Wall clock time and date at job start Tue Mar 31 2020 06:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31646 * 1 3 3 Si 1.86805 * 120.00154 * 2 1 4 4 H 1.48493 * 109.47051 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46881 * 299.99861 * 3 2 1 6 6 H 1.48494 * 109.47097 * 59.99737 * 3 2 1 7 7 C 1.38688 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00037 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99831 * 359.97438 * 7 2 1 10 10 C 1.76200 * 99.99947 * 174.89949 * 9 7 2 11 11 C 1.38994 * 120.12564 * 6.87298 * 10 9 7 12 12 C 1.38078 * 119.97825 * 179.72094 * 11 10 9 13 13 C 1.38400 * 120.22597 * 0.28337 * 12 11 10 14 14 C 1.38217 * 120.25146 * 359.97438 * 13 12 11 15 15 C 1.38672 * 120.02034 * 0.02562 * 14 13 12 16 16 N 1.39936 * 120.11848 * 179.97438 * 15 14 13 17 17 C 1.34782 * 119.99718 * 325.58071 * 16 15 14 18 18 O 1.21300 * 119.99679 * 4.03498 * 17 16 15 19 19 C 1.50696 * 120.00330 * 184.04023 * 17 16 15 20 20 N 1.46897 * 109.47621 * 179.97438 * 19 17 16 21 21 C 1.48622 * 110.99612 * 288.87375 * 20 19 17 22 22 C 1.55336 * 106.99395 * 233.78142 * 21 20 19 23 23 C 1.53645 * 101.84819 * 337.43978 * 22 21 20 24 24 H 1.08997 * 111.07505 * 281.65824 * 23 22 21 25 25 C 1.51916 * 115.85765 * 153.83187 * 23 22 21 26 26 C 1.53705 * 107.28013 * 184.70969 * 25 23 22 27 27 C 1.52575 * 111.48854 * 58.11425 * 26 25 23 28 28 C 1.52360 * 111.51794 * 305.46579 * 27 26 25 29 29 C 1.45828 * 111.00238 * 169.99906 * 20 19 17 30 30 H 1.09001 * 109.25339 * 35.25340 * 29 20 19 31 31 H 0.96997 * 120.00086 * 0.02562 * 1 2 3 32 32 H 1.08000 * 120.00828 * 0.02562 * 11 10 9 33 33 H 1.07999 * 119.88613 * 180.25550 * 12 11 10 34 34 H 1.07998 * 119.87113 * 179.97438 * 13 12 11 35 35 H 1.08001 * 119.98705 * 180.02562 * 14 13 12 36 36 H 0.97002 * 120.00475 * 145.57092 * 16 15 14 37 37 H 1.09008 * 109.46750 * 299.99968 * 19 17 16 38 38 H 1.09007 * 109.47175 * 59.98997 * 19 17 16 39 39 H 1.09001 * 109.92849 * 353.11310 * 21 20 19 40 40 H 1.09000 * 109.93021 * 114.44736 * 21 20 19 41 41 H 1.08997 * 110.95489 * 219.30789 * 22 21 20 42 42 H 1.08997 * 110.98529 * 95.59576 * 22 21 20 43 43 H 1.09003 * 109.89387 * 304.15388 * 25 23 22 44 44 H 1.09003 * 109.89739 * 65.26588 * 25 23 22 45 45 H 1.09000 * 109.07699 * 178.62875 * 26 25 23 46 46 H 1.08997 * 109.07501 * 297.66208 * 26 25 23 47 47 H 1.09000 * 109.10508 * 65.64745 * 27 26 25 48 48 H 1.09005 * 109.09652 * 184.73201 * 27 26 25 49 49 H 1.09008 * 109.04496 * 297.38800 * 28 27 26 50 50 H 1.09003 * 109.99066 * 176.76914 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2505 1.6178 0.0000 4 1 3.7104 1.3464 -0.0006 5 1 1.8918 2.3964 -1.2125 6 1 1.8918 2.3965 1.2124 7 6 2.0100 -1.2011 0.0005 8 1 3.0899 -1.2010 0.0010 9 16 1.1289 -2.7270 0.0019 10 6 2.4727 -3.8563 -0.1521 11 6 3.7824 -3.3949 -0.0892 12 6 4.8331 -4.2833 -0.2045 13 6 4.5875 -5.6328 -0.3886 14 6 3.2889 -6.1011 -0.4580 15 6 2.2259 -5.2180 -0.3435 16 7 0.9103 -5.6899 -0.4139 17 6 0.6083 -6.7257 -1.2217 18 8 1.4883 -7.2958 -1.8316 19 6 -0.8226 -7.1754 -1.3672 20 7 -0.8868 -8.3115 -2.2962 21 6 -0.6238 -7.8737 -3.6919 22 6 -1.8156 -8.3700 -4.5557 23 6 -2.3605 -9.5281 -3.7057 24 1 -1.7472 -10.4217 -3.8216 25 6 -3.8332 -9.8511 -3.8922 26 6 -4.1931 -10.9451 -2.8743 27 6 -3.9053 -10.4952 -1.4451 28 6 -2.4625 -10.0330 -1.2845 29 6 -2.2106 -8.9230 -2.2834 30 1 -2.9635 -8.1474 -2.1432 31 1 -0.4850 0.8400 -0.0004 32 1 3.9780 -2.3426 0.0548 33 1 5.8501 -3.9238 -0.1512 34 1 5.4136 -6.3225 -0.4785 35 1 3.1021 -7.1551 -0.6014 36 1 0.2158 -5.2716 0.1187 37 1 -1.2088 -7.4790 -0.3941 38 1 -1.4240 -6.3538 -1.7564 39 1 -0.5614 -6.7863 -3.7347 40 1 0.3052 -8.3163 -4.0514 41 1 -1.4715 -8.7272 -5.5263 42 1 -2.5647 -7.5871 -4.6738 43 1 -4.4344 -8.9608 -3.7080 44 1 -4.0079 -10.2148 -4.9048 45 1 -5.2529 -11.1826 -2.9664 46 1 -3.6078 -11.8389 -3.0901 47 1 -4.5689 -9.6687 -1.1908 48 1 -4.0939 -11.3259 -0.7649 49 1 -1.7958 -10.8715 -1.4862 50 1 -2.2998 -9.6643 -0.2717 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230113801.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:00 Heat of formation + Delta-G solvation = -29.357557 kcal Electronic energy + Delta-G solvation = -29631.715508 eV Core-core repulsion = 25748.403757 eV Total energy + Delta-G solvation = -3883.311751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.71904 -40.87299 -39.16075 -36.75489 -35.69653 -34.73274 -33.67801 -31.90587 -31.36921 -30.21238 -29.40425 -27.87847 -27.20999 -23.93273 -23.69814 -23.48522 -22.10789 -21.90529 -20.96545 -20.78312 -20.11892 -18.39268 -18.06510 -17.58916 -17.07240 -16.99673 -16.51629 -16.18089 -15.82624 -15.64909 -15.42238 -15.20593 -14.93750 -14.66720 -14.62018 -14.59027 -14.34608 -14.05409 -13.69224 -13.49769 -13.39100 -13.17365 -13.00874 -12.86085 -12.79536 -12.72447 -12.25995 -12.17799 -12.10598 -12.08178 -11.66615 -11.65219 -11.42025 -11.37861 -11.29749 -11.21833 -10.80240 -10.72050 -10.64705 -10.34718 -9.35725 -9.20736 -8.50432 -8.36603 -6.24416 0.37875 0.52901 1.26284 1.36449 1.45005 1.57765 1.62111 2.02109 2.16783 2.84205 2.87099 2.97445 3.15307 3.49662 3.59891 3.80278 3.82637 4.05764 4.08265 4.18206 4.20758 4.26292 4.29640 4.30367 4.44439 4.47745 4.50838 4.55641 4.56727 4.66975 4.70456 4.71294 4.78676 4.92626 5.01222 5.03173 5.05717 5.15140 5.22313 5.29622 5.32492 5.33898 5.39023 5.42000 5.42632 5.48914 5.58260 5.64710 5.71040 5.85062 6.06254 6.12108 6.20940 6.47298 6.95218 7.15318 8.58511 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.013031 B = 0.002350 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.142436 B =11910.860524 C =13194.161606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.026 3.974 3 Si 0.992 3.008 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.563 4.563 8 H 0.096 0.904 9 S -0.012 6.012 10 C -0.125 4.125 11 C -0.145 4.145 12 C -0.113 4.113 13 C -0.132 4.132 14 C -0.113 4.113 15 C 0.125 3.875 16 N -0.661 5.661 17 C 0.513 3.487 18 O -0.538 6.538 19 C 0.039 3.961 20 N -0.514 5.514 21 C 0.049 3.951 22 C -0.130 4.130 23 C -0.088 4.088 24 H 0.080 0.920 25 C -0.104 4.104 26 C -0.117 4.117 27 C -0.114 4.114 28 C -0.101 4.101 29 C 0.068 3.932 30 H 0.048 0.952 31 H 0.276 0.724 32 H 0.125 0.875 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.134 0.866 36 H 0.414 0.586 37 H 0.126 0.874 38 H 0.078 0.922 39 H 0.037 0.963 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.074 0.926 49 H 0.061 0.939 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.959 -19.260 -4.437 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.180 4.180 3 Si 0.814 3.186 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.710 4.710 8 H 0.114 0.886 9 S 0.239 5.761 10 C -0.242 4.242 11 C -0.171 4.171 12 C -0.134 4.134 13 C -0.154 4.154 14 C -0.134 4.134 15 C 0.023 3.977 16 N -0.307 5.307 17 C 0.301 3.699 18 O -0.414 6.414 19 C -0.093 4.093 20 N -0.238 5.238 21 C -0.078 4.078 22 C -0.168 4.168 23 C -0.107 4.107 24 H 0.098 0.902 25 C -0.142 4.142 26 C -0.155 4.155 27 C -0.152 4.152 28 C -0.139 4.139 29 C -0.041 4.041 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.163 0.837 34 H 0.167 0.833 35 H 0.151 0.849 36 H 0.251 0.749 37 H 0.144 0.856 38 H 0.096 0.904 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.092 0.908 49 H 0.080 0.920 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.552 -19.963 -4.613 21.836 hybrid contribution 0.946 2.425 0.059 2.604 sum -6.606 -17.537 -4.554 19.285 Atomic orbital electron populations 1.70101 1.07502 1.29089 1.46978 1.26012 0.96017 1.03001 0.92967 0.84991 0.78728 0.76589 0.78335 1.18451 1.19798 1.19490 1.23647 0.96340 0.91582 1.59419 0.88631 1.82927 1.08194 0.98246 1.86708 1.22484 1.00086 0.95878 1.05708 1.21377 0.91667 1.00702 1.03315 1.21284 0.99001 0.93259 0.99812 1.21226 0.96356 0.95785 1.02079 1.21178 0.91907 0.99393 1.00948 1.17344 0.85097 0.90290 1.04923 1.43447 1.08695 1.34013 1.44562 1.21166 0.92424 0.78688 0.77631 1.90641 1.49974 1.54655 1.46169 1.22149 0.91422 0.94720 1.00961 1.62957 1.29656 1.25595 1.05571 1.23126 0.99128 0.98014 0.87529 1.22632 0.96879 0.98281 0.99008 1.22036 0.97571 0.97748 0.93348 0.90177 1.21425 0.93541 0.99318 0.99900 1.21539 1.01831 0.98176 0.93950 1.21282 0.95145 1.01408 0.97355 1.21035 0.97438 0.97189 0.98217 1.22167 0.88030 0.96376 0.97478 0.93360 0.91497 0.85767 0.83696 0.83277 0.84852 0.74879 0.85584 0.90380 0.94452 0.91573 0.89708 0.90824 0.91700 0.90641 0.90849 0.91967 0.92037 0.90769 0.92003 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.65 13.22 21.63 0.29 -50.37 16 2 C 0.03 1.40 5.49 84.83 0.47 1.86 16 3 Si 0.99 41.77 29.55 68.60 2.03 43.79 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.56 -30.58 9.07 67.93 0.62 -29.96 16 8 H 0.10 5.01 4.83 -2.91 -0.01 5.00 16 9 S -0.01 -0.60 20.53 -56.49 -1.16 -1.76 16 10 C -0.12 -5.59 6.12 22.81 0.14 -5.45 16 11 C -0.15 -6.12 9.25 22.41 0.21 -5.91 16 12 C -0.11 -3.88 10.03 22.27 0.22 -3.65 16 13 C -0.13 -4.29 10.04 22.30 0.22 -4.07 16 14 C -0.11 -4.14 8.69 22.37 0.19 -3.95 16 15 C 0.13 5.01 6.32 38.31 0.24 5.25 16 16 N -0.66 -22.98 5.03 -302.99 -1.52 -24.50 16 17 C 0.51 16.67 7.41 87.65 0.65 17.32 16 18 O -0.54 -20.53 13.03 -3.09 -0.04 -20.57 16 19 C 0.04 0.94 5.03 85.56 0.43 1.37 16 20 N -0.51 -12.45 4.79 -867.04 -4.16 -16.61 16 21 C 0.05 1.23 5.74 86.77 0.50 1.73 16 22 C -0.13 -2.34 6.57 31.61 0.21 -2.13 16 23 C -0.09 -1.43 2.60 -10.14 -0.03 -1.46 16 24 H 0.08 1.42 8.12 -2.39 -0.02 1.40 16 25 C -0.10 -1.27 5.65 30.47 0.17 -1.10 16 26 C -0.12 -1.28 5.84 30.69 0.18 -1.10 16 27 C -0.11 -1.37 5.80 30.24 0.18 -1.19 16 28 C -0.10 -1.61 5.85 29.87 0.17 -1.44 16 29 C 0.07 1.25 1.73 45.39 0.08 1.33 16 30 H 0.05 0.88 7.60 -2.39 -0.02 0.87 16 31 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.12 5.51 4.95 -2.91 -0.01 5.49 16 33 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 34 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 35 H 0.13 4.88 6.19 -2.91 -0.02 4.86 16 36 H 0.41 13.33 7.95 -92.71 -0.74 12.59 16 37 H 0.13 2.47 8.08 -2.38 -0.02 2.45 16 38 H 0.08 1.80 7.90 -2.38 -0.02 1.78 16 39 H 0.04 1.03 7.40 -2.39 -0.02 1.01 16 40 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 41 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 43 H 0.06 0.81 7.99 -2.39 -0.02 0.79 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 45 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 49 H 0.06 1.09 8.12 -2.38 -0.02 1.07 16 50 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -66.11 401.57 0.50 -65.61 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: 0.21 Total: 36.94 kcal Atomic # 6 Polarization: -37.39 SS G_CDS: 4.85 Total: -32.53 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -5.39 Total: -91.48 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.04 Total: -20.57 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: -0.60 SS G_CDS: -1.16 Total: -1.76 kcal Total: -66.11 0.50 -65.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230113801.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.248 kcal (2) G-P(sol) polarization free energy of solvation -66.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds