Wall clock time and date at job start Tue Mar 31 2020 07:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47041 * 2 1 4 4 O 1.42906 * 109.46787 * 240.00592 * 2 1 3 5 5 C 1.35910 * 117.00092 * 84.95978 * 4 2 1 6 6 C 1.38725 * 120.05133 * 174.28521 * 5 4 2 7 7 C 1.38141 * 119.95258 * 179.76414 * 6 5 4 8 8 C 1.38315 * 120.04910 * 0.47971 * 7 6 5 9 9 I 2.09492 * 119.95280 * 179.74859 * 8 7 6 10 10 C 1.38317 * 120.09750 * 359.77050 * 8 7 6 11 11 C 1.38149 * 120.04985 * 359.97438 * 10 8 7 12 12 C 1.50700 * 109.47697 * 120.00626 * 2 1 3 13 13 O 1.21284 * 120.00319 * 119.99418 * 12 2 1 14 14 N 1.34777 * 119.99419 * 299.99948 * 12 2 1 15 15 C 1.37100 * 119.99864 * 179.97438 * 14 12 2 16 16 H 1.08002 * 119.99528 * 0.02562 * 15 14 12 17 17 C 1.38951 * 120.00222 * 179.97438 * 15 14 12 18 18 N 1.31409 * 119.99789 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99834 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47341 * 90.00307 * 19 17 15 21 21 H 1.48501 * 109.47099 * 210.00073 * 19 17 15 22 22 H 1.48496 * 109.47292 * 329.99782 * 19 17 15 23 23 H 1.08995 * 109.47107 * 59.99321 * 1 2 3 24 24 H 1.09000 * 109.47041 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.46772 * 299.99496 * 1 2 3 26 26 H 1.08007 * 120.01977 * 359.97438 * 6 5 4 27 27 H 1.08000 * 119.97552 * 180.22765 * 7 6 5 28 28 H 1.08004 * 119.97498 * 179.97438 * 10 8 7 29 29 H 1.08002 * 120.02535 * 179.97438 * 11 10 8 30 30 H 0.97003 * 120.00373 * 359.97438 * 14 12 2 31 31 H 0.96998 * 119.99810 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.1116 0.0626 -2.3045 6 6 2.6774 -0.4940 -3.4423 7 6 2.7791 0.2546 -4.5988 8 6 2.3262 1.5613 -4.6202 9 53 2.4889 2.6962 -6.3735 10 6 1.7663 2.1200 -3.4855 11 6 1.6579 1.3734 -2.3281 12 6 2.0324 -0.7105 1.2303 13 8 2.7297 -1.6966 1.1190 14 7 1.7069 -0.2501 2.4545 15 6 2.1635 -0.8967 3.5738 16 1 2.7845 -1.7748 3.4746 17 6 1.8283 -0.4218 4.8359 18 7 1.0732 0.6469 4.9566 19 14 2.4512 -1.3025 6.3610 20 1 3.7596 -0.7279 6.7648 21 1 1.4734 -1.1313 7.4654 22 1 2.6156 -2.7484 6.0652 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 3.0352 -1.5129 -3.4247 27 1 3.2162 -0.1796 -5.4859 28 1 1.4137 3.1406 -3.5042 29 1 1.2211 1.8102 -1.4422 30 1 1.1495 0.5388 2.5436 31 1 0.8395 0.9786 5.8376 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225605277.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:36 Heat of formation + Delta-G solvation = -37.360912 kcal Electronic energy + Delta-G solvation = -17435.877091 eV Core-core repulsion = 14348.936469 eV Total energy + Delta-G solvation = -3086.940622 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 360.996 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.40388 -38.55510 -37.15437 -34.06343 -32.39853 -31.55599 -31.23301 -30.45921 -27.42838 -25.42115 -23.91831 -22.88098 -21.61391 -19.38900 -18.36942 -18.03980 -16.34901 -15.53416 -15.43240 -15.31840 -14.68775 -14.46142 -14.00393 -13.73011 -13.55193 -13.24073 -12.73070 -12.64792 -12.13502 -11.69604 -11.58092 -11.29701 -11.22517 -11.04599 -10.78024 -10.46423 -10.32764 -10.09163 -10.04165 -9.63792 -9.21150 -8.54715 -8.17236 -8.11312 -6.53881 -3.95473 1.04227 1.10674 1.15814 3.09448 3.11119 3.21627 3.29451 3.53652 3.69918 4.10945 4.59673 4.67962 4.78684 4.99763 5.06566 5.15014 5.25840 5.35436 5.42578 5.68390 5.74286 5.78366 5.97062 6.05394 6.12235 6.24009 6.32239 6.52611 7.43919 7.44614 7.90961 8.45143 9.04096 9.35824 9.86016 10.63402 Molecular weight = 361.00amu Principal moments of inertia in cm(-1) A = 0.043825 B = 0.002096 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.756611 B =13354.281432 C =13621.364786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 H 0.087 0.913 4 O -0.275 6.275 5 C 0.162 3.838 6 C -0.151 4.151 7 C -0.046 4.046 8 C -0.147 4.147 9 I -0.056 7.056 10 C -0.043 4.043 11 C -0.212 4.212 12 C 0.443 3.557 13 O -0.573 6.573 14 N -0.551 5.551 15 C -0.302 4.302 16 H 0.106 0.894 17 C 0.026 3.974 18 N -0.898 5.898 19 Si 0.933 3.067 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.268 1.268 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.140 0.860 27 H 0.133 0.867 28 H 0.129 0.871 29 H 0.140 0.860 30 H 0.394 0.606 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.867 8.029 -23.233 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.013 3.987 3 H 0.104 0.896 4 O -0.186 6.186 5 C 0.115 3.885 6 C -0.171 4.171 7 C -0.066 4.066 8 C -0.287 4.287 9 I 0.094 6.906 10 C -0.064 4.064 11 C -0.232 4.232 12 C 0.227 3.773 13 O -0.457 6.457 14 N -0.188 5.188 15 C -0.431 4.431 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.539 5.539 19 Si 0.759 3.241 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.193 1.193 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.158 0.842 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.158 0.842 30 H 0.227 0.773 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.314 8.034 -24.297 25.593 hybrid contribution -0.285 -0.255 1.962 1.999 sum -0.599 7.779 -22.335 23.659 Atomic orbital electron populations 1.22345 0.93526 1.04143 1.03143 1.22320 0.95069 0.96746 0.84590 0.89565 1.86279 1.79744 1.36944 1.15674 1.19313 0.91898 0.90046 0.87280 1.20501 1.04038 1.01783 0.90826 1.20832 0.96278 0.91954 0.97579 1.23936 1.10784 0.97424 0.96577 1.96740 1.98447 1.69015 1.26445 1.20831 0.95264 0.99346 0.90910 1.21432 1.07345 0.94499 0.99959 1.19271 0.86618 0.87812 0.83608 1.90566 1.41460 1.27782 1.85885 1.41729 1.45724 1.27683 1.03707 1.19730 1.29618 1.11021 0.82762 0.87668 1.25291 0.96629 0.96421 0.99340 1.69601 1.36233 1.22685 1.25358 0.85810 0.78375 0.79779 0.80088 1.20250 1.20788 1.19268 0.91731 0.90850 0.89945 0.84211 0.84944 0.85281 0.84218 0.77262 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 9.07 37.16 0.34 -2.23 16 2 C 0.07 1.29 2.64 -27.88 -0.07 1.22 16 3 H 0.09 1.34 6.31 -51.93 -0.33 1.02 16 4 O -0.28 -5.03 9.33 -39.37 -0.37 -5.39 16 5 C 0.16 2.41 6.60 -39.22 -0.26 2.15 16 6 C -0.15 -1.97 9.99 -39.44 -0.39 -2.36 16 7 C -0.05 -0.51 9.75 -39.59 -0.39 -0.90 16 8 C -0.15 -1.62 6.20 -39.52 -0.25 -1.87 16 9 I -0.06 -0.53 40.26 -73.02 -2.94 -3.47 16 10 C -0.04 -0.48 9.75 -39.59 -0.39 -0.87 16 11 C -0.21 -2.68 8.24 -39.43 -0.33 -3.01 16 12 C 0.44 10.43 7.18 -10.99 -0.08 10.35 16 13 O -0.57 -15.96 16.07 -14.35 -0.23 -16.20 16 14 N -0.55 -13.50 5.18 -10.96 -0.06 -13.56 16 15 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 16 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 17 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 18 N -0.90 -23.49 13.05 55.50 0.72 -22.77 16 19 Si 0.93 20.44 29.55 -169.99 -5.02 15.42 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H 0.06 0.78 6.91 -51.93 -0.36 0.42 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.08 1.17 7.57 -51.92 -0.39 0.78 16 26 H 0.14 1.71 8.06 -52.48 -0.42 1.28 16 27 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 28 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 29 H 0.14 1.61 5.43 -52.49 -0.28 1.32 16 30 H 0.39 9.01 7.32 -40.82 -0.30 8.72 16 31 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 300.69 15.07 4.53 4.53 Total: -1.00 -30.27 300.69 -8.28 -38.55 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -2.86 Total: 8.17 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -2.05 Total: -5.29 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.67 Total: -36.33 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.60 Total: -21.59 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 53 Polarization: -0.53 SS G_CDS: -2.94 Total: -3.47 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.27 -8.28 -38.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225605277.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.191 kcal (2) G-P(sol) polarization free energy of solvation -30.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds