Wall clock time and date at job start Tue Mar 31 2020 06:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86804 * 119.99530 * 2 1 4 4 H 1.48499 * 109.47280 * 274.98587 * 3 2 1 5 5 H 1.48498 * 109.46997 * 34.98598 * 3 2 1 6 6 H 1.48498 * 109.47073 * 154.98351 * 3 2 1 7 7 C 1.39892 * 120.00589 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00481 * 147.53011 * 7 2 1 9 9 C 1.41146 * 119.99861 * 327.52479 * 7 2 1 10 10 C 1.40884 * 120.16285 * 157.97146 * 9 7 2 11 11 C 1.36356 * 119.82993 * 180.02562 * 10 9 7 12 12 C 1.39509 * 120.16621 * 0.02562 * 11 10 9 13 13 N 1.39139 * 119.83112 * 179.97438 * 12 11 10 14 14 C 1.34768 * 120.00193 * 37.86322 * 13 12 11 15 15 O 1.21640 * 120.00243 * 356.66790 * 14 13 12 16 16 C 1.47096 * 119.99942 * 176.67147 * 14 13 12 17 17 C 1.37937 * 119.99250 * 0.02562 * 16 14 13 18 18 N 1.34839 * 122.16199 * 180.26795 * 17 16 14 19 19 C 1.36496 * 120.39171 * 359.48361 * 18 17 16 20 20 C 1.37983 * 114.78936 * 180.22648 * 19 18 17 21 21 C 1.37702 * 118.91579 * 180.27798 * 20 19 18 22 22 C 1.39079 * 120.16294 * 359.97438 * 21 20 19 23 23 C 1.38019 * 121.21983 * 0.02621 * 22 21 20 24 24 C 1.39423 * 118.98226 * 359.97438 * 23 22 21 25 25 C 1.47420 * 123.37384 * 179.97438 * 24 23 22 26 26 O 1.21858 * 121.84547 * 0.04367 * 25 24 23 27 27 C 1.51002 * 106.92777 * 0.29389 * 20 19 18 28 28 C 1.47341 * 131.23464 * 179.71096 * 18 17 16 29 29 C 1.39506 * 120.33251 * 0.24793 * 12 11 10 30 30 C 1.36363 * 120.16300 * 359.44852 * 29 12 11 31 31 H 0.97002 * 120.00576 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.07942 * 0.02562 * 10 9 7 33 33 H 1.07998 * 119.91563 * 180.02562 * 11 10 9 34 34 H 0.97001 * 119.99492 * 217.85811 * 13 12 11 35 35 H 1.08002 * 118.91364 * 359.97438 * 17 16 14 36 36 H 1.08002 * 119.91869 * 179.97438 * 21 20 19 37 37 H 1.07997 * 119.38746 * 180.02562 * 22 21 20 38 38 H 1.08005 * 120.50973 * 180.02562 * 23 22 21 39 39 H 1.09004 * 110.43963 * 118.73890 * 27 20 19 40 40 H 1.09000 * 110.44800 * 241.26307 * 27 20 19 41 41 H 1.09003 * 110.24806 * 299.03830 * 28 18 17 42 42 H 1.09001 * 110.24347 * 60.94911 * 28 18 17 43 43 H 1.07993 * 119.91961 * 179.72462 * 29 12 11 44 44 H 1.07998 * 120.08613 * 180.24528 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3847 2.1074 -1.3947 5 1 1.4966 2.6200 0.8028 6 1 3.5888 1.4123 0.5921 7 6 2.0083 -1.2114 -0.0005 8 1 2.9617 -1.2843 -0.5027 9 6 1.4682 -2.3385 0.6553 10 6 1.8864 -3.6348 0.2953 11 6 1.3597 -4.7190 0.9330 12 6 0.4088 -4.5469 1.9392 13 7 -0.1244 -5.6581 2.5849 14 6 0.6618 -6.7162 2.8654 15 8 1.8221 -6.7254 2.5005 16 6 0.1166 -7.8599 3.6126 17 6 -1.1994 -7.8496 4.0258 18 7 -1.7426 -8.8716 4.7176 19 6 -0.9950 -9.9712 5.0260 20 6 -1.6669 -10.9483 5.7315 21 6 -0.9913 -12.0926 6.0924 22 6 0.3462 -12.2528 5.7467 23 6 1.0243 -11.2795 5.0411 24 6 0.3476 -10.1178 4.6719 25 6 0.9766 -9.0176 3.9187 26 8 2.1432 -9.0621 3.5694 27 6 -3.0795 -10.4533 5.9315 28 6 -3.1003 -9.0673 5.2552 29 6 -0.0144 -3.2667 2.2972 30 6 0.5078 -2.1728 1.6726 31 1 -0.4851 0.8400 -0.0004 32 1 2.6221 -3.7695 -0.4837 33 1 1.6796 -5.7133 0.6585 34 1 -1.0620 -5.6711 2.8333 35 1 -1.8135 -6.9926 3.7915 36 1 -1.5014 -12.8676 6.6452 37 1 0.8639 -13.1555 6.0357 38 1 2.0630 -11.4161 4.7783 39 1 -3.7904 -11.1284 5.4551 40 1 -3.3011 -10.3536 6.9941 41 1 -3.3352 -8.2876 5.9798 42 1 -3.8307 -9.0621 4.4461 43 1 -0.7542 -3.1415 3.0739 44 1 0.1822 -1.1821 1.9535 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226093702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:27 Heat of formation + Delta-G solvation = -6.309509 kcal Electronic energy + Delta-G solvation = -30093.536093 eV Core-core repulsion = 25939.946734 eV Total energy + Delta-G solvation = -4153.589358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.126 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.94969 -41.13601 -39.63146 -38.86904 -38.18981 -36.19081 -35.70781 -34.72822 -32.21937 -31.46089 -31.42456 -30.67541 -30.00035 -27.01039 -25.66631 -25.32218 -23.92580 -23.33891 -22.53669 -22.35824 -21.43582 -19.52748 -19.31496 -18.99921 -18.70523 -17.60494 -17.36125 -17.01970 -16.80029 -16.71920 -16.13825 -15.80143 -15.74777 -15.42251 -15.32110 -15.27235 -14.80073 -14.46789 -14.33203 -13.98540 -13.91818 -13.87893 -13.72837 -13.59139 -13.34047 -13.24296 -12.84697 -12.82711 -12.67890 -12.36421 -12.34007 -11.99204 -11.92177 -11.59208 -11.20970 -10.97228 -10.58442 -10.40090 -10.37226 -9.98956 -9.48950 -9.04120 -8.78576 -8.64430 -6.23595 -0.43728 -0.29043 0.57047 0.86237 1.12573 1.36682 1.37690 1.42757 1.53885 1.63774 2.20039 2.26102 2.34617 2.64625 2.87861 2.99882 3.24811 3.31007 3.66628 3.70094 3.73518 3.93910 4.06532 4.17475 4.21637 4.27128 4.39594 4.42247 4.48817 4.57597 4.72952 4.78678 4.89497 5.00003 5.02204 5.06986 5.11090 5.14836 5.25350 5.28824 5.37153 5.43532 5.45602 5.63781 5.80990 5.84803 5.88863 6.02038 6.10084 6.35403 6.60625 6.77585 6.79300 6.88032 6.98655 7.49685 8.20277 Molecular weight = 360.13amu Principal moments of inertia in cm(-1) A = 0.024069 B = 0.001982 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.034037 B =14126.636583 C =15065.031164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.053 3.947 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.257 1.257 6 H -0.265 1.265 7 C -0.506 4.506 8 H 0.071 0.929 9 C 0.084 3.916 10 C -0.248 4.248 11 C -0.080 4.080 12 C -0.004 4.004 13 N -0.640 5.640 14 C 0.559 3.441 15 O -0.574 6.574 16 C -0.373 4.373 17 C 0.271 3.729 18 N -0.480 5.480 19 C 0.128 3.872 20 C -0.127 4.127 21 C -0.038 4.038 22 C -0.137 4.137 23 C -0.064 4.064 24 C -0.202 4.202 25 C 0.412 3.588 26 O -0.523 6.523 27 C -0.075 4.075 28 C 0.088 3.912 29 C -0.095 4.095 30 C -0.188 4.188 31 H 0.296 0.704 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.412 0.588 35 H 0.207 0.793 36 H 0.178 0.822 37 H 0.161 0.839 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.133 0.867 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.352 -21.721 18.274 34.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.167 4.167 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.180 1.180 6 H -0.189 1.189 7 C -0.533 4.533 8 H 0.090 0.910 9 C 0.081 3.919 10 C -0.268 4.268 11 C -0.100 4.100 12 C -0.097 4.097 13 N -0.287 5.287 14 C 0.350 3.650 15 O -0.453 6.453 16 C -0.385 4.385 17 C 0.134 3.866 18 N -0.166 5.166 19 C 0.027 3.973 20 C -0.130 4.130 21 C -0.056 4.056 22 C -0.156 4.156 23 C -0.083 4.083 24 C -0.206 4.206 25 C 0.299 3.701 26 O -0.406 6.406 27 C -0.112 4.112 28 C -0.029 4.029 29 C -0.115 4.115 30 C -0.207 4.207 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.251 0.749 35 H 0.224 0.776 36 H 0.195 0.805 37 H 0.179 0.821 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.150 0.850 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.433 -21.564 17.879 33.532 hybrid contribution 1.075 0.955 -0.775 1.633 sum -17.358 -20.609 17.104 31.915 Atomic orbital electron populations 1.69928 1.09241 1.31533 1.31140 1.26703 0.95149 1.04307 0.90498 0.85368 0.79562 0.76151 0.79718 1.18380 1.18038 1.18912 1.19679 1.05777 0.95403 1.32472 0.91048 1.17910 0.90880 0.92036 0.91047 1.20699 1.07944 0.92983 1.05201 1.20405 0.97537 0.97092 0.95011 1.17071 1.05807 0.86390 1.00436 1.42590 1.12608 1.14859 1.58671 1.18012 0.85316 0.82496 0.79199 1.90807 1.19612 1.80443 1.54456 1.21551 0.96676 1.00543 1.19750 1.22083 0.91684 0.89925 0.82862 1.44033 1.13930 1.13319 1.45326 1.18334 0.90987 0.90308 0.97717 1.20186 0.97724 0.94148 1.00896 1.21075 0.92919 0.95899 0.95737 1.21529 0.95288 0.99661 0.99099 1.21254 1.00043 0.91682 0.95295 1.19993 0.94641 0.98596 1.07354 1.20102 0.86980 0.85663 0.77391 1.90695 1.19302 1.80837 1.49799 1.21383 0.91389 0.93796 1.04615 1.23378 0.78122 1.00281 1.01168 1.20450 1.00915 0.90377 0.99781 1.20669 1.03048 0.97367 0.99650 0.89334 0.89518 0.89277 0.74945 0.77646 0.80459 0.82140 0.85993 0.85487 0.85598 0.85453 0.85633 0.84970 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.77 11.78 21.82 0.26 -40.51 16 2 C 0.05 2.71 4.77 85.24 0.41 3.12 16 3 Si 0.97 38.40 29.66 68.60 2.03 40.44 16 4 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 5 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 6 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 7 C -0.51 -28.80 8.94 23.38 0.21 -28.59 16 8 H 0.07 4.04 8.02 -2.91 -0.02 4.02 16 9 C 0.08 4.87 5.57 -21.27 -0.12 4.75 16 10 C -0.25 -14.31 9.74 22.48 0.22 -14.09 16 11 C -0.08 -4.41 8.59 22.14 0.19 -4.22 16 12 C 0.00 -0.19 6.25 38.59 0.24 0.05 16 13 N -0.64 -23.94 5.23 -306.34 -1.60 -25.54 16 14 C 0.56 24.06 7.56 86.57 0.65 24.71 16 15 O -0.57 -32.24 13.13 15.26 0.20 -32.04 16 16 C -0.37 -12.43 6.04 -18.60 -0.11 -12.55 16 17 C 0.27 4.94 10.43 84.16 0.88 5.82 16 18 N -0.48 -6.08 3.14 -513.25 -1.61 -7.69 16 19 C 0.13 2.25 6.33 38.69 0.24 2.50 16 20 C -0.13 -1.11 6.39 -19.96 -0.13 -1.23 16 21 C -0.04 -0.28 10.05 22.34 0.22 -0.05 16 22 C -0.14 -1.74 10.00 22.42 0.22 -1.51 16 23 C -0.06 -1.47 9.79 22.50 0.22 -1.25 16 24 C -0.20 -5.52 5.88 -20.24 -0.12 -5.64 16 25 C 0.41 15.88 7.18 27.11 0.19 16.07 16 26 O -0.52 -25.97 16.08 14.56 0.23 -25.74 16 27 C -0.08 0.08 6.96 30.36 0.21 0.30 16 28 C 0.09 0.03 7.73 86.64 0.67 0.70 16 29 C -0.10 -4.40 9.90 22.14 0.22 -4.18 16 30 C -0.19 -9.98 8.74 22.48 0.20 -9.79 16 31 H 0.30 13.32 8.30 -92.71 -0.77 12.55 16 32 H 0.09 4.91 8.06 -2.91 -0.02 4.88 16 33 H 0.09 5.08 6.45 -2.91 -0.02 5.07 16 34 H 0.41 10.34 6.78 -92.71 -0.63 9.71 16 35 H 0.21 1.84 6.25 -2.91 -0.02 1.82 16 36 H 0.18 -0.20 8.06 -2.91 -0.02 -0.22 16 37 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 38 H 0.12 3.12 7.97 -2.91 -0.02 3.09 16 39 H 0.13 -0.67 8.14 -2.39 -0.02 -0.69 16 40 H 0.13 -0.66 8.14 -2.39 -0.02 -0.68 16 41 H 0.13 -0.53 8.14 -2.39 -0.02 -0.55 16 42 H 0.13 -0.52 8.14 -2.39 -0.02 -0.53 16 43 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 44 H 0.10 5.50 6.52 -2.91 -0.02 5.48 16 Total: -1.00 -98.69 372.26 4.69 -94.00 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.45 Total: 22.15 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: 4.73 Total: -25.07 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -2.96 Total: -73.74 kcal Atomic # 8 Polarization: -58.21 SS G_CDS: 0.43 Total: -57.77 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.44 kcal Total: -98.69 4.69 -94.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226093702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.695 kcal (2) G-P(sol) polarization free energy of solvation -98.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds