Wall clock time and date at job start Tue Mar 31 2020 06:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86797 * 120.00074 * 2 1 4 4 H 1.48497 * 109.47319 * 240.00240 * 3 2 1 5 5 H 1.48498 * 109.47321 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47152 * 120.00434 * 3 2 1 7 7 C 1.38795 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00692 * 179.97438 * 7 2 1 9 9 S 1.76205 * 120.00142 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00273 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47072 * 179.97438 * 10 9 7 12 12 O 1.21290 * 119.99678 * 355.07442 * 11 10 9 13 13 N 1.34782 * 119.99891 * 175.06530 * 11 10 9 14 14 C 1.47285 * 121.19026 * 4.21434 * 13 11 10 15 15 C 1.53508 * 107.20768 * 221.13268 * 14 13 11 16 16 N 1.46548 * 109.12078 * 298.27254 * 15 14 13 17 17 C 1.46901 * 111.00046 * 288.04833 * 16 15 14 18 18 C 1.52997 * 109.46959 * 289.07680 * 17 16 15 19 19 F 1.39906 * 109.47404 * 66.37287 * 18 17 16 20 20 F 1.39903 * 109.46959 * 306.37352 * 18 17 16 21 21 F 1.39903 * 109.47457 * 186.37372 * 18 17 16 22 22 C 1.39609 * 113.04843 * 53.52890 * 16 15 14 23 23 C 1.39148 * 118.86151 * 156.99495 * 22 16 15 24 24 C 1.38071 * 120.21245 * 179.74234 * 23 22 16 25 25 C 1.38283 * 120.30614 * 359.95971 * 24 23 22 26 26 C 1.38239 * 119.98049 * 0.12449 * 25 24 23 27 27 C 1.38653 * 120.00311 * 0.02562 * 26 25 24 28 28 H 0.96998 * 119.99604 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46940 * 60.00089 * 10 9 7 30 30 H 1.08998 * 109.47155 * 299.99943 * 10 9 7 31 31 H 1.08991 * 109.91056 * 340.55833 * 14 13 11 32 32 H 1.08999 * 109.90980 * 101.63726 * 14 13 11 33 33 H 1.08998 * 109.52868 * 178.37518 * 15 14 13 34 34 H 1.09002 * 109.52840 * 58.16359 * 15 14 13 35 35 H 1.08999 * 109.47341 * 169.07536 * 17 16 15 36 36 H 1.09002 * 109.46990 * 49.07117 * 17 16 15 37 37 H 1.07996 * 119.89917 * 359.72130 * 23 22 16 38 38 H 1.08003 * 119.85043 * 179.97438 * 24 23 22 39 39 H 1.08006 * 120.01222 * 180.10083 * 25 24 23 40 40 H 1.08001 * 119.99970 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9873 -5.3028 -0.0017 12 8 0.7946 -5.5036 0.0897 13 7 2.8399 -6.3417 -0.1031 14 6 4.2977 -6.1329 -0.1233 15 6 4.8782 -7.0842 -1.1789 16 7 4.5923 -8.4673 -0.7878 17 6 5.4147 -8.8703 0.3607 18 6 6.8706 -9.0243 -0.0836 19 9 7.3814 -7.7742 -0.4493 20 9 6.9346 -9.8926 -1.1787 21 9 7.6273 -9.5469 0.9707 22 6 3.2379 -8.6957 -0.5379 23 6 2.7466 -9.9940 -0.6351 24 6 1.4129 -10.2524 -0.3886 25 6 0.5552 -9.2243 -0.0427 26 6 1.0319 -7.9304 0.0552 27 6 2.3695 -7.6636 -0.1941 28 1 -0.4849 0.8401 0.0004 29 1 3.1251 -3.7318 0.8875 30 1 3.1237 -3.7310 -0.8925 31 1 4.5211 -5.1003 -0.3913 32 1 4.7190 -6.3615 0.8557 33 1 5.9565 -6.9399 -1.2458 34 1 4.4211 -6.8773 -2.1466 35 1 5.0518 -9.8208 0.7519 36 1 5.3508 -8.1092 1.1383 37 1 3.4105 -10.8020 -0.9045 38 1 1.0377 -11.2622 -0.4662 39 1 -0.4869 -9.4321 0.1507 40 1 0.3622 -7.1272 0.3249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000242389623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:20 Heat of formation + Delta-G solvation = -123.336285 kcal Electronic energy + Delta-G solvation = -30126.169977 eV Core-core repulsion = 25425.260073 eV Total energy + Delta-G solvation = -4700.909904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.086 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.48513 -48.06985 -47.86096 -41.47637 -38.97609 -37.39974 -35.28453 -32.52200 -31.27755 -30.83508 -30.48972 -28.78333 -26.67582 -25.57338 -24.32404 -23.52853 -23.04922 -20.93620 -19.65341 -18.95455 -18.91079 -17.90732 -17.74618 -17.27703 -17.15758 -16.57248 -16.08934 -15.46704 -15.14351 -14.92382 -14.87968 -14.76766 -14.54303 -14.39350 -14.20913 -14.12190 -14.08245 -14.01075 -13.62008 -13.42790 -13.31079 -12.90725 -12.73029 -12.61128 -12.30599 -12.13074 -11.90293 -11.66985 -11.32782 -11.12419 -11.10345 -10.85526 -10.42609 -9.93458 -9.77292 -9.19642 -9.14554 -8.43220 -8.38907 -7.96630 -6.62953 -6.30731 -4.03303 1.09371 1.33246 2.27996 2.47998 2.73304 2.99439 3.16055 3.17925 3.23389 3.38106 3.39517 3.58882 3.72715 3.97648 4.10004 4.31753 4.39195 4.56820 4.61683 4.71692 4.86193 4.90261 5.03845 5.04888 5.16051 5.21996 5.29250 5.42379 5.43958 5.56698 5.64842 5.78470 5.90099 5.98235 6.17423 6.27854 6.42569 6.55555 6.68781 7.12130 7.19774 7.50263 8.18493 8.25560 9.14601 10.76615 Molecular weight = 360.09amu Principal moments of inertia in cm(-1) A = 0.012411 B = 0.002808 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.480678 B = 9969.425356 C =11938.163412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.920 3.080 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.073 0.927 9 S -0.054 6.054 10 C -0.152 4.152 11 C 0.539 3.461 12 O -0.487 6.487 13 N -0.561 5.561 14 C 0.066 3.934 15 C 0.014 3.986 16 N -0.481 5.481 17 C 0.007 3.993 18 C 0.459 3.541 19 F -0.179 7.179 20 F -0.170 7.170 21 F -0.181 7.181 22 C 0.050 3.950 23 C -0.092 4.092 24 C -0.137 4.137 25 C -0.101 4.101 26 C -0.147 4.147 27 C 0.138 3.862 28 H 0.270 0.730 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.125 0.875 36 H 0.090 0.910 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.418 -21.342 0.428 24.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.134 4.134 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.687 4.687 8 H 0.091 0.909 9 S 0.173 5.827 10 C -0.302 4.302 11 C 0.329 3.671 12 O -0.360 6.360 13 N -0.286 5.286 14 C -0.059 4.059 15 C -0.113 4.113 16 N -0.198 5.198 17 C -0.121 4.121 18 C 0.404 3.596 19 F -0.161 7.161 20 F -0.152 7.152 21 F -0.163 7.163 22 C -0.048 4.048 23 C -0.112 4.112 24 C -0.157 4.157 25 C -0.120 4.120 26 C -0.167 4.167 27 C 0.041 3.959 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.128 0.872 32 H 0.095 0.905 33 H 0.138 0.862 34 H 0.118 0.882 35 H 0.143 0.857 36 H 0.108 0.892 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 10.696 -21.681 0.081 24.176 hybrid contribution 2.148 1.730 0.443 2.793 sum 12.843 -19.951 0.524 23.733 Atomic orbital electron populations 1.69996 1.05976 1.27760 1.46414 1.24991 0.95046 0.99079 0.94327 0.86206 0.79252 0.81093 0.78867 1.19855 1.20739 1.19877 1.22794 0.94868 0.91421 1.59587 0.90861 1.85422 1.04203 0.96355 1.96754 1.23588 1.07148 0.94365 1.05146 1.20580 0.85793 0.86029 0.74660 1.90433 1.15574 1.83845 1.46157 1.46001 1.07300 1.04388 1.70949 1.22661 0.79354 1.03255 1.00584 1.23183 1.04470 0.84241 0.99422 1.58546 1.04350 1.23587 1.33307 1.23480 0.88269 1.06397 0.93920 1.20445 0.89931 0.73840 0.75377 1.93060 1.89066 1.42173 1.91794 1.93220 1.96933 1.69852 1.55166 1.93205 1.78737 1.86914 1.57424 1.18096 0.87197 0.93590 1.05894 1.20744 0.95697 0.94494 1.00295 1.20990 0.93193 0.99391 1.02121 1.21229 0.99858 0.92273 0.98656 1.22497 0.94671 0.99344 1.00224 1.18268 0.94433 0.83623 0.99590 0.91990 0.88704 0.88851 0.87169 0.90516 0.86230 0.88200 0.85697 0.89196 0.85358 0.85888 0.85596 0.80376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.43 13.22 55.49 0.73 -24.69 16 2 C 0.08 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 20.79 29.55 -169.99 -5.02 15.77 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -14.75 9.50 30.94 0.29 -14.46 16 8 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 9 S -0.05 -1.39 20.58 -107.50 -2.21 -3.60 16 10 C -0.15 -2.88 4.66 36.01 0.17 -2.71 16 11 C 0.54 9.68 7.66 -10.98 -0.08 9.59 16 12 O -0.49 -10.16 12.48 5.55 0.07 -10.09 16 13 N -0.56 -7.99 3.01 -112.34 -0.34 -8.32 16 14 C 0.07 0.68 6.25 -3.35 -0.02 0.66 16 15 C 0.01 0.13 5.79 -3.75 -0.02 0.11 16 16 N -0.48 -4.65 4.30 -170.94 -0.74 -5.39 16 17 C 0.01 0.05 4.93 -3.83 -0.02 0.03 16 18 C 0.46 3.68 3.23 37.16 0.12 3.80 16 19 F -0.18 -1.52 14.32 2.25 0.03 -1.48 16 20 F -0.17 -1.59 17.12 2.25 0.04 -1.55 16 21 F -0.18 -1.50 17.32 2.25 0.04 -1.46 16 22 C 0.05 0.57 5.06 -83.62 -0.42 0.14 16 23 C -0.09 -0.93 9.42 -39.31 -0.37 -1.30 16 24 C -0.14 -1.36 10.02 -39.63 -0.40 -1.76 16 25 C -0.10 -1.18 10.05 -39.56 -0.40 -1.58 16 26 C -0.15 -2.15 9.04 -39.43 -0.36 -2.51 16 27 C 0.14 1.92 6.34 -83.32 -0.53 1.39 16 28 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 30 H 0.09 1.61 7.46 -51.92 -0.39 1.22 16 31 H 0.11 1.07 6.23 -51.93 -0.32 0.75 16 32 H 0.08 0.69 6.52 -51.93 -0.34 0.35 16 33 H 0.12 0.96 4.93 -51.93 -0.26 0.70 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.12 0.78 7.59 -51.93 -0.39 0.39 16 36 H 0.09 0.61 6.33 -51.93 -0.33 0.28 16 37 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 40 H 0.18 3.07 4.74 -54.67 -0.26 2.81 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -32.29 351.05 -8.19 -40.48 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -3.95 Total: 1.65 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -2.13 Total: -6.59 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.34 Total: -38.40 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.11 Total: -4.50 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -2.21 Total: -3.60 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.29 -8.19 -40.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000242389623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.858 kcal (2) G-P(sol) polarization free energy of solvation -32.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds