Wall clock time and date at job start Tue Mar 31 2020 07:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86797 * 120.00140 * 2 1 4 4 H 1.48504 * 109.47177 * 239.99761 * 3 2 1 5 5 H 1.48496 * 109.47385 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47354 * 119.99884 * 3 2 1 7 7 C 1.40047 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00247 * 180.02562 * 7 2 1 9 9 C 1.46378 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.21688 * 120.00161 * 0.02562 * 9 7 2 11 11 N 1.34781 * 119.99959 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99647 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.46871 * 180.02562 * 12 11 9 14 14 O 1.42904 * 109.47196 * 64.99661 * 13 12 11 15 15 C 1.35909 * 116.99958 * 180.02562 * 14 13 12 16 16 C 1.38727 * 120.05083 * 0.25441 * 15 14 13 17 17 C 1.38137 * 119.95364 * 180.23554 * 16 15 14 18 18 C 1.38323 * 120.04767 * 359.50972 * 17 16 15 19 19 I 2.09493 * 119.95299 * 180.27793 * 18 17 16 20 20 C 1.38321 * 120.09618 * 0.25887 * 18 17 16 21 21 C 1.38141 * 120.05084 * 359.97438 * 20 18 17 22 22 H 0.97000 * 119.99707 * 0.02562 * 1 2 3 23 23 H 0.96995 * 119.99746 * 0.02562 * 11 9 7 24 24 H 1.09003 * 109.47361 * 60.00511 * 12 11 9 25 25 H 1.08995 * 109.47249 * 299.99922 * 12 11 9 26 26 H 1.09006 * 109.46910 * 304.99991 * 13 12 11 27 27 H 1.08994 * 109.47080 * 184.99803 * 13 12 11 28 28 H 1.08004 * 120.02624 * 0.02562 * 16 15 14 29 29 H 1.08002 * 119.98114 * 179.79521 * 17 16 15 30 30 H 1.08003 * 119.97530 * 179.97438 * 20 18 17 31 31 H 1.07998 * 120.02738 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0946 1.6963 -1.2125 5 1 1.2759 2.7464 -0.0006 6 1 3.0946 1.6964 1.2126 7 6 2.0070 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0017 10 8 0.0582 -2.4805 0.0017 11 7 1.9489 -3.6477 0.0017 12 6 1.2163 -4.9164 0.0022 13 6 2.2105 -6.0794 0.0028 14 8 2.9529 -6.0709 1.2238 15 6 3.8860 -7.0457 1.3854 16 6 4.0866 -7.9878 0.3869 17 6 5.0321 -8.9806 0.5553 18 6 5.7858 -9.0300 1.7141 19 53 7.2250 -10.5319 1.9626 20 6 5.5909 -8.0889 2.7089 21 6 4.6431 -7.0971 2.5468 22 1 -0.4850 0.8401 -0.0004 23 1 2.9189 -3.6477 0.0013 24 1 0.5894 -4.9744 -0.8875 25 1 0.5900 -4.9739 0.8924 26 1 2.8947 -5.9729 -0.8392 27 1 1.6685 -7.0208 -0.0863 28 1 3.5015 -7.9470 -0.5200 29 1 5.1863 -9.7162 -0.2203 30 1 6.1802 -8.1295 3.6131 31 1 4.4915 -6.3623 3.3236 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225768237.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:18 Heat of formation + Delta-G solvation = -64.829607 kcal Electronic energy + Delta-G solvation = -16976.802629 eV Core-core repulsion = 13888.670875 eV Total energy + Delta-G solvation = -3088.131754 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 360.996 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.26308 -39.48318 -38.59354 -35.40768 -34.46902 -32.68860 -32.15457 -30.70999 -28.41629 -27.89447 -24.78554 -23.28416 -22.45126 -21.67400 -19.40556 -19.27379 -17.53848 -17.16622 -16.91703 -16.37476 -15.92947 -15.79847 -15.61867 -15.13273 -14.56069 -14.45135 -14.17034 -13.82722 -13.39736 -13.16314 -12.76607 -12.69381 -12.56846 -12.22079 -12.16273 -12.04553 -11.86044 -10.95893 -10.92066 -10.84750 -10.12224 -9.89535 -9.50722 -9.22192 -8.29568 -6.85968 0.15789 0.18702 0.24196 1.40468 1.43852 1.55636 2.10647 2.25130 2.46963 2.59606 3.10276 3.61653 3.65433 3.80941 3.91772 4.12255 4.17181 4.30953 4.36598 4.46043 4.70636 4.84619 4.90467 4.98775 5.21659 5.24736 5.31570 5.59439 5.86550 6.19641 6.24447 6.35994 6.86408 7.51933 8.47766 8.66561 Molecular weight = 361.00amu Principal moments of inertia in cm(-1) A = 0.033036 B = 0.001904 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.368274 B =14706.093508 C =15273.215863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 0.998 3.002 4 H -0.253 1.253 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.574 4.574 8 H 0.086 0.914 9 C 0.537 3.463 10 O -0.633 6.633 11 N -0.753 5.753 12 C 0.131 3.869 13 C 0.062 3.938 14 O -0.326 6.326 15 C 0.137 3.863 16 C -0.207 4.207 17 C -0.045 4.045 18 C -0.150 4.150 19 I -0.038 7.038 20 C -0.046 4.046 21 C -0.162 4.162 22 H 0.275 0.725 23 H 0.395 0.605 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.154 0.846 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.736 -24.919 3.145 31.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.187 4.187 3 Si 0.817 3.183 4 H -0.177 1.177 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.611 4.611 8 H 0.104 0.896 9 C 0.342 3.658 10 O -0.521 6.521 11 N -0.408 5.408 12 C 0.007 3.993 13 C -0.013 4.013 14 O -0.239 6.239 15 C 0.091 3.909 16 C -0.227 4.227 17 C -0.066 4.066 18 C -0.291 4.291 19 I 0.111 6.889 20 C -0.066 4.066 21 C -0.182 4.182 22 H 0.085 0.915 23 H 0.228 0.772 24 H 0.089 0.911 25 H 0.057 0.943 26 H 0.106 0.894 27 H 0.122 0.878 28 H 0.172 0.828 29 H 0.165 0.835 30 H 0.166 0.834 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 18.618 -25.760 3.440 31.969 hybrid contribution -0.572 1.518 -0.224 1.637 sum 18.047 -24.242 3.216 30.393 Atomic orbital electron populations 1.70179 1.09509 1.29042 1.36401 1.26983 0.95551 1.04981 0.91196 0.85067 0.78204 0.74708 0.80283 1.17727 1.19846 1.17967 1.21402 0.94695 0.90189 1.54793 0.89596 1.18589 0.86812 0.84400 0.76048 1.90550 1.16153 1.88010 1.57373 1.45766 1.09273 1.04638 1.81166 1.21067 0.94099 0.83201 1.00944 1.23163 0.93862 0.99052 0.85203 1.86188 1.48481 1.48526 1.40730 1.19415 0.88833 0.87885 0.94797 1.21524 1.03344 0.97238 1.00626 1.21079 0.92599 0.96959 0.95926 1.24231 1.03928 1.01772 0.99119 1.96794 1.49305 1.44721 1.98042 1.21027 0.95616 0.91684 0.98288 1.20671 0.98238 1.01758 0.97562 0.91522 0.77156 0.91082 0.94342 0.89422 0.87831 0.82829 0.83461 0.83419 0.84341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.63 11.83 21.84 0.26 -50.37 16 2 C 0.03 1.57 5.50 85.30 0.47 2.04 16 3 Si 1.00 41.08 29.56 68.60 2.03 43.11 16 4 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 6 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 7 C -0.57 -32.83 9.54 24.83 0.24 -32.59 16 8 H 0.09 4.41 7.85 -2.91 -0.02 4.39 16 9 C 0.54 31.40 7.75 86.36 0.67 32.07 16 10 O -0.63 -42.66 15.02 -4.31 -0.06 -42.72 16 11 N -0.75 -33.76 5.50 -467.39 -2.57 -36.33 16 12 C 0.13 4.81 6.06 86.38 0.52 5.33 16 13 C 0.06 1.53 4.87 71.98 0.35 1.88 16 14 O -0.33 -9.18 10.08 -92.52 -0.93 -10.11 16 15 C 0.14 3.22 6.69 22.51 0.15 3.37 16 16 C -0.21 -3.87 9.04 22.36 0.20 -3.67 16 17 C -0.05 -0.76 9.75 22.27 0.22 -0.55 16 18 C -0.15 -2.65 6.20 22.31 0.14 -2.51 16 19 I -0.04 -0.57 40.26 -18.82 -0.76 -1.33 16 20 C -0.05 -0.84 9.75 22.27 0.22 -0.62 16 21 C -0.16 -3.54 9.99 22.37 0.22 -3.31 16 22 H 0.27 15.33 8.29 -92.71 -0.77 14.56 16 23 H 0.39 15.61 8.45 -92.71 -0.78 14.83 16 24 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 25 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.09 1.84 7.65 -2.38 -0.02 1.82 16 27 H 0.10 1.91 7.67 -2.39 -0.02 1.89 16 28 H 0.15 2.24 6.30 -2.91 -0.02 2.23 16 29 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 30 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 31 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -75.66 305.38 1.74 -73.92 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.38 Total: 22.40 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 3.40 Total: 1.44 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -2.31 Total: -86.70 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -1.00 Total: -52.84 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 53 Polarization: -0.57 SS G_CDS: -0.76 Total: -1.33 kcal Total: -75.66 1.74 -73.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225768237.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.090 kcal (2) G-P(sol) polarization free energy of solvation -75.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds