Wall clock time and date at job start Tue Mar 31 2020 07:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47165 * 2 1 4 4 C 1.50705 * 109.46908 * 120.00120 * 2 1 3 5 5 C 1.34321 * 126.44151 * 119.99902 * 4 2 1 6 6 N 1.34482 * 107.66855 * 180.02562 * 5 4 2 7 7 C 1.30255 * 108.70079 * 0.02562 * 6 5 4 8 8 C 1.50693 * 125.62275 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47147 * 90.02056 * 8 7 6 10 10 C 1.46899 * 110.99973 * 66.05014 * 9 8 7 11 11 C 1.46908 * 110.99771 * 190.00085 * 9 8 7 12 12 H 1.08997 * 110.62739 * 300.39152 * 11 9 8 13 13 C 1.55141 * 110.70288 * 177.09866 * 11 9 8 14 14 C 1.54907 * 101.65197 * 205.96618 * 13 11 9 15 15 N 1.47842 * 104.79632 * 37.06461 * 14 13 11 16 16 C 1.46899 * 111.00469 * 213.63673 * 15 14 13 17 17 C 1.52999 * 109.47131 * 290.85075 * 16 15 14 18 18 H 1.09004 * 109.47076 * 304.99094 * 17 16 15 19 19 C 1.47196 * 109.47707 * 64.99392 * 17 16 15 20 20 N 9.47095 * 133.34451 * 101.05756 * 6 1 2 21 21 C 1.53005 * 109.47128 * 184.99802 * 17 16 15 22 22 C 1.50704 * 109.47009 * 174.99549 * 21 17 16 23 23 H 1.08005 * 119.99916 * 0.02562 * 22 21 17 24 24 C 1.37880 * 119.99759 * 179.71902 * 22 21 17 25 25 N 1.31513 * 119.99861 * 180.27661 * 24 22 21 26 26 Si 1.86801 * 119.99997 * 0.28352 * 24 22 21 27 27 H 1.48492 * 109.47480 * 89.99404 * 26 24 22 28 28 H 1.48498 * 109.46692 * 209.99876 * 26 24 22 29 29 H 1.48501 * 109.46831 * 329.99239 * 26 24 22 30 30 C 1.47441 * 108.56851 * 335.91107 * 15 14 13 31 31 O 1.33974 * 108.75838 * 0.22812 * 7 6 5 32 32 H 1.09002 * 109.46923 * 59.99801 * 1 2 3 33 33 H 1.08995 * 109.47057 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47016 * 299.99841 * 1 2 3 35 35 H 1.09003 * 109.46967 * 239.99899 * 2 1 3 36 36 H 1.09002 * 109.46645 * 179.97438 * 3 2 1 37 37 H 1.09002 * 109.47362 * 299.99930 * 3 2 1 38 38 H 1.08994 * 109.47024 * 60.00164 * 3 2 1 39 39 H 1.08001 * 126.17190 * 0.05477 * 5 4 2 40 40 H 1.09008 * 109.46918 * 330.02158 * 8 7 6 41 41 H 1.09001 * 109.47154 * 210.02293 * 8 7 6 42 42 H 1.08993 * 109.47208 * 180.82200 * 10 9 8 43 43 H 1.09001 * 109.47179 * 300.82522 * 10 9 8 44 44 H 1.09000 * 109.46943 * 60.82335 * 10 9 8 45 45 H 1.09003 * 110.99211 * 324.05324 * 13 11 9 46 46 H 1.09000 * 110.99262 * 87.83408 * 13 11 9 47 47 H 1.09003 * 110.37065 * 278.24159 * 14 13 11 48 48 H 1.08996 * 110.37352 * 155.89915 * 14 13 11 49 49 H 1.08997 * 109.47347 * 170.84700 * 16 15 14 50 50 H 1.09003 * 109.46623 * 50.84439 * 16 15 14 51 51 H 1.08992 * 109.46848 * 54.99600 * 21 17 16 52 52 H 1.09000 * 109.46484 * 294.99470 * 21 17 16 53 53 H 0.97003 * 119.99949 * 180.02562 * 25 24 22 54 54 H 1.08999 * 109.89168 * 120.39162 * 30 15 14 55 55 H 1.08998 * 109.88752 * 241.57957 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.8076 -1.8070 1.2581 6 7 3.0275 -2.1190 2.5476 7 6 2.4122 -1.2504 3.2983 8 6 2.4045 -1.2420 4.8052 9 7 3.5324 -0.4391 5.2962 10 6 3.3667 0.9759 4.9380 11 6 3.7002 -0.5988 6.7469 12 1 2.7993 -0.2856 7.2744 13 6 4.9366 0.1940 7.2465 14 6 5.3249 -0.6009 8.5182 15 7 5.0646 -2.0149 8.1738 16 6 4.6102 -2.7683 9.3502 17 6 5.7667 -2.9125 10.3414 18 1 6.6215 -3.3653 9.8390 19 6 6.1444 -1.5844 10.8516 20 7 6.4371 -0.5609 11.2451 21 6 5.3308 -3.8018 11.5077 22 6 6.5052 -4.0445 12.4205 23 1 7.4661 -3.6077 12.1919 24 6 6.3512 -4.8189 13.5509 25 7 7.3746 -5.0261 14.3504 26 14 4.6890 -5.5738 13.9465 27 1 4.5916 -6.9148 13.3163 28 1 4.5435 -5.7067 15.4184 29 1 3.6103 -4.6997 13.4195 30 6 4.0581 -2.0583 7.0973 31 8 1.7828 -0.3689 2.5099 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 3.1301 1.4424 0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6767 1.9562 0.8900 39 1 3.1866 -2.3415 0.3995 40 1 2.4975 -2.2633 5.1747 41 1 1.4690 -0.8105 5.1613 42 1 4.2224 1.5452 5.3008 43 1 3.3001 1.0710 3.8542 44 1 2.4544 1.3614 5.3933 45 1 5.7400 0.1692 6.5103 46 1 4.6681 1.2210 7.4940 47 1 4.7045 -0.2952 9.3608 48 1 6.3798 -0.4546 8.7498 49 1 4.2720 -3.7569 9.0401 50 1 3.7873 -2.2357 9.8270 51 1 4.9675 -4.7543 11.1222 52 1 4.5345 -3.3072 12.0638 53 1 7.2664 -5.5713 15.1454 54 1 4.4725 -2.5589 6.2222 55 1 3.1688 -2.5856 7.4423 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229830185.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:42 Heat of formation + Delta-G solvation = 33.095465 kcal Electronic energy + Delta-G solvation = -31973.003807 eV Core-core repulsion = 27817.773197 eV Total energy + Delta-G solvation = -4155.230610 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 360.227 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -44.34208 -40.77512 -38.71580 -37.12865 -36.51539 -35.70797 -35.63019 -34.11033 -32.12245 -30.78047 -30.05950 -28.33395 -28.12698 -28.09662 -25.29006 -24.64925 -23.68914 -23.27151 -22.71772 -21.80765 -21.24531 -21.05274 -18.90624 -18.41903 -18.01159 -17.90580 -17.28291 -17.06198 -16.37312 -16.24911 -15.87480 -15.63906 -15.39195 -15.29843 -15.12485 -14.77537 -14.57316 -14.31671 -14.27763 -14.09973 -14.03993 -13.94068 -13.81057 -13.66681 -13.37165 -13.11719 -13.09473 -13.07245 -12.68302 -12.57819 -12.42117 -12.32317 -12.27187 -12.20366 -12.18130 -12.05301 -11.98092 -11.92548 -11.80692 -11.65331 -11.40708 -11.40052 -11.22998 -10.71702 -9.73744 -9.48558 -9.23949 -8.23382 -6.29111 0.42652 1.43779 1.46357 1.56618 1.59726 1.71268 1.98396 2.01345 2.42270 2.73088 3.01087 3.10270 3.12906 3.27175 3.46940 3.62492 3.75987 3.89293 3.99278 4.05775 4.10936 4.13322 4.16393 4.29097 4.32497 4.38090 4.39622 4.43632 4.49778 4.53332 4.60639 4.71086 4.72127 4.72345 4.82051 4.84706 4.87958 4.89164 4.91177 4.93999 4.96983 4.98230 5.08991 5.13784 5.15510 5.25378 5.28210 5.31505 5.35692 5.47847 5.64899 5.80867 5.93987 5.99040 6.11274 6.28312 6.76711 6.78982 6.82921 7.35210 8.93687 Molecular weight = 360.23amu Principal moments of inertia in cm(-1) A = 0.021416 B = 0.001655 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.129198 B =16912.290771 C =17658.088319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.008 4.008 3 C -0.147 4.147 4 C -0.036 4.036 5 C -0.062 4.062 6 N -0.493 5.493 7 C 0.188 3.812 8 C 0.151 3.849 9 N -0.533 5.533 10 C 0.025 3.975 11 C 0.073 3.927 12 H 0.066 0.934 13 C -0.110 4.110 14 C 0.042 3.958 15 N -0.534 5.534 16 C 0.065 3.935 17 C 0.022 3.978 18 H 0.114 0.886 19 C 0.253 3.747 20 N -0.507 5.507 21 C -0.001 4.001 22 C -0.532 4.532 23 H 0.026 0.974 24 C 0.002 3.998 25 N -0.955 5.955 26 Si 0.950 3.050 27 H -0.257 1.257 28 H -0.296 1.296 29 H -0.236 1.236 30 C 0.050 3.950 31 O -0.207 6.207 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.124 0.876 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.200 0.800 40 H 0.125 0.875 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.057 0.943 44 H 0.040 0.960 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.038 0.962 48 H 0.058 0.942 49 H 0.122 0.878 50 H 0.049 0.951 51 H 0.064 0.936 52 H 0.027 0.973 53 H 0.264 0.736 54 H 0.088 0.912 55 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.880 10.678 -33.171 40.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 C -0.204 4.204 4 C -0.089 4.089 5 C -0.200 4.200 6 N -0.223 5.223 7 C -0.019 4.019 8 C 0.023 3.977 9 N -0.259 5.259 10 C -0.123 4.123 11 C -0.035 4.035 12 H 0.084 0.916 13 C -0.148 4.148 14 C -0.087 4.087 15 N -0.259 5.259 16 C -0.064 4.064 17 C 0.000 4.000 18 H 0.132 0.868 19 C -0.063 4.063 20 N -0.184 5.184 21 C -0.040 4.040 22 C -0.570 4.570 23 H 0.044 0.956 24 C -0.195 4.195 25 N -0.595 5.595 26 Si 0.773 3.227 27 H -0.181 1.181 28 H -0.222 1.222 29 H -0.159 1.159 30 C -0.077 4.077 31 O -0.094 6.094 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.142 0.858 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.067 0.933 39 H 0.217 0.783 40 H 0.143 0.857 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.056 0.944 48 H 0.076 0.924 49 H 0.140 0.860 50 H 0.067 0.933 51 H 0.082 0.918 52 H 0.046 0.954 53 H 0.073 0.927 54 H 0.106 0.894 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.184 11.271 -32.569 38.967 hybrid contribution -1.431 0.423 1.237 1.938 sum -19.615 11.694 -31.332 38.771 Atomic orbital electron populations 1.21865 0.92900 1.02522 1.03102 1.19965 0.96919 0.96155 0.89587 1.21865 1.01237 0.94215 1.03104 1.24032 1.02060 0.98726 0.84101 1.23526 1.02931 0.98385 0.95153 1.70425 1.21420 1.27241 1.03171 1.26229 0.93487 0.86154 0.96070 1.20513 0.94232 1.01973 0.81025 1.61928 1.41182 1.09541 1.13273 1.22424 1.01495 0.87531 1.00835 1.22834 0.97808 0.96704 0.86185 0.91627 1.22696 0.97603 0.98455 0.96088 1.23096 1.00431 0.88161 0.96967 1.63547 1.42906 1.10936 1.08471 1.22440 0.93743 1.01113 0.89149 1.19102 1.00822 0.83870 0.96210 0.86810 1.29513 0.91606 0.94358 0.90798 1.80987 1.10663 1.15111 1.11667 1.19573 0.95699 0.96299 0.92416 1.21409 0.96603 1.30863 1.08090 0.95559 1.26066 1.01075 0.96647 0.95672 1.70098 1.33542 1.40828 1.15081 0.85663 0.79897 0.80119 0.77035 1.18119 1.22248 1.15864 1.22934 0.94367 0.95410 0.95002 1.84371 1.59075 1.48875 1.17071 0.89500 0.92419 0.93283 0.85785 0.92688 0.89461 0.93285 0.78275 0.85719 0.90175 0.90395 0.92461 0.94101 0.90214 0.90013 0.94395 0.92382 0.86041 0.93276 0.91765 0.95449 0.92697 0.89365 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.18 71.98 0.66 -0.35 16 2 C -0.01 -0.06 3.33 -11.54 -0.04 -0.10 16 3 C -0.15 -1.11 9.18 71.98 0.66 -0.45 16 4 C -0.04 -0.54 5.89 24.79 0.15 -0.40 16 5 C -0.06 -1.08 11.78 83.39 0.98 -0.10 16 6 N -0.49 -11.12 11.29 -303.83 -3.43 -14.55 16 7 C 0.19 3.65 6.91 88.34 0.61 4.26 16 8 C 0.15 2.27 5.46 85.56 0.47 2.74 16 9 N -0.53 -8.94 4.57 -894.68 -4.09 -13.03 16 10 C 0.03 0.37 9.16 127.69 1.17 1.54 16 11 C 0.07 1.23 2.64 46.09 0.12 1.35 16 12 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 13 C -0.11 -2.21 5.30 31.98 0.17 -2.04 16 14 C 0.04 1.09 4.73 86.77 0.41 1.50 16 15 N -0.53 -12.96 5.16 -885.58 -4.57 -17.53 16 16 C 0.06 1.60 4.26 86.30 0.37 1.97 16 17 C 0.02 0.76 2.42 -12.60 -0.03 0.72 16 18 H 0.11 4.00 8.14 -2.38 -0.02 3.98 16 19 C 0.25 10.19 10.44 89.45 0.93 11.13 16 20 N -0.51 -22.26 17.81 19.99 0.36 -21.91 16 21 C 0.00 -0.04 3.49 29.85 0.10 0.07 16 22 C -0.53 -29.09 9.15 25.60 0.23 -28.85 16 23 H 0.03 1.63 7.84 -2.91 -0.02 1.61 16 24 C 0.00 0.11 5.47 84.66 0.46 0.57 16 25 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 26 Si 0.95 41.56 27.47 68.60 1.88 43.45 16 27 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 28 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 29 H -0.24 -9.14 6.54 99.48 0.65 -8.49 16 30 C 0.05 0.93 5.31 86.64 0.46 1.39 16 31 O -0.21 -3.79 10.15 -3.76 -0.04 -3.83 16 32 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.12 0.49 8.11 -2.39 -0.02 0.47 16 36 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.05 0.48 8.14 -2.39 -0.02 0.47 16 39 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 40 H 0.12 1.73 6.87 -2.38 -0.02 1.71 16 41 H 0.08 0.92 8.12 -2.39 -0.02 0.90 16 42 H 0.08 1.14 6.92 -2.39 -0.02 1.12 16 43 H 0.06 0.96 6.77 -2.39 -0.02 0.94 16 44 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.08 1.45 8.01 -2.39 -0.02 1.43 16 47 H 0.04 1.07 6.72 -2.39 -0.02 1.05 16 48 H 0.06 1.82 6.94 -2.39 -0.02 1.80 16 49 H 0.12 2.39 8.03 -2.39 -0.02 2.38 16 50 H 0.05 1.16 7.85 -2.39 -0.02 1.14 16 51 H 0.06 2.29 7.58 -2.39 -0.02 2.27 16 52 H 0.03 1.10 7.19 -2.39 -0.02 1.08 16 53 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 54 H 0.09 1.79 7.86 -2.39 -0.02 1.77 16 55 H 0.08 1.13 7.55 -2.39 -0.02 1.11 16 Total: -1.00 -74.38 435.42 -0.90 -75.28 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.80 Total: 16.52 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 7.89 Total: -5.04 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -11.44 Total: -126.38 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -0.04 Total: -3.83 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.88 Total: 43.45 kcal Total: -74.38 -0.90 -75.28 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229830185.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.377 kcal (2) G-P(sol) polarization free energy of solvation -74.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds