Wall clock time and date at job start Tue Mar 31 2020 06:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86804 * 119.99530 * 2 1 4 4 H 1.48499 * 109.47280 * 274.98587 * 3 2 1 5 5 H 1.48498 * 109.46997 * 34.98598 * 3 2 1 6 6 H 1.48498 * 109.47073 * 154.98351 * 3 2 1 7 7 C 1.39892 * 120.00589 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00481 * 147.53011 * 7 2 1 9 9 C 1.41146 * 119.99861 * 327.52479 * 7 2 1 10 10 C 1.40884 * 120.16285 * 157.97146 * 9 7 2 11 11 C 1.36356 * 119.82993 * 180.02562 * 10 9 7 12 12 C 1.39509 * 120.16621 * 0.02562 * 11 10 9 13 13 N 1.39139 * 119.83112 * 179.97438 * 12 11 10 14 14 C 1.34768 * 120.00193 * 37.86322 * 13 12 11 15 15 O 1.21640 * 120.00243 * 356.66790 * 14 13 12 16 16 C 1.47096 * 119.99942 * 176.67147 * 14 13 12 17 17 C 1.37937 * 119.99250 * 0.02562 * 16 14 13 18 18 N 1.34839 * 122.16199 * 180.26795 * 17 16 14 19 19 C 1.36496 * 120.39171 * 359.48361 * 18 17 16 20 20 C 1.37983 * 114.78936 * 180.22648 * 19 18 17 21 21 C 1.37702 * 118.91579 * 180.27798 * 20 19 18 22 22 C 1.39079 * 120.16294 * 359.97438 * 21 20 19 23 23 C 1.38019 * 121.21983 * 0.02621 * 22 21 20 24 24 C 1.39423 * 118.98226 * 359.97438 * 23 22 21 25 25 C 1.47420 * 123.37384 * 179.97438 * 24 23 22 26 26 O 1.21858 * 121.84547 * 0.04367 * 25 24 23 27 27 C 1.51002 * 106.92777 * 0.29389 * 20 19 18 28 28 C 1.47341 * 131.23464 * 179.71096 * 18 17 16 29 29 C 1.39506 * 120.33251 * 0.24793 * 12 11 10 30 30 C 1.36363 * 120.16300 * 359.44852 * 29 12 11 31 31 H 0.97002 * 120.00576 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.07942 * 0.02562 * 10 9 7 33 33 H 1.07998 * 119.91563 * 180.02562 * 11 10 9 34 34 H 0.97001 * 119.99492 * 217.85811 * 13 12 11 35 35 H 1.08002 * 118.91364 * 359.97438 * 17 16 14 36 36 H 1.08002 * 119.91869 * 179.97438 * 21 20 19 37 37 H 1.07997 * 119.38746 * 180.02562 * 22 21 20 38 38 H 1.08005 * 120.50973 * 180.02562 * 23 22 21 39 39 H 1.09004 * 110.43963 * 118.73890 * 27 20 19 40 40 H 1.09000 * 110.44800 * 241.26307 * 27 20 19 41 41 H 1.09003 * 110.24806 * 299.03830 * 28 18 17 42 42 H 1.09001 * 110.24347 * 60.94911 * 28 18 17 43 43 H 1.07993 * 119.91961 * 179.72462 * 29 12 11 44 44 H 1.07998 * 120.08613 * 180.24528 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3847 2.1074 -1.3947 5 1 1.4966 2.6200 0.8028 6 1 3.5888 1.4123 0.5921 7 6 2.0083 -1.2114 -0.0005 8 1 2.9617 -1.2843 -0.5027 9 6 1.4682 -2.3385 0.6553 10 6 1.8864 -3.6348 0.2953 11 6 1.3597 -4.7190 0.9330 12 6 0.4088 -4.5469 1.9392 13 7 -0.1244 -5.6581 2.5849 14 6 0.6618 -6.7162 2.8654 15 8 1.8221 -6.7254 2.5005 16 6 0.1166 -7.8599 3.6126 17 6 -1.1994 -7.8496 4.0258 18 7 -1.7426 -8.8716 4.7176 19 6 -0.9950 -9.9712 5.0260 20 6 -1.6669 -10.9483 5.7315 21 6 -0.9913 -12.0926 6.0924 22 6 0.3462 -12.2528 5.7467 23 6 1.0243 -11.2795 5.0411 24 6 0.3476 -10.1178 4.6719 25 6 0.9766 -9.0176 3.9187 26 8 2.1432 -9.0621 3.5694 27 6 -3.0795 -10.4533 5.9315 28 6 -3.1003 -9.0673 5.2552 29 6 -0.0144 -3.2667 2.2972 30 6 0.5078 -2.1728 1.6726 31 1 -0.4851 0.8400 -0.0004 32 1 2.6221 -3.7695 -0.4837 33 1 1.6796 -5.7133 0.6585 34 1 -1.0620 -5.6711 2.8333 35 1 -1.8135 -6.9926 3.7915 36 1 -1.5014 -12.8676 6.6452 37 1 0.8639 -13.1555 6.0357 38 1 2.0630 -11.4161 4.7783 39 1 -3.7904 -11.1284 5.4551 40 1 -3.3011 -10.3536 6.9941 41 1 -3.3352 -8.2876 5.9798 42 1 -3.8307 -9.0621 4.4461 43 1 -0.7542 -3.1415 3.0739 44 1 0.1822 -1.1821 1.9535 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226093702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:28 Heat of formation + Delta-G solvation = 17.172630 kcal Electronic energy + Delta-G solvation = -30092.517831 eV Core-core repulsion = 25939.946734 eV Total energy + Delta-G solvation = -4152.571096 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.126 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.20196 -39.60249 -38.35182 -37.61732 -36.87014 -34.94791 -34.28873 -32.99274 -31.18713 -30.61847 -29.63477 -29.46394 -28.71035 -25.34433 -24.88194 -24.19306 -23.12270 -21.76104 -21.49455 -20.76309 -19.93621 -18.49809 -18.06353 -17.56815 -17.24650 -16.83662 -16.20932 -15.80313 -15.75470 -15.17987 -14.85923 -14.76152 -14.63484 -14.08093 -14.00584 -13.83584 -13.60424 -13.41374 -13.09213 -12.94441 -12.81759 -12.73753 -12.60103 -12.25746 -12.02688 -11.93542 -11.72552 -11.58747 -11.34781 -11.11923 -10.90407 -10.49050 -10.12057 -9.69267 -9.67369 -9.53305 -9.28882 -9.27045 -8.92267 -8.61096 -7.87183 -7.48967 -7.08444 -6.83384 -4.22008 0.42187 0.54875 1.35315 2.06011 2.56546 2.77080 3.06870 3.08227 3.16035 3.22422 3.47915 3.59070 3.68707 3.77421 3.92525 3.98469 4.03343 4.32729 4.42442 4.50775 4.55894 4.56184 4.71713 4.80550 4.92085 5.04734 5.11630 5.23826 5.33959 5.52462 5.62361 5.67297 5.75229 5.93793 6.09254 6.17925 6.22694 6.47489 6.51795 6.64589 6.83431 7.03392 7.04730 7.21052 7.35326 7.62679 7.76774 7.90133 7.97866 8.08254 8.31663 8.36744 8.60363 8.88760 8.90338 9.08678 10.05822 Molecular weight = 360.13amu Principal moments of inertia in cm(-1) A = 0.024069 B = 0.001982 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.034037 B =14126.636583 C =15065.031164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.088 3.912 3 Si 0.895 3.105 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.465 4.465 8 H 0.082 0.918 9 C 0.112 3.888 10 C -0.222 4.222 11 C -0.065 4.065 12 C -0.016 4.016 13 N -0.654 5.654 14 C 0.558 3.442 15 O -0.505 6.505 16 C -0.306 4.306 17 C 0.212 3.788 18 N -0.499 5.499 19 C 0.156 3.844 20 C -0.146 4.146 21 C -0.046 4.046 22 C -0.155 4.155 23 C -0.030 4.030 24 C -0.177 4.177 25 C 0.432 3.568 26 O -0.443 6.443 27 C -0.080 4.080 28 C 0.101 3.899 29 C -0.103 4.103 30 C -0.172 4.172 31 H 0.282 0.718 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.385 0.615 35 H 0.163 0.837 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.142 0.858 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.442 -20.579 14.635 28.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.133 4.133 3 Si 0.718 3.282 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.493 4.493 8 H 0.100 0.900 9 C 0.109 3.891 10 C -0.242 4.242 11 C -0.085 4.085 12 C -0.108 4.108 13 N -0.298 5.298 14 C 0.346 3.654 15 O -0.380 6.380 16 C -0.318 4.318 17 C 0.082 3.918 18 N -0.189 5.189 19 C 0.054 3.946 20 C -0.149 4.149 21 C -0.064 4.064 22 C -0.173 4.173 23 C -0.049 4.049 24 C -0.181 4.181 25 C 0.312 3.688 26 O -0.318 6.318 27 C -0.118 4.118 28 C -0.019 4.019 29 C -0.124 4.124 30 C -0.191 4.191 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.218 0.782 35 H 0.180 0.820 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.160 0.840 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.106 0.894 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.387 -20.350 14.177 27.722 hybrid contribution -0.467 0.944 0.155 1.065 sum -12.854 -19.405 14.332 27.335 Atomic orbital electron populations 1.69950 1.08063 1.29753 1.31650 1.25929 0.94354 1.01476 0.91544 0.86524 0.81589 0.80875 0.79165 1.19495 1.19937 1.18083 1.19500 1.05460 0.93767 1.30587 0.90014 1.17599 0.89731 0.91837 0.89896 1.20616 1.06958 0.92302 1.04333 1.20349 0.96288 0.98147 0.93697 1.17002 1.07280 0.84651 1.01846 1.42831 1.11338 1.16435 1.59242 1.17367 0.86082 0.81778 0.80216 1.90849 1.16490 1.79036 1.51606 1.22196 0.93899 1.01350 1.14397 1.21822 0.93742 0.89203 0.87010 1.43428 1.12153 1.14928 1.48352 1.18035 0.91824 0.88511 0.96258 1.19546 0.95966 0.95525 1.03888 1.20530 0.93789 0.95213 0.96907 1.21140 0.94384 1.00196 1.01626 1.21199 1.00181 0.90592 0.92888 1.20082 0.92744 0.98999 1.06236 1.19348 0.87472 0.84034 0.77926 1.90760 1.16416 1.78991 1.45674 1.21132 0.93955 0.94136 1.02530 1.22718 0.80989 0.98792 0.99382 1.20143 1.00899 0.91589 0.99725 1.20599 1.02611 0.96580 0.99345 0.90694 0.88709 0.87829 0.78160 0.81978 0.85000 0.84921 0.83992 0.88304 0.88429 0.88446 0.88610 0.89410 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.65 11.78 55.54 0.65 -19.00 16 2 C 0.09 2.22 4.77 -17.34 -0.08 2.14 16 3 Si 0.90 18.54 29.66 -169.99 -5.04 13.50 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.47 -12.58 8.94 -37.86 -0.34 -12.92 16 8 H 0.08 2.15 8.02 -52.49 -0.42 1.73 16 9 C 0.11 3.08 5.57 -106.79 -0.60 2.48 16 10 C -0.22 -5.91 9.74 -39.26 -0.38 -6.29 16 11 C -0.06 -1.66 8.59 -39.79 -0.34 -2.00 16 12 C -0.02 -0.37 6.25 -83.60 -0.52 -0.89 16 13 N -0.65 -12.19 5.23 -10.81 -0.06 -12.24 16 14 C 0.56 11.28 7.56 -12.67 -0.10 11.19 16 15 O -0.51 -12.81 13.13 -15.06 -0.20 -13.01 16 16 C -0.31 -4.87 6.04 -102.68 -0.62 -5.49 16 17 C 0.21 2.22 10.43 -16.34 -0.17 2.05 16 18 N -0.50 -4.24 3.14 -113.58 -0.36 -4.59 16 19 C 0.16 1.58 6.33 -85.36 -0.54 1.04 16 20 C -0.15 -1.03 6.39 -104.76 -0.67 -1.70 16 21 C -0.05 -0.29 10.05 -39.47 -0.40 -0.68 16 22 C -0.15 -1.16 10.00 -39.35 -0.39 -1.55 16 23 C -0.03 -0.32 9.79 -39.22 -0.38 -0.71 16 24 C -0.18 -2.30 5.88 -105.20 -0.62 -2.91 16 25 C 0.43 7.47 7.18 -32.11 -0.23 7.24 16 26 O -0.44 -9.46 16.08 -15.26 -0.25 -9.71 16 27 C -0.08 -0.26 6.96 -27.09 -0.19 -0.45 16 28 C 0.10 0.38 7.73 -2.94 -0.02 0.36 16 29 C -0.10 -2.40 9.90 -39.78 -0.39 -2.80 16 30 C -0.17 -4.46 8.74 -39.26 -0.34 -4.81 16 31 H 0.28 6.45 8.30 -40.82 -0.34 6.12 16 32 H 0.09 2.41 8.06 -52.49 -0.42 1.99 16 33 H 0.10 2.67 6.45 -52.49 -0.34 2.33 16 34 H 0.38 5.32 6.78 -40.82 -0.28 5.04 16 35 H 0.16 1.15 6.25 -52.49 -0.33 0.82 16 36 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.14 1.50 7.97 -52.48 -0.42 1.08 16 39 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 40 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 41 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.11 2.79 6.52 -52.49 -0.34 2.45 16 LS Contribution 372.26 15.07 5.61 5.61 Total: -1.00 -37.57 372.26 -11.61 -49.17 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -4.64 Total: 6.99 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -7.33 Total: -16.72 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.24 Total: -35.84 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.44 Total: -22.72 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.04 Total: 13.50 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.57 -11.61 -49.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226093702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.343 kcal (2) G-P(sol) polarization free energy of solvation -37.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds