Wall clock time and date at job start Tue Mar 31 2020 07:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47195 * 2 1 4 4 C 1.35488 * 126.98028 * 270.15554 * 3 2 1 5 5 C 1.50700 * 126.35041 * 359.97438 * 4 3 2 6 6 N 1.30525 * 107.30789 * 180.22452 * 4 3 2 7 7 N 1.28598 * 109.66952 * 359.77105 * 6 4 3 8 8 C 1.30521 * 109.67660 * 0.02562 * 7 6 4 9 9 C 1.50693 * 126.34872 * 179.97438 * 8 7 6 10 10 N 1.46894 * 109.47583 * 90.02019 * 9 8 7 11 11 C 1.46898 * 110.99888 * 293.95420 * 10 9 8 12 12 C 1.46901 * 111.00122 * 170.00041 * 10 9 8 13 13 H 1.08997 * 110.28790 * 60.67103 * 12 10 9 14 14 C 1.54257 * 110.32432 * 298.54666 * 12 10 9 15 15 C 1.54379 * 105.06256 * 241.00265 * 14 12 10 16 16 N 1.48562 * 104.69842 * 336.08765 * 15 14 12 17 17 C 1.46894 * 111.00344 * 159.09785 * 16 15 14 18 18 C 1.53003 * 109.47052 * 69.87193 * 17 16 15 19 19 H 1.08998 * 109.47621 * 305.00674 * 18 17 16 20 20 C 1.47208 * 109.46888 * 65.00115 * 18 17 16 21 21 N 9.69965 * 65.71446 * 92.56880 * 2 1 3 22 22 C 1.52998 * 109.47150 * 185.00222 * 18 17 16 23 23 C 1.50704 * 109.46928 * 175.00590 * 22 18 17 24 24 H 1.08004 * 120.00066 * 359.97438 * 23 22 18 25 25 C 1.37874 * 119.99797 * 180.02562 * 23 22 18 26 26 N 1.31520 * 120.00354 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00046 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47265 * 89.99624 * 27 25 23 29 29 H 1.48496 * 109.47438 * 210.00022 * 27 25 23 30 30 H 1.48507 * 109.47249 * 329.99951 * 27 25 23 31 31 C 1.48856 * 104.07618 * 39.46842 * 16 15 14 32 32 H 1.08997 * 109.47419 * 299.99813 * 1 2 3 33 33 H 1.09003 * 109.46902 * 60.00498 * 1 2 3 34 34 H 1.09005 * 109.46877 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.47305 * 239.99651 * 2 1 3 36 36 H 1.09009 * 109.46705 * 119.99885 * 2 1 3 37 37 H 1.08997 * 109.47364 * 270.25196 * 5 4 3 38 38 H 1.09008 * 109.46615 * 30.24871 * 5 4 3 39 39 H 1.09001 * 109.47220 * 150.24239 * 5 4 3 40 40 H 1.09008 * 109.46982 * 330.02022 * 9 8 7 41 41 H 1.08998 * 109.47103 * 210.02438 * 9 8 7 42 42 H 1.09002 * 109.47348 * 296.04408 * 11 10 9 43 43 H 1.08996 * 109.47414 * 56.04732 * 11 10 9 44 44 H 1.09000 * 109.46884 * 176.04403 * 11 10 9 45 45 H 1.08998 * 110.32238 * 122.10637 * 14 12 10 46 46 H 1.08997 * 110.41265 * 359.94164 * 14 12 10 47 47 H 1.09002 * 110.41258 * 94.92615 * 15 14 12 48 48 H 1.09002 * 110.41328 * 217.24846 * 15 14 12 49 49 H 1.09001 * 109.47519 * 189.87201 * 17 16 15 50 50 H 1.09003 * 109.46928 * 309.87844 * 17 16 15 51 51 H 1.09000 * 109.47039 * 294.99830 * 22 18 17 52 52 H 1.08998 * 109.47302 * 55.00619 * 22 18 17 53 53 H 0.96993 * 120.00206 * 180.02562 * 26 25 23 54 54 H 1.09003 * 110.39541 * 201.75499 * 31 16 15 55 55 H 1.08998 * 110.39292 * 79.33352 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2872 2.1506 -1.0823 5 6 2.1400 1.7442 -2.5260 6 7 2.7027 3.3073 -0.6430 7 7 2.7042 3.3067 0.6430 8 6 2.2904 2.1495 1.0825 9 6 2.1469 1.7416 2.5260 10 7 0.7964 2.0757 2.9974 11 6 0.5927 3.5302 3.0234 12 6 0.5381 1.4843 4.3171 13 1 1.2495 1.8674 5.0487 14 6 0.6241 -0.0540 4.2410 15 6 -0.7772 -0.5549 4.6517 16 7 -1.3464 0.5466 5.4701 17 6 -2.8117 0.4594 5.5241 18 6 -3.2199 -0.7533 6.3630 19 1 -2.7457 -1.6490 5.9619 20 6 -2.7901 -0.5529 7.7566 21 7 -2.4593 -0.3963 8.8324 22 6 -4.7404 -0.9170 6.3168 23 6 -5.1319 -2.1797 7.0403 24 1 -4.3722 -2.8032 7.4880 25 6 -6.4599 -2.5393 7.1298 26 7 -7.3851 -1.7802 6.5843 27 14 -6.9453 -4.1048 8.0260 28 1 -7.1881 -3.7999 9.4590 29 1 -8.1833 -4.6581 7.4210 30 1 -5.8500 -5.1010 7.9108 31 6 -0.9079 1.7834 4.7675 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5139 0.8901 37 1 3.0720 1.2999 -2.8753 38 1 1.3336 1.0164 -2.6181 39 1 1.9075 2.6221 -3.1288 40 1 2.8839 2.2727 3.1286 41 1 2.3085 0.6676 2.6179 42 1 1.2730 3.9795 3.7470 43 1 0.7906 3.9426 2.0340 44 1 -0.4365 3.7479 3.3086 45 1 1.3776 -0.4259 4.9353 46 1 0.8569 -0.3719 3.2247 47 1 -1.3923 -0.7297 3.7690 48 1 -0.6966 -1.4663 5.2443 49 1 -3.2133 1.3660 5.9767 50 1 -3.2068 0.3518 4.5139 51 1 -5.2128 -0.0609 6.7985 52 1 -5.0681 -0.9765 5.2789 53 1 -8.3194 -2.0331 6.6476 54 1 -0.9256 2.6340 5.4490 55 1 -1.5434 1.9747 3.9029 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229830290.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:54 Heat of formation + Delta-G solvation = 89.896890 kcal Electronic energy + Delta-G solvation = -32797.806651 eV Core-core repulsion = 28677.331887 eV Total energy + Delta-G solvation = -4120.474764 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 360.233 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -44.13199 -40.57655 -38.53974 -37.12741 -36.69443 -35.54401 -34.10147 -33.32800 -31.64935 -31.43542 -30.24775 -28.81296 -28.26156 -27.63602 -25.39635 -24.84463 -24.29443 -23.54384 -22.20180 -21.84560 -21.40283 -20.72858 -18.55579 -18.11451 -18.02154 -17.44868 -17.14699 -16.97676 -16.53894 -16.12766 -15.80258 -15.62795 -15.31827 -15.05972 -14.74956 -14.58638 -14.55908 -14.30410 -14.09957 -13.93279 -13.84379 -13.69336 -13.56076 -13.47736 -13.39167 -13.16020 -13.03140 -12.97167 -12.88215 -12.69247 -12.55323 -12.42158 -12.30561 -12.25244 -12.14149 -12.03407 -11.95028 -11.85151 -11.58137 -11.35383 -11.25163 -11.10453 -11.06564 -10.55009 -10.06675 -9.44224 -9.36807 -8.18672 -6.26829 0.79773 1.40573 1.43284 1.51930 1.57579 1.80286 2.07732 2.14985 2.42035 2.71444 3.16392 3.21126 3.33766 3.38410 3.52205 3.61089 3.73403 3.77732 3.87980 4.11187 4.15503 4.16594 4.25273 4.32620 4.37283 4.39511 4.46148 4.50936 4.59389 4.65062 4.68270 4.70028 4.74968 4.77349 4.80385 4.85633 4.92793 4.95432 4.98455 4.99185 5.03707 5.08879 5.10370 5.14229 5.23894 5.29843 5.37452 5.47406 5.61639 5.79439 5.80161 5.83119 6.00180 6.05479 6.13835 6.22521 6.84260 6.94641 7.41762 7.76436 8.92193 Molecular weight = 360.23amu Principal moments of inertia in cm(-1) A = 0.015792 B = 0.001952 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.615751 B =14343.561951 C =15278.034354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.096 3.904 3 N -0.457 5.457 4 C 0.176 3.824 5 C -0.066 4.066 6 N -0.348 5.348 7 N -0.334 5.334 8 C 0.186 3.814 9 C 0.141 3.859 10 N -0.526 5.526 11 C 0.028 3.972 12 C 0.088 3.912 13 H 0.055 0.945 14 C -0.110 4.110 15 C 0.030 3.970 16 N -0.527 5.527 17 C 0.065 3.935 18 C 0.026 3.974 19 H 0.118 0.882 20 C 0.266 3.734 21 N -0.514 5.514 22 C 0.038 3.962 23 C -0.536 4.536 24 H 0.055 0.945 25 C 0.011 3.989 26 N -0.924 5.924 27 Si 0.947 3.053 28 H -0.286 1.286 29 H -0.279 1.279 30 H -0.262 1.262 31 C 0.046 3.954 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.120 0.880 42 H 0.032 0.968 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.058 0.942 48 H 0.079 0.921 49 H 0.071 0.929 50 H 0.071 0.929 51 H -0.001 1.001 52 H 0.035 0.965 53 H 0.264 0.736 54 H 0.073 0.927 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.699 1.950 -20.456 29.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.024 4.024 3 N -0.147 5.147 4 C -0.093 4.093 5 C -0.124 4.124 6 N -0.189 5.189 7 N -0.175 5.175 8 C -0.083 4.083 9 C 0.011 3.989 10 N -0.252 5.252 11 C -0.121 4.121 12 C -0.021 4.021 13 H 0.073 0.927 14 C -0.148 4.148 15 C -0.098 4.098 16 N -0.251 5.251 17 C -0.065 4.065 18 C 0.004 3.996 19 H 0.135 0.865 20 C -0.050 4.050 21 N -0.192 5.192 22 C -0.001 4.001 23 C -0.575 4.575 24 H 0.073 0.927 25 C -0.188 4.188 26 N -0.564 5.564 27 Si 0.773 3.227 28 H -0.212 1.212 29 H -0.204 1.204 30 H -0.186 1.186 31 C -0.083 4.083 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.139 0.861 36 H 0.130 0.870 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.138 0.862 42 H 0.050 0.950 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.114 0.886 47 H 0.077 0.923 48 H 0.097 0.903 49 H 0.089 0.911 50 H 0.089 0.911 51 H 0.017 0.983 52 H 0.054 0.946 53 H 0.073 0.927 54 H 0.091 0.909 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 21.369 3.367 -18.634 28.551 hybrid contribution -1.167 -1.182 0.196 1.672 sum 20.202 2.185 -18.438 27.438 Atomic orbital electron populations 1.22125 0.93165 1.04365 1.02765 1.22282 0.96362 0.76891 1.06894 1.46364 1.48039 1.15058 1.05260 1.25512 1.00917 0.88587 0.94264 1.20416 1.04994 1.03856 0.83177 1.74148 1.21482 1.19769 1.03496 1.74124 1.20583 1.19063 1.03703 1.24709 1.01738 0.88952 0.92900 1.20434 0.90884 1.03008 0.84567 1.62081 1.25096 1.11797 1.26203 1.22339 1.01652 0.86910 1.01155 1.22290 0.96020 0.95731 0.88010 0.92714 1.22414 0.96825 0.92618 1.02914 1.23197 0.95534 0.94951 0.96101 1.65471 1.08878 1.03369 1.47427 1.22172 0.88119 0.96938 0.99227 1.19120 0.98047 1.00305 0.82131 0.86470 1.29373 0.89972 0.90671 0.95005 1.80996 1.12898 1.11493 1.13821 1.18994 0.87853 0.95571 0.97681 1.21540 0.92425 1.08417 1.35079 0.92701 1.25717 0.96935 0.99860 0.96320 1.70032 1.01027 1.39469 1.45833 0.85709 0.78190 0.80410 0.78369 1.21196 1.20410 1.18636 1.23099 0.95074 0.93151 0.96928 0.92260 0.92754 0.88424 0.86120 0.86989 0.87978 0.88110 0.88836 0.91436 0.86215 0.94959 0.92679 0.90826 0.90149 0.88601 0.92330 0.90288 0.91066 0.91097 0.98293 0.94645 0.92749 0.90889 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.24 71.98 0.74 -0.46 16 2 C 0.10 0.54 6.40 86.38 0.55 1.09 16 3 N -0.46 -6.43 2.75 -504.02 -1.38 -7.82 16 4 C 0.18 3.01 8.03 137.98 1.11 4.11 16 5 C -0.07 -0.48 10.06 71.24 0.72 0.23 16 6 N -0.35 -9.02 12.21 -50.15 -0.61 -9.63 16 7 N -0.33 -8.78 11.39 -50.16 -0.57 -9.35 16 8 C 0.19 3.49 6.66 137.97 0.92 4.41 16 9 C 0.14 1.94 5.09 85.56 0.44 2.38 16 10 N -0.53 -8.01 4.54 -896.37 -4.07 -12.08 16 11 C 0.03 0.50 9.13 127.69 1.17 1.67 16 12 C 0.09 1.36 2.79 45.81 0.13 1.49 16 13 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 14 C -0.11 -1.41 6.00 31.49 0.19 -1.22 16 15 C 0.03 0.54 5.73 86.45 0.50 1.03 16 16 N -0.53 -12.27 5.08 -880.66 -4.47 -16.75 16 17 C 0.06 1.77 4.18 86.31 0.36 2.13 16 18 C 0.03 0.89 2.22 -12.60 -0.03 0.87 16 19 H 0.12 3.67 7.05 -2.39 -0.02 3.65 16 20 C 0.27 10.79 13.67 89.44 1.22 12.01 16 21 N -0.51 -23.00 18.54 20.01 0.37 -22.63 16 22 C 0.04 1.71 4.42 29.85 0.13 1.84 16 23 C -0.54 -27.86 8.60 25.60 0.22 -27.64 16 24 H 0.05 2.81 7.59 -2.91 -0.02 2.79 16 25 C 0.01 0.57 5.46 84.65 0.46 1.03 16 26 N -0.92 -52.41 13.29 21.45 0.28 -52.13 16 27 Si 0.95 42.71 29.54 68.60 2.03 44.74 16 28 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 29 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 30 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 31 C 0.05 0.89 4.92 86.39 0.42 1.31 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 35 H 0.12 0.08 7.82 -2.39 -0.02 0.06 16 36 H 0.11 0.29 7.19 -2.38 -0.02 0.27 16 37 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.10 0.27 7.87 -2.38 -0.02 0.25 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 1.00 8.12 -2.38 -0.02 0.98 16 41 H 0.12 1.01 5.29 -2.39 -0.01 1.00 16 42 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.05 1.24 6.54 -2.39 -0.02 1.22 16 44 H 0.07 1.29 6.87 -2.39 -0.02 1.28 16 45 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.10 0.83 6.63 -2.39 -0.02 0.81 16 47 H 0.06 0.98 7.82 -2.39 -0.02 0.96 16 48 H 0.08 1.51 7.63 -2.39 -0.02 1.49 16 49 H 0.07 2.06 8.13 -2.39 -0.02 2.04 16 50 H 0.07 1.74 7.88 -2.39 -0.02 1.72 16 51 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 52 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 53 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 54 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 55 H 0.06 1.15 7.52 -2.39 -0.02 1.13 16 Total: -1.00 -74.28 440.07 1.68 -72.59 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 0.87 Total: 6.73 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 9.24 Total: 6.30 kcal Atomic # 7 Polarization: -119.92 SS G_CDS: -10.45 Total: -130.37 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -74.28 1.68 -72.59 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229830290.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.491 kcal (2) G-P(sol) polarization free energy of solvation -74.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds