Wall clock time and date at job start Tue Mar 31 2020 04:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.47154 * 2 1 4 4 C 1.52996 * 109.47347 * 119.99844 * 2 1 3 5 5 C 1.50702 * 109.47159 * 185.00014 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 S 1.80997 * 109.47324 * 240.00157 * 2 1 3 14 14 C 1.76201 * 100.00129 * 64.99762 * 13 2 1 15 15 N 1.31410 * 126.35743 * 0.02562 * 14 13 2 16 16 N 1.28505 * 110.14712 * 179.97438 * 15 14 13 17 17 C 1.31512 * 109.95011 * 359.97438 * 16 15 14 18 18 C 1.47115 * 126.49966 * 180.02562 * 17 16 15 19 19 C 1.36267 * 125.96256 * 14.69191 * 18 17 16 20 20 C 1.40821 * 106.72606 * 179.88702 * 19 18 17 21 21 C 1.34791 * 107.07546 * 0.37860 * 20 19 18 22 22 O 1.34329 * 108.72102 * 359.76245 * 21 20 19 23 23 N 1.36683 * 126.36516 * 179.71354 * 14 13 2 24 24 C 1.46496 * 127.18480 * 0.02562 * 23 14 13 25 25 C 1.50701 * 109.47347 * 90.02364 * 24 23 14 26 26 C 1.34517 * 125.78888 * 89.71298 * 25 24 23 27 27 C 1.41378 * 106.84106 * 179.89254 * 26 25 24 28 28 C 1.34513 * 106.84424 * 0.37323 * 27 26 25 29 29 O 1.34301 * 125.79302 * 270.02563 * 25 24 23 30 30 H 1.09003 * 109.47483 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.47295 * 60.00152 * 1 2 3 32 32 H 1.09001 * 109.47340 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47066 * 65.00217 * 4 2 1 34 34 H 1.08994 * 109.47405 * 305.00047 * 4 2 1 35 35 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 36 36 H 1.07997 * 126.63452 * 0.02562 * 19 18 17 37 37 H 1.08006 * 126.46316 * 180.17822 * 20 19 18 38 38 H 1.08001 * 125.63530 * 179.74796 * 21 20 19 39 39 H 1.09005 * 109.46903 * 210.02131 * 24 23 14 40 40 H 1.08997 * 109.47519 * 330.02171 * 24 23 14 41 41 H 1.08009 * 126.57802 * 0.02623 * 26 25 24 42 42 H 1.08002 * 126.57933 * 180.11918 * 27 26 25 43 43 H 1.07993 * 125.79251 * 179.75390 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3126 6 1 4.0790 -0.0854 0.5395 7 6 4.2300 -1.1881 2.3611 8 7 3.5760 -1.8324 3.3027 9 14 6.0909 -1.0496 2.4437 10 1 6.5826 -0.2804 1.2725 11 1 6.4802 -0.3493 3.6941 12 1 6.6896 -2.4086 2.4306 13 16 2.1333 -0.8532 -1.4778 14 6 1.5439 0.2423 -2.7257 15 7 0.8630 1.3495 -2.5321 16 7 0.5931 1.9058 -3.6587 17 6 1.0864 1.1873 -4.6435 18 6 0.9898 1.4886 -6.0802 19 6 0.6268 2.6840 -6.6245 20 6 0.6727 2.5232 -8.0228 21 6 1.0485 1.2512 -8.2628 22 8 1.2394 0.6290 -7.0878 23 7 1.7150 0.1015 -4.0745 24 6 2.4178 -0.9796 -4.7697 25 6 1.4472 -2.0884 -5.0853 26 6 0.7112 -2.1943 -6.2063 27 6 -0.0516 -3.3784 -6.0851 28 6 0.2576 -3.9210 -4.8937 29 8 1.1659 -3.1353 -4.2925 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.7517 -1.7715 1.2056 34 1 1.6054 -0.2617 2.1369 35 1 4.0601 -2.2360 4.0401 36 1 0.3582 3.5816 -6.0874 37 1 0.4460 3.2762 -8.7632 38 1 1.1750 0.8060 -9.2386 39 1 2.8465 -0.5974 -5.6962 40 1 3.2141 -1.3642 -4.1325 41 1 0.7059 -1.5077 -7.0400 42 1 -0.7517 -3.7699 -6.8083 43 1 -0.1549 -4.8334 -4.4891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000241897138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:47 Heat of formation + Delta-G solvation = 110.680757 kcal Electronic energy + Delta-G solvation = -29287.780247 eV Core-core repulsion = 25236.593486 eV Total energy + Delta-G solvation = -4051.186761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 359.109 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.13098 -42.70498 -42.37223 -35.63045 -34.58424 -33.46473 -33.13096 -32.22123 -31.79463 -30.65756 -28.76659 -27.40196 -26.66456 -23.44351 -23.32736 -23.02888 -21.92934 -21.60193 -21.01746 -20.75580 -20.28616 -18.44385 -17.79281 -17.26862 -16.59697 -16.39468 -16.24522 -15.96890 -15.70119 -15.33218 -14.85693 -14.62138 -14.49071 -13.72508 -13.36385 -13.27568 -13.05190 -12.97760 -12.89323 -12.77212 -12.62798 -12.31924 -11.92490 -11.73391 -11.46577 -11.18704 -10.91839 -10.77296 -10.60131 -10.54562 -10.45019 -10.34178 -10.13750 -10.09203 -9.53184 -9.52924 -9.18880 -8.80849 -8.60858 -8.43359 -7.10071 -6.07890 -4.10458 0.76035 1.25279 1.58847 1.86552 2.23942 2.34495 2.37317 2.71988 2.77704 2.88158 3.05498 3.28785 3.36749 3.41552 4.12907 4.24104 4.41578 4.42839 4.66974 4.69625 4.80890 4.90602 4.95029 5.11387 5.28432 5.29688 5.52179 5.53066 5.58775 5.71658 5.73013 5.76191 5.84100 5.85454 5.90468 6.13998 6.15107 6.26433 6.52801 6.54945 6.61295 6.69904 6.80023 6.93189 7.47877 7.52093 7.89142 8.24826 8.62359 8.94665 9.54220 11.03093 Molecular weight = 359.11amu Principal moments of inertia in cm(-1) A = 0.012043 B = 0.003050 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.460748 B = 9176.825129 C =10078.253233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.057 4.057 3 H 0.093 0.907 4 C 0.037 3.963 5 C -0.524 4.524 6 H 0.064 0.936 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.891 3.109 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.283 1.283 13 S 0.033 5.967 14 C 0.184 3.816 15 N -0.289 5.289 16 N -0.248 5.248 17 C 0.233 3.767 18 C 0.058 3.942 19 C -0.147 4.147 20 C -0.208 4.208 21 C -0.029 4.029 22 O -0.175 6.175 23 N -0.464 5.464 24 C 0.193 3.807 25 C -0.048 4.048 26 C -0.173 4.173 27 C -0.225 4.225 28 C -0.019 4.019 29 O -0.157 6.157 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.027 0.973 34 H 0.042 0.958 35 H 0.261 0.739 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.209 0.791 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.152 0.848 42 H 0.149 0.851 43 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.141 0.250 -25.081 25.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.187 4.187 3 H 0.111 0.889 4 C -0.002 4.002 5 C -0.562 4.562 6 H 0.082 0.918 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.719 3.281 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.210 1.210 13 S 0.264 5.736 14 C -0.187 4.187 15 N -0.134 5.134 16 N -0.090 5.090 17 C -0.032 4.032 18 C 0.007 3.993 19 C -0.169 4.169 20 C -0.228 4.228 21 C -0.097 4.097 22 O -0.070 6.070 23 N -0.159 5.159 24 C 0.070 3.930 25 C -0.099 4.099 26 C -0.194 4.194 27 C -0.244 4.244 28 C -0.088 4.088 29 O -0.052 6.052 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.178 0.822 37 H 0.173 0.827 38 H 0.225 0.775 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.170 0.830 42 H 0.167 0.833 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -5.943 -0.114 -23.897 24.625 hybrid contribution 0.735 0.202 -0.769 1.083 sum -5.208 0.088 -24.666 25.210 Atomic orbital electron populations 1.22125 0.94043 1.01936 1.02579 1.23720 0.97663 1.02741 0.94534 0.88863 1.19110 0.96540 0.95658 0.88870 1.21298 0.91468 1.35003 1.08463 0.91786 1.24986 0.98547 0.95059 0.95499 1.69964 1.35618 1.35651 1.11884 0.86534 0.85602 0.77847 0.78104 1.19524 1.20972 1.20959 1.86202 1.66898 1.26424 0.94121 1.27853 1.02204 1.01355 0.87327 1.74795 1.16570 1.05636 1.16423 1.74365 1.17921 1.22975 0.93785 1.21190 1.01965 0.88999 0.91052 1.18303 1.08529 0.89275 0.83238 1.21840 1.03388 0.97838 0.93833 1.21810 1.07193 0.97662 0.96085 1.24207 1.04437 0.93251 0.87848 1.84064 1.69235 1.39338 1.14404 1.46616 1.43675 1.20046 1.05584 1.20125 0.91386 0.81547 0.99915 1.22149 1.04070 0.91632 0.92025 1.21763 0.98677 0.99391 0.99531 1.21847 1.05262 0.97930 0.99342 1.24214 0.93305 0.97476 0.93799 1.84127 1.48550 1.29678 1.42843 0.91765 0.91803 0.92619 0.95435 0.93960 0.92888 0.82205 0.82675 0.77451 0.85470 0.86201 0.83015 0.83274 0.77751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.01 37.15 0.33 -2.42 16 2 C -0.06 -1.20 2.29 -26.74 -0.06 -1.26 16 3 H 0.09 2.03 8.14 -51.91 -0.42 1.61 16 4 C 0.04 0.92 4.44 -27.88 -0.12 0.79 16 5 C -0.52 -14.15 8.53 -34.44 -0.29 -14.44 16 6 H 0.06 1.71 7.60 -52.49 -0.40 1.31 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 S 0.03 0.63 20.56 -107.50 -2.21 -1.58 16 14 C 0.18 3.39 7.76 -88.10 -0.68 2.70 16 15 N -0.29 -5.68 9.71 30.73 0.30 -5.38 16 16 N -0.25 -4.54 12.22 32.49 0.40 -4.15 16 17 C 0.23 3.69 7.89 -153.70 -1.21 2.47 16 18 C 0.06 0.73 7.01 -36.69 -0.26 0.48 16 19 C -0.15 -1.58 10.84 -39.31 -0.43 -2.01 16 20 C -0.21 -1.62 10.88 -39.83 -0.43 -2.05 16 21 C -0.03 -0.20 12.08 29.51 0.36 0.16 16 22 O -0.17 -1.75 7.11 4.34 0.03 -1.72 16 23 N -0.46 -7.27 2.83 -115.49 -0.33 -7.59 16 24 C 0.19 2.39 6.16 -5.20 -0.03 2.35 16 25 C -0.05 -0.61 6.90 -35.62 -0.25 -0.85 16 26 C -0.17 -1.96 10.56 -39.70 -0.42 -2.38 16 27 C -0.22 -2.29 10.91 -39.70 -0.43 -2.72 16 28 C -0.02 -0.20 12.09 29.42 0.36 0.16 16 29 O -0.16 -2.15 10.65 5.70 0.06 -2.09 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.20 5.90 -51.93 -0.31 0.89 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.16 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.21 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.13 1.24 7.11 -51.93 -0.37 0.87 16 40 H 0.12 1.43 7.86 -51.93 -0.41 1.02 16 41 H 0.15 1.51 5.96 -52.48 -0.31 1.20 16 42 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.21 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 383.77 15.07 5.78 5.78 Total: -1.00 -33.12 383.77 -9.08 -42.21 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.16 Total: 0.90 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -3.67 Total: -17.43 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 1.11 Total: -42.32 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: 0.09 Total: -3.80 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -2.21 Total: -1.58 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.12 -9.08 -42.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000241897138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.887 kcal (2) G-P(sol) polarization free energy of solvation -33.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds