 F -0.15 -7.28 15.82 44.97 0.71 -6.56 16 27 N -0.39 -22.14 10.67 -56.17 -0.60 -22.74 16 28 O 0.07 4.16 8.00 85.79 0.69 4.85 16 29 H 0.27 15.33 8.29 -92.71 -0.77 14.56 16 30 H 0.10 2.79 7.68 -2.39 -0.02 2.77 16 31 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.15 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.18 6.70 8.06 -2.91 -0.02 6.67 16 35 H 0.13 4.85 7.87 -2.91 -0.02 4.83 16 36 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.19 2.13 8.06 -2.91 -0.02 2.10 16 38 H 0.16 3.78 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -86.59 346.83 3.12 -83.46 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 1.14 Total: 16.95 kcal Atomic # 6 Polarization: 16.27 SS G_CDS: 5.23 Total: 21.50 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -5.54 Total: -124.94 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: 0.87 Total: -31.56 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 0.71 Total: -6.56 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -1.31 Total: -2.96 kcal Total: -86.59 3.12 -83.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225243748.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.977 kcal (2) G-P(sol) polarization free energy of solvation -86.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds