Wall clock time and date at job start Tue Mar 31 2020 06:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31649 * 1 3 3 Si 1.86803 * 119.99494 * 2 1 4 4 H 1.48500 * 109.47032 * 269.99899 * 3 2 1 5 5 H 1.48501 * 109.47428 * 29.99569 * 3 2 1 6 6 H 1.48496 * 109.47410 * 149.99623 * 3 2 1 7 7 C 1.38681 * 120.00832 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99573 * 0.02562 * 7 2 1 9 9 S 1.76194 * 120.00516 * 180.02562 * 7 2 1 10 10 C 1.76197 * 100.00455 * 185.03085 * 9 7 2 11 11 C 1.38993 * 120.12158 * 354.38567 * 10 9 7 12 12 C 1.38081 * 119.98098 * 180.02562 * 11 10 9 13 13 C 1.38399 * 120.22508 * 0.02562 * 12 11 10 14 14 C 1.38218 * 120.25130 * 359.97438 * 13 12 11 15 15 C 1.38683 * 120.01750 * 359.67894 * 14 13 12 16 16 N 1.39933 * 120.11695 * 180.30022 * 15 14 13 17 17 C 1.34779 * 119.99671 * 335.24529 * 16 15 14 18 18 O 1.21294 * 120.00298 * 354.25541 * 17 16 15 19 19 C 1.50702 * 119.99967 * 174.25975 * 17 16 15 20 20 N 1.46899 * 109.47066 * 179.97438 * 19 17 16 21 21 C 1.47311 * 110.99937 * 291.41610 * 20 19 17 22 22 C 1.54390 * 106.53410 * 220.63033 * 21 20 19 23 23 C 1.53688 * 102.86723 * 27.50805 * 22 21 20 24 24 H 1.09002 * 105.23799 * 84.27317 * 23 22 21 25 25 C 1.49754 * 113.05848 * 200.14354 * 23 22 21 26 26 C 1.52509 * 113.02477 * 89.13716 * 25 23 22 27 27 C 1.53358 * 107.89217 * 55.36857 * 26 25 23 28 28 C 1.51442 * 107.51849 * 292.43644 * 27 26 25 29 29 C 1.48248 * 110.99684 * 170.00085 * 20 19 17 30 30 H 1.08995 * 108.88251 * 3.64914 * 29 20 19 31 31 H 0.96998 * 120.01045 * 0.02562 * 1 2 3 32 32 H 1.07995 * 120.01319 * 359.97366 * 11 10 9 33 33 H 1.08000 * 119.89322 * 179.97438 * 12 11 10 34 34 H 1.08001 * 119.87735 * 179.97438 * 13 12 11 35 35 H 1.08004 * 119.99020 * 180.02562 * 14 13 12 36 36 H 0.97002 * 120.00275 * 155.23997 * 16 15 14 37 37 H 1.08997 * 109.47247 * 299.99648 * 19 17 16 38 38 H 1.09003 * 109.47382 * 59.99511 * 19 17 16 39 39 H 1.08994 * 110.05249 * 339.89967 * 21 20 19 40 40 H 1.09001 * 110.04142 * 101.36627 * 21 20 19 41 41 H 1.09001 * 110.73453 * 269.16077 * 22 21 20 42 42 H 1.08998 * 110.73359 * 145.85255 * 22 21 20 43 43 H 1.08996 * 108.77121 * 210.05100 * 25 23 22 44 44 H 1.08997 * 108.77130 * 328.22263 * 25 23 22 45 45 H 1.09004 * 109.77700 * 174.96748 * 26 25 23 46 46 H 1.09003 * 109.77924 * 295.72089 * 26 25 23 47 47 H 1.09011 * 109.69438 * 52.45742 * 27 26 25 48 48 H 1.08991 * 109.70165 * 173.05451 * 27 26 25 49 49 H 1.09001 * 109.37432 * 298.90930 * 28 27 26 50 50 H 1.08994 * 107.87158 * 180.78916 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6528 0.6999 6 1 3.5479 1.4405 0.7001 7 6 2.0101 -1.2009 0.0005 8 1 1.4701 -2.1363 0.0005 9 16 3.7720 -1.2008 0.0012 10 6 4.0783 -2.9293 -0.1504 11 6 3.0212 -3.8310 -0.1119 12 6 3.2646 -5.1850 -0.2305 13 6 4.5590 -5.6491 -0.3873 14 6 5.6172 -4.7608 -0.4269 15 6 5.3838 -3.3983 -0.3160 16 7 6.4530 -2.4967 -0.3620 17 6 7.6913 -2.9018 -0.0170 18 8 7.8620 -4.0155 0.4322 19 6 8.8639 -1.9710 -0.1892 20 7 10.0920 -2.6429 0.2562 21 6 10.0840 -2.8444 1.7154 22 6 11.5147 -2.5393 2.2090 23 6 12.0320 -1.5401 1.1621 24 1 11.6691 -0.5664 1.4915 25 6 13.5263 -1.4482 1.1272 26 6 14.1634 -2.4508 0.1707 27 6 13.5381 -2.2436 -1.2142 28 6 12.0862 -2.6652 -1.1264 29 6 11.2925 -1.8570 -0.1164 30 1 10.9732 -0.9243 -0.5814 31 1 -0.4851 0.8399 -0.0004 32 1 2.0099 -3.4728 0.0115 33 1 2.4422 -5.8844 -0.2000 34 1 4.7429 -6.7094 -0.4791 35 1 6.6256 -5.1276 -0.5498 36 1 6.3030 -1.5803 -0.6423 37 1 8.9596 -1.6976 -1.2400 38 1 8.7051 -1.0724 0.4069 39 1 9.3741 -2.1623 2.1830 40 1 9.8205 -3.8761 1.9485 41 1 12.1228 -3.4439 2.2127 42 1 11.4924 -2.0840 3.1990 43 1 13.8087 -0.4415 0.8193 44 1 13.9123 -1.6268 2.1308 45 1 15.2387 -2.2794 0.1192 46 1 13.9679 -3.4659 0.5164 47 1 13.6115 -1.1934 -1.4971 48 1 14.0579 -2.8595 -1.9479 49 1 12.0315 -3.7194 -0.8550 50 1 11.6395 -2.5336 -2.1119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230113807.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:06 Heat of formation + Delta-G solvation = -8.852272 kcal Electronic energy + Delta-G solvation = -29679.778824 eV Core-core repulsion = 25797.356249 eV Total energy + Delta-G solvation = -3882.422575 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.78200 -39.84580 -37.83425 -35.93002 -34.40781 -33.03915 -32.74785 -30.66882 -30.37045 -29.25652 -28.88026 -26.19704 -25.95339 -23.06570 -22.62040 -22.28005 -22.12854 -21.15676 -20.03162 -18.85610 -18.46067 -17.10973 -16.78478 -16.37836 -16.03620 -15.60381 -15.54004 -15.21238 -14.67735 -14.55167 -14.46552 -14.10217 -13.93659 -13.70899 -13.51157 -13.38447 -13.04636 -12.85979 -12.76538 -12.43527 -12.35733 -11.97795 -11.91793 -11.79677 -11.72161 -11.39391 -11.28539 -11.25035 -11.12811 -11.06235 -10.73363 -10.65821 -10.31587 -10.28853 -10.12340 -9.80983 -9.51385 -9.37723 -8.97925 -8.80780 -8.49053 -7.72709 -6.79638 -6.52934 -4.28848 1.77843 2.02105 2.72999 2.84400 3.06263 3.09615 3.19014 3.36761 3.80468 4.04042 4.19892 4.29982 4.36834 4.40525 4.44780 4.75444 4.79094 4.83465 4.87534 4.92340 4.95561 5.07682 5.09217 5.12845 5.20149 5.28598 5.40734 5.54425 5.57710 5.58953 5.61390 5.62856 5.72731 5.80139 5.83720 5.85521 5.89952 5.99816 6.05014 6.07919 6.11040 6.16199 6.23457 6.52524 6.71626 6.80918 6.82456 6.86944 7.06794 7.17767 7.59761 7.69822 7.71632 8.29991 8.34238 8.88664 10.54542 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.013036 B = 0.002439 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.336099 B =11476.880651 C =12962.145612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.098 3.902 3 Si 0.857 3.143 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.241 1.241 7 C -0.531 4.531 8 H 0.111 0.889 9 S -0.061 6.061 10 C -0.087 4.087 11 C -0.117 4.117 12 C -0.120 4.120 13 C -0.137 4.137 14 C -0.115 4.115 15 C 0.134 3.866 16 N -0.661 5.661 17 C 0.512 3.488 18 O -0.506 6.506 19 C 0.032 3.968 20 N -0.507 5.507 21 C 0.048 3.952 22 C -0.127 4.127 23 C -0.098 4.098 24 H 0.056 0.944 25 C -0.100 4.100 26 C -0.119 4.119 27 C -0.117 4.117 28 C -0.103 4.103 29 C 0.090 3.910 30 H 0.059 0.941 31 H 0.275 0.725 32 H 0.145 0.855 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.139 0.861 36 H 0.409 0.591 37 H 0.105 0.895 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.074 0.926 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.117 -2.409 -0.364 25.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.165 1.165 7 C -0.677 4.677 8 H 0.128 0.872 9 S 0.189 5.811 10 C -0.204 4.204 11 C -0.142 4.142 12 C -0.141 4.141 13 C -0.160 4.160 14 C -0.137 4.137 15 C 0.032 3.968 16 N -0.306 5.306 17 C 0.298 3.702 18 O -0.380 6.380 19 C -0.099 4.099 20 N -0.231 5.231 21 C -0.079 4.079 22 C -0.165 4.165 23 C -0.117 4.117 24 H 0.074 0.926 25 C -0.138 4.138 26 C -0.157 4.157 27 C -0.155 4.155 28 C -0.142 4.142 29 C -0.018 4.018 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.163 0.837 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.157 0.843 36 H 0.246 0.754 37 H 0.123 0.877 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.092 0.908 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 25.771 -2.357 -0.186 25.880 hybrid contribution -1.161 1.171 0.169 1.658 sum 24.611 -1.185 -0.017 24.639 Atomic orbital electron populations 1.69914 1.05850 1.28201 1.45975 1.24790 0.94628 0.98927 0.92861 0.86787 0.81610 0.83530 0.79985 1.18868 1.19479 1.16496 1.22631 0.87135 0.98403 1.59567 0.87158 1.82542 1.11912 0.99489 1.87146 1.21869 0.93869 1.00134 1.04499 1.21418 0.99670 0.92291 1.00812 1.21005 0.96473 0.95237 1.01380 1.20845 0.92485 0.98756 1.03871 1.21098 1.00221 0.90918 1.01448 1.17227 0.85318 0.89539 1.04681 1.43440 1.06719 1.14387 1.66085 1.20502 0.83373 0.88641 0.77692 1.90645 1.84415 1.20719 1.42246 1.22209 0.89649 0.95044 1.03022 1.63315 0.99894 1.45638 1.14284 1.22830 0.95843 1.02896 0.86361 1.22562 0.96296 0.99504 0.98121 1.20649 0.96007 0.99794 0.95300 0.92555 1.20628 0.93495 0.99623 1.00061 1.21529 0.99078 0.99681 0.95404 1.21333 0.95872 1.01341 0.97002 1.20925 0.94014 1.01129 0.98088 1.21414 0.90220 0.95042 0.95100 0.92311 0.91469 0.83735 0.86774 0.86772 0.84339 0.75419 0.87656 0.91568 0.93760 0.89104 0.90816 0.90953 0.92238 0.91821 0.92074 0.91631 0.92046 0.91733 0.90753 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.49 13.97 55.48 0.78 -23.72 16 2 C 0.10 2.66 5.50 -17.47 -0.10 2.57 16 3 Si 0.86 19.58 27.73 -169.99 -4.71 14.86 16 4 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 6 H -0.24 -5.29 6.74 56.52 0.38 -4.91 16 7 C -0.53 -14.24 9.62 30.90 0.30 -13.94 16 8 H 0.11 3.11 5.04 -52.48 -0.26 2.84 16 9 S -0.06 -1.40 18.34 -107.50 -1.97 -3.37 16 10 C -0.09 -1.86 6.12 -38.75 -0.24 -2.10 16 11 C -0.12 -2.46 9.26 -39.36 -0.36 -2.83 16 12 C -0.12 -2.17 10.03 -39.58 -0.40 -2.56 16 13 C -0.14 -2.34 10.04 -39.53 -0.40 -2.74 16 14 C -0.12 -2.11 8.71 -39.42 -0.34 -2.45 16 15 C 0.13 2.56 6.44 -83.45 -0.54 2.02 16 16 N -0.66 -10.68 5.16 -9.70 -0.05 -10.73 16 17 C 0.51 7.65 7.42 -10.98 -0.08 7.57 16 18 O -0.51 -8.93 12.32 5.55 0.07 -8.86 16 19 C 0.03 0.36 4.98 -4.98 -0.02 0.33 16 20 N -0.51 -5.66 4.34 -227.67 -0.99 -6.65 16 21 C 0.05 0.54 5.66 -2.87 -0.02 0.52 16 22 C -0.13 -1.10 6.37 -25.65 -0.16 -1.26 16 23 C -0.10 -0.78 2.47 -92.85 -0.23 -1.01 16 24 H 0.06 0.45 8.06 -51.93 -0.42 0.04 16 25 C -0.10 -0.66 5.36 -28.59 -0.15 -0.81 16 26 C -0.12 -0.77 6.02 -26.80 -0.16 -0.93 16 27 C -0.12 -0.79 5.98 -27.33 -0.16 -0.95 16 28 C -0.10 -0.87 5.28 -28.15 -0.15 -1.02 16 29 C 0.09 0.80 2.86 -68.57 -0.20 0.61 16 30 H 0.06 0.49 7.49 -51.93 -0.39 0.10 16 31 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.15 3.28 4.93 -52.49 -0.26 3.02 16 33 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.14 2.51 5.79 -52.48 -0.30 2.21 16 36 H 0.41 6.03 7.66 -40.82 -0.31 5.72 16 37 H 0.11 0.98 8.02 -51.93 -0.42 0.56 16 38 H 0.07 0.66 7.87 -51.93 -0.41 0.25 16 39 H 0.04 0.52 7.53 -51.93 -0.39 0.13 16 40 H 0.09 1.20 7.62 -51.93 -0.40 0.80 16 41 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.39 7.92 -51.93 -0.41 -0.02 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 47 H 0.06 0.39 8.12 -51.92 -0.42 -0.03 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 50 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 396.42 15.07 5.97 5.97 Total: -1.00 -29.81 396.42 -12.09 -41.90 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -7.77 Total: 9.57 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -3.41 Total: -18.98 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: -0.26 Total: -41.10 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.07 Total: -8.86 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.71 Total: 14.86 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -1.97 Total: -3.37 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.81 -12.09 -41.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230113807.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.050 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds