Wall clock time and date at job start Tue Mar 31 2020 06:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31646 * 1 3 3 Si 1.86805 * 120.00154 * 2 1 4 4 H 1.48493 * 109.47051 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46881 * 299.99861 * 3 2 1 6 6 H 1.48494 * 109.47097 * 59.99737 * 3 2 1 7 7 C 1.38688 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00037 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99831 * 359.97438 * 7 2 1 10 10 C 1.76200 * 99.99947 * 174.89949 * 9 7 2 11 11 C 1.38994 * 120.12564 * 6.87298 * 10 9 7 12 12 C 1.38078 * 119.97825 * 179.72094 * 11 10 9 13 13 C 1.38400 * 120.22597 * 0.28337 * 12 11 10 14 14 C 1.38217 * 120.25146 * 359.97438 * 13 12 11 15 15 C 1.38672 * 120.02034 * 0.02562 * 14 13 12 16 16 N 1.39936 * 120.11848 * 179.97438 * 15 14 13 17 17 C 1.34782 * 119.99718 * 325.58071 * 16 15 14 18 18 O 1.21300 * 119.99679 * 4.03498 * 17 16 15 19 19 C 1.50696 * 120.00330 * 184.04023 * 17 16 15 20 20 N 1.46897 * 109.47621 * 179.97438 * 19 17 16 21 21 C 1.48622 * 110.99612 * 288.87375 * 20 19 17 22 22 C 1.55336 * 106.99395 * 233.78142 * 21 20 19 23 23 C 1.53645 * 101.84819 * 337.43978 * 22 21 20 24 24 H 1.08997 * 111.07505 * 281.65824 * 23 22 21 25 25 C 1.51916 * 115.85765 * 153.83187 * 23 22 21 26 26 C 1.53705 * 107.28013 * 184.70969 * 25 23 22 27 27 C 1.52575 * 111.48854 * 58.11425 * 26 25 23 28 28 C 1.52360 * 111.51794 * 305.46579 * 27 26 25 29 29 C 1.45828 * 111.00238 * 169.99906 * 20 19 17 30 30 H 1.09001 * 109.25339 * 35.25340 * 29 20 19 31 31 H 0.96997 * 120.00086 * 0.02562 * 1 2 3 32 32 H 1.08000 * 120.00828 * 0.02562 * 11 10 9 33 33 H 1.07999 * 119.88613 * 180.25550 * 12 11 10 34 34 H 1.07998 * 119.87113 * 179.97438 * 13 12 11 35 35 H 1.08001 * 119.98705 * 180.02562 * 14 13 12 36 36 H 0.97002 * 120.00475 * 145.57092 * 16 15 14 37 37 H 1.09008 * 109.46750 * 299.99968 * 19 17 16 38 38 H 1.09007 * 109.47175 * 59.98997 * 19 17 16 39 39 H 1.09001 * 109.92849 * 353.11310 * 21 20 19 40 40 H 1.09000 * 109.93021 * 114.44736 * 21 20 19 41 41 H 1.08997 * 110.95489 * 219.30789 * 22 21 20 42 42 H 1.08997 * 110.98529 * 95.59576 * 22 21 20 43 43 H 1.09003 * 109.89387 * 304.15388 * 25 23 22 44 44 H 1.09003 * 109.89739 * 65.26588 * 25 23 22 45 45 H 1.09000 * 109.07699 * 178.62875 * 26 25 23 46 46 H 1.08997 * 109.07501 * 297.66208 * 26 25 23 47 47 H 1.09000 * 109.10508 * 65.64745 * 27 26 25 48 48 H 1.09005 * 109.09652 * 184.73201 * 27 26 25 49 49 H 1.09008 * 109.04496 * 297.38800 * 28 27 26 50 50 H 1.09003 * 109.99066 * 176.76914 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2505 1.6178 0.0000 4 1 3.7104 1.3464 -0.0006 5 1 1.8918 2.3964 -1.2125 6 1 1.8918 2.3965 1.2124 7 6 2.0100 -1.2011 0.0005 8 1 3.0899 -1.2010 0.0010 9 16 1.1289 -2.7270 0.0019 10 6 2.4727 -3.8563 -0.1521 11 6 3.7824 -3.3949 -0.0892 12 6 4.8331 -4.2833 -0.2045 13 6 4.5875 -5.6328 -0.3886 14 6 3.2889 -6.1011 -0.4580 15 6 2.2259 -5.2180 -0.3435 16 7 0.9103 -5.6899 -0.4139 17 6 0.6083 -6.7257 -1.2217 18 8 1.4883 -7.2958 -1.8316 19 6 -0.8226 -7.1754 -1.3672 20 7 -0.8868 -8.3115 -2.2962 21 6 -0.6238 -7.8737 -3.6919 22 6 -1.8156 -8.3700 -4.5557 23 6 -2.3605 -9.5281 -3.7057 24 1 -1.7472 -10.4217 -3.8216 25 6 -3.8332 -9.8511 -3.8922 26 6 -4.1931 -10.9451 -2.8743 27 6 -3.9053 -10.4952 -1.4451 28 6 -2.4625 -10.0330 -1.2845 29 6 -2.2106 -8.9230 -2.2834 30 1 -2.9635 -8.1474 -2.1432 31 1 -0.4850 0.8400 -0.0004 32 1 3.9780 -2.3426 0.0548 33 1 5.8501 -3.9238 -0.1512 34 1 5.4136 -6.3225 -0.4785 35 1 3.1021 -7.1551 -0.6014 36 1 0.2158 -5.2716 0.1187 37 1 -1.2088 -7.4790 -0.3941 38 1 -1.4240 -6.3538 -1.7564 39 1 -0.5614 -6.7863 -3.7347 40 1 0.3052 -8.3163 -4.0514 41 1 -1.4715 -8.7272 -5.5263 42 1 -2.5647 -7.5871 -4.6738 43 1 -4.4344 -8.9608 -3.7080 44 1 -4.0079 -10.2148 -4.9048 45 1 -5.2529 -11.1826 -2.9664 46 1 -3.6078 -11.8389 -3.0901 47 1 -4.5689 -9.6687 -1.1908 48 1 -4.0939 -11.3259 -0.7649 49 1 -1.7958 -10.8715 -1.4862 50 1 -2.2998 -9.6643 -0.2717 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230113801.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:02 Heat of formation + Delta-G solvation = -13.154409 kcal Electronic energy + Delta-G solvation = -29631.012887 eV Core-core repulsion = 25748.403757 eV Total energy + Delta-G solvation = -3882.609130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.68081 -39.70105 -37.72897 -35.94498 -34.25562 -32.87411 -32.75811 -30.47234 -30.28302 -29.00627 -28.61042 -26.21133 -25.85312 -22.95189 -22.45142 -22.05782 -21.43347 -20.83880 -20.09814 -19.71307 -18.35023 -16.88676 -16.75545 -16.15235 -15.92174 -15.62071 -15.10052 -15.05330 -14.86557 -14.63496 -14.15836 -13.98171 -13.91291 -13.76442 -13.44294 -13.11264 -12.94947 -12.84321 -12.68369 -12.47070 -12.17981 -12.07854 -11.67872 -11.46856 -11.37699 -11.35496 -11.27711 -11.25114 -11.04868 -10.91091 -10.78012 -10.62803 -10.40204 -10.11490 -10.03087 -9.74334 -9.56451 -9.33049 -8.78961 -8.63869 -8.39382 -7.67795 -6.54291 -6.53235 -4.24835 1.89630 2.10771 2.93189 3.02527 3.08051 3.16241 3.21850 3.37534 3.82989 3.96925 4.25285 4.41608 4.45560 4.53974 4.75074 4.81965 4.88920 4.91708 4.95758 5.09616 5.13464 5.15264 5.20348 5.23311 5.25919 5.27484 5.37996 5.55162 5.58978 5.66197 5.66700 5.69308 5.77259 5.84034 5.86541 5.90943 5.93387 5.96678 6.03357 6.16856 6.21195 6.23560 6.25561 6.59428 6.78121 6.86651 6.93360 6.96955 7.15383 7.23029 7.44873 7.70336 7.82927 8.12645 8.50114 8.94761 10.53103 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.013031 B = 0.002350 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.142436 B =11910.860524 C =13194.161606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.077 3.923 3 Si 0.925 3.075 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.095 0.905 9 S 0.030 5.970 10 C -0.103 4.103 11 C -0.131 4.131 12 C -0.115 4.115 13 C -0.149 4.149 14 C -0.102 4.102 15 C 0.125 3.875 16 N -0.661 5.661 17 C 0.513 3.487 18 O -0.510 6.510 19 C 0.031 3.969 20 N -0.500 5.500 21 C 0.050 3.950 22 C -0.137 4.137 23 C -0.094 4.094 24 H 0.086 0.914 25 C -0.108 4.108 26 C -0.119 4.119 27 C -0.117 4.117 28 C -0.103 4.103 29 C 0.070 3.930 30 H 0.046 0.954 31 H 0.272 0.728 32 H 0.138 0.862 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.131 0.869 36 H 0.409 0.591 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.069 0.931 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.218 -18.045 -4.203 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.133 4.133 3 Si 0.750 3.250 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.691 4.691 8 H 0.113 0.887 9 S 0.284 5.716 10 C -0.221 4.221 11 C -0.157 4.157 12 C -0.136 4.136 13 C -0.172 4.172 14 C -0.124 4.124 15 C 0.023 3.977 16 N -0.307 5.307 17 C 0.299 3.701 18 O -0.384 6.384 19 C -0.100 4.100 20 N -0.224 5.224 21 C -0.077 4.077 22 C -0.175 4.175 23 C -0.113 4.113 24 H 0.105 0.895 25 C -0.146 4.146 26 C -0.156 4.156 27 C -0.155 4.155 28 C -0.141 4.141 29 C -0.039 4.039 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.155 0.845 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.149 0.851 36 H 0.245 0.755 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.823 -18.697 -4.381 20.735 hybrid contribution 0.908 2.233 0.004 2.411 sum -6.915 -16.463 -4.377 18.385 Atomic orbital electron populations 1.70001 1.06074 1.28131 1.45773 1.25088 0.95167 0.99625 0.93438 0.86000 0.79871 0.81000 0.78129 1.19136 1.20281 1.20268 1.23309 0.95938 0.90477 1.59358 0.88726 1.83074 1.06195 0.97732 1.84592 1.22522 1.00561 0.95704 1.03274 1.21285 0.91031 1.00642 1.02717 1.20965 0.98200 0.93464 1.00973 1.20760 0.95878 0.95400 1.05202 1.20978 0.91388 0.99383 1.00606 1.17136 0.83545 0.90841 1.06136 1.43350 1.09348 1.33778 1.44204 1.20489 0.91084 0.79688 0.78817 1.90666 1.48719 1.53801 1.45231 1.22159 0.94138 0.94184 0.99525 1.62979 1.27876 1.25703 1.05807 1.23202 0.98601 0.99260 0.86609 1.22673 0.97992 0.97882 0.98995 1.22061 0.96401 0.98493 0.94363 0.89548 1.21438 0.95098 0.99006 0.99047 1.21541 1.01030 0.98483 0.94582 1.21299 0.96511 1.01007 0.96703 1.21031 0.96352 0.97972 0.98725 1.22065 0.89403 0.96098 0.96292 0.93615 0.91774 0.84478 0.87129 0.87027 0.85127 0.75517 0.87934 0.91232 0.92721 0.89572 0.90682 0.91411 0.91777 0.91645 0.92103 0.92032 0.92265 0.91705 0.91197 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.77 13.22 55.48 0.73 -23.04 16 2 C 0.08 2.02 5.49 -17.46 -0.10 1.93 16 3 Si 0.92 20.22 29.55 -169.99 -5.02 15.20 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.54 -14.38 9.07 30.90 0.28 -14.10 16 8 H 0.10 2.42 4.83 -52.49 -0.25 2.17 16 9 S 0.03 0.73 20.53 -107.50 -2.21 -1.48 16 10 C -0.10 -2.27 6.12 -38.75 -0.24 -2.51 16 11 C -0.13 -2.76 9.25 -39.36 -0.36 -3.12 16 12 C -0.12 -2.10 10.03 -39.58 -0.40 -2.49 16 13 C -0.15 -2.62 10.04 -39.53 -0.40 -3.02 16 14 C -0.10 -1.93 8.69 -39.43 -0.34 -2.27 16 15 C 0.13 2.49 6.32 -83.45 -0.53 1.96 16 16 N -0.66 -11.32 5.03 -9.70 -0.05 -11.36 16 17 C 0.51 8.28 7.41 -10.99 -0.08 8.20 16 18 O -0.51 -9.64 13.03 5.54 0.07 -9.57 16 19 C 0.03 0.39 5.03 -4.98 -0.03 0.36 16 20 N -0.50 -6.13 4.79 -225.40 -1.08 -7.21 16 21 C 0.05 0.62 5.74 -1.63 -0.01 0.61 16 22 C -0.14 -1.29 6.57 -25.16 -0.17 -1.46 16 23 C -0.09 -0.83 2.60 -89.62 -0.23 -1.06 16 24 H 0.09 0.81 8.12 -51.93 -0.42 0.39 16 25 C -0.11 -0.77 5.65 -26.92 -0.15 -0.93 16 26 C -0.12 -0.78 5.84 -26.58 -0.16 -0.94 16 27 C -0.12 -0.82 5.80 -27.28 -0.16 -0.98 16 28 C -0.10 -0.89 5.85 -27.85 -0.16 -1.05 16 29 C 0.07 0.69 1.73 -67.87 -0.12 0.57 16 30 H 0.05 0.45 7.60 -51.93 -0.39 0.06 16 31 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.14 2.99 4.95 -52.49 -0.26 2.73 16 33 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 34 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.13 2.45 6.19 -52.49 -0.32 2.13 16 36 H 0.41 6.39 7.95 -40.82 -0.32 6.07 16 37 H 0.10 1.06 8.08 -51.92 -0.42 0.64 16 38 H 0.07 0.81 7.90 -51.93 -0.41 0.40 16 39 H 0.05 0.73 7.40 -51.93 -0.38 0.34 16 40 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.47 7.99 -51.93 -0.41 0.06 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.65 8.12 -51.92 -0.42 0.23 16 50 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 401.57 15.07 6.05 6.05 Total: -1.00 -30.00 401.57 -12.66 -42.66 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -7.82 Total: 9.04 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -3.34 Total: -20.30 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: -0.40 Total: -41.61 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.07 Total: -9.57 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.21 Total: -1.48 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.00 -12.66 -42.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230113801.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.508 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds