Wall clock time and date at job start Tue Mar 31 2020 06:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47415 * 2 1 4 4 C 1.50710 * 109.46871 * 239.99825 * 2 1 3 5 5 H 1.07994 * 119.99999 * 240.00259 * 4 2 1 6 6 C 1.37871 * 119.99540 * 60.00368 * 4 2 1 7 7 N 1.31512 * 120.00521 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99813 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47354 * 89.99716 * 8 6 4 10 10 H 1.48502 * 109.47230 * 209.99932 * 8 6 4 11 11 H 1.48504 * 109.47037 * 329.99726 * 8 6 4 12 12 S 1.81394 * 109.47033 * 120.00433 * 2 1 3 13 13 C 1.76198 * 102.99943 * 286.12795 * 12 2 1 14 14 C 1.38782 * 120.10157 * 0.10943 * 13 12 2 15 15 C 1.38207 * 119.98451 * 180.29245 * 14 13 12 16 16 C 1.38289 * 120.19890 * 359.70809 * 15 14 13 17 17 C 1.38254 * 120.20631 * 359.97438 * 16 15 14 18 18 C 1.38628 * 120.01089 * 0.02562 * 17 16 15 19 19 N 1.40194 * 120.09896 * 179.97438 * 18 17 16 20 20 C 1.34776 * 120.00326 * 33.74661 * 19 18 17 21 21 O 1.21592 * 119.99727 * 354.72330 * 20 19 18 22 22 N 1.34776 * 120.00327 * 174.72281 * 20 19 18 23 23 C 1.49726 * 126.16193 * 180.02562 * 22 20 19 24 24 C 1.51744 * 102.37248 * 153.29230 * 23 22 20 25 25 H 1.09002 * 111.35480 * 289.43521 * 24 23 22 26 26 C 1.51350 * 123.19221 * 152.06925 * 24 23 22 27 27 C 1.56315 * 101.93497 * 208.93069 * 26 24 23 28 28 C 1.55971 * 105.75736 * 25.65807 * 27 26 24 29 29 C 1.49849 * 104.00155 * 7.08487 * 28 27 26 30 30 H 1.08999 * 108.88371 * 77.47486 * 29 28 27 31 31 C 1.49467 * 126.15968 * 359.97438 * 22 20 19 32 32 H 1.08999 * 109.47015 * 184.12163 * 1 2 3 33 33 H 1.08997 * 109.46813 * 304.11837 * 1 2 3 34 34 H 1.08993 * 109.46703 * 64.12285 * 1 2 3 35 35 H 0.97004 * 120.00529 * 179.97438 * 7 6 4 36 36 H 1.07995 * 120.00522 * 0.02562 * 14 13 12 37 37 H 1.08004 * 119.90183 * 179.72759 * 15 14 13 38 38 H 1.08007 * 119.89443 * 180.02562 * 16 15 14 39 39 H 1.08005 * 119.99865 * 180.02562 * 17 16 15 40 40 H 0.97005 * 119.99784 * 213.75343 * 19 18 17 41 41 H 1.08999 * 110.85557 * 271.56522 * 23 22 20 42 42 H 1.09001 * 110.85991 * 35.01592 * 23 22 20 43 43 H 1.09005 * 110.78722 * 90.80880 * 26 24 23 44 44 H 1.08998 * 111.04249 * 327.16428 * 26 24 23 45 45 H 1.09004 * 110.19041 * 266.58527 * 27 26 24 46 46 H 1.08998 * 110.19277 * 144.73085 * 27 26 24 47 47 H 1.09004 * 110.52011 * 248.45501 * 28 27 26 48 48 H 1.09005 * 110.63842 * 125.77420 * 28 27 26 49 49 H 1.09009 * 110.43332 * 292.42369 * 31 22 20 50 50 H 1.08998 * 110.43241 * 54.79808 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3212 -1.1204 -4.0080 9 1 1.3426 -2.1617 -4.4119 10 1 2.4865 -0.1414 -5.1124 11 1 3.6292 -1.7585 -3.7123 12 16 2.1347 -0.8552 1.4810 13 6 1.8172 0.3067 2.7670 14 6 1.2290 1.5285 2.4716 15 6 0.9865 2.4405 3.4813 16 6 1.3229 2.1373 4.7880 17 6 1.9032 0.9199 5.0923 18 6 2.1502 -0.0013 4.0863 19 7 2.7390 -1.2361 4.3927 20 6 2.4706 -1.8374 5.5687 21 8 1.7954 -1.2664 6.4032 22 7 2.9506 -3.0716 5.8195 23 6 2.7381 -3.8644 7.0718 24 6 2.8628 -5.2934 6.5769 25 1 2.0093 -5.5759 5.9604 26 6 3.3314 -6.4356 7.4524 27 6 3.9909 -7.3938 6.4082 28 6 4.4326 -6.4855 5.2196 29 6 4.1775 -5.0937 5.7127 30 1 4.9759 -4.8105 6.3985 31 6 3.7899 -3.8957 4.8974 32 1 -0.3633 -1.0250 0.0739 33 1 -0.3633 0.5764 0.8508 34 1 -0.3632 0.4485 -0.9246 35 1 0.7088 1.1613 -3.4844 36 1 0.9647 1.7682 1.4523 37 1 0.5328 3.3927 3.2492 38 1 1.1308 2.8535 5.5733 39 1 2.1641 0.6865 6.1140 40 1 3.3398 -1.6576 3.7584 41 1 3.5095 -3.6402 7.8086 42 1 1.7456 -3.6814 7.4834 43 1 2.4866 -6.9175 7.9447 44 1 4.0631 -6.0932 8.1840 45 1 3.2672 -8.1342 6.0672 46 1 4.8579 -7.8882 6.8463 47 1 3.8305 -6.6940 4.3352 48 1 5.4914 -6.6257 5.0017 49 1 3.2108 -4.1998 4.0253 50 1 4.6756 -3.3398 4.5900 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246604604.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:30 Heat of formation + Delta-G solvation = 10.993293 kcal Electronic energy + Delta-G solvation = -29733.702904 eV Core-core repulsion = 25852.140898 eV Total energy + Delta-G solvation = -3881.562007 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.02237 -39.76118 -38.03435 -35.13868 -34.64556 -34.09019 -31.07430 -30.76302 -30.16125 -29.90816 -28.42740 -26.54863 -25.39437 -23.95931 -22.61554 -22.18643 -21.21344 -20.67912 -20.19308 -19.81119 -18.23110 -17.54035 -16.91712 -16.16126 -16.05660 -15.71673 -15.22062 -15.17738 -14.98298 -14.64527 -14.39961 -14.16618 -13.87547 -13.57182 -13.34218 -13.20924 -12.78374 -12.65776 -12.52182 -12.39347 -11.98144 -11.87637 -11.70196 -11.58352 -11.53136 -11.26949 -11.13073 -11.07298 -11.04775 -10.77897 -10.63640 -10.50568 -10.40024 -10.23750 -10.05222 -9.76350 -9.45997 -9.08608 -8.95877 -8.84920 -8.52797 -7.91385 -6.54134 -6.24605 -4.34169 1.63169 1.79058 2.32421 2.54999 3.18673 3.19615 3.26380 3.30062 3.48885 3.60871 3.91410 4.17659 4.26925 4.28745 4.39907 4.63512 4.82878 4.93578 4.95400 5.07428 5.10990 5.20206 5.26439 5.33534 5.38301 5.40074 5.42842 5.52210 5.59058 5.61224 5.64954 5.69893 5.75226 5.87121 5.89854 5.97357 5.99819 6.05506 6.29431 6.53776 6.55235 6.64108 6.73095 6.79726 6.83313 6.93946 7.00572 7.28837 7.38667 7.57927 7.74758 7.87980 7.99345 8.54565 8.64699 9.30174 10.81215 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.009241 B = 0.002893 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.240784 B = 9674.880712 C =12351.888777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.100 3.900 3 H 0.052 0.948 4 C -0.511 4.511 5 H 0.067 0.933 6 C 0.071 3.929 7 N -0.885 5.885 8 Si 0.906 3.094 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 S -0.175 6.175 13 C -0.089 4.089 14 C -0.118 4.118 15 C -0.118 4.118 16 C -0.125 4.125 17 C -0.109 4.109 18 C 0.164 3.836 19 N -0.673 5.673 20 C 0.726 3.274 21 O -0.577 6.577 22 N -0.643 5.643 23 C 0.145 3.855 24 C -0.126 4.126 25 H 0.092 0.908 26 C -0.103 4.103 27 C -0.122 4.122 28 C -0.101 4.101 29 C -0.123 4.123 30 H 0.077 0.923 31 C 0.116 3.884 32 H 0.038 0.962 33 H 0.021 0.979 34 H 0.096 0.904 35 H 0.266 0.734 36 H 0.139 0.861 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.140 0.860 40 H 0.408 0.592 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.075 0.925 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.881 -10.543 17.688 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 H 0.070 0.930 4 C -0.550 4.550 5 H 0.085 0.915 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.733 3.267 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.196 1.196 12 S 0.073 5.927 13 C -0.205 4.205 14 C -0.143 4.143 15 C -0.139 4.139 16 C -0.147 4.147 17 C -0.131 4.131 18 C 0.063 3.937 19 N -0.320 5.320 20 C 0.429 3.571 21 O -0.455 6.455 22 N -0.383 5.383 23 C 0.023 3.977 24 C -0.145 4.145 25 H 0.110 0.890 26 C -0.141 4.141 27 C -0.159 4.159 28 C -0.139 4.139 29 C -0.142 4.142 30 H 0.095 0.905 31 C -0.006 4.006 32 H 0.057 0.943 33 H 0.040 0.960 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.157 0.843 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.157 0.843 40 H 0.245 0.755 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.808 -11.143 18.097 22.032 hybrid contribution 0.009 0.681 -1.355 1.517 sum 5.817 -10.462 16.741 20.581 Atomic orbital electron populations 1.22139 0.96284 1.00120 1.01811 1.21087 0.95653 0.97358 0.88643 0.93011 1.20642 1.32528 1.13229 0.88630 0.91525 1.24889 0.94669 0.94940 0.98860 1.69853 1.35802 1.22478 1.24167 0.86360 0.79387 0.79289 0.81682 1.20362 1.20932 1.19594 1.85005 1.78204 1.27205 1.02330 1.21780 1.03216 0.99589 0.95924 1.21323 0.99666 0.92631 1.00640 1.21025 1.00886 0.99225 0.92775 1.20928 1.00833 0.96584 0.96312 1.21153 1.00526 0.92159 0.99295 1.16956 0.99833 0.85077 0.91844 1.42531 1.49362 1.21015 1.19065 1.15327 0.79679 0.79780 0.82296 1.90894 1.43838 1.64094 1.46650 1.48872 1.55490 1.15086 1.18825 1.21530 1.02311 0.88336 0.85560 1.22817 0.98512 0.94043 0.99151 0.88985 1.21815 1.00200 0.95039 0.97029 1.22953 1.00301 0.97700 0.94972 1.21374 1.01704 0.92396 0.98450 1.21954 0.98578 0.94651 0.98980 0.90475 1.21232 0.94801 0.91557 0.93022 0.94266 0.96034 0.88546 0.92381 0.84343 0.86227 0.86257 0.84275 0.75500 0.91256 0.90052 0.91168 0.91026 0.91320 0.91454 0.91066 0.91176 0.90676 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.64 37.16 0.32 -3.07 16 2 C 0.10 2.42 1.97 -27.87 -0.05 2.37 16 3 H 0.05 1.34 6.88 -51.93 -0.36 0.98 16 4 C -0.51 -13.46 8.58 -34.44 -0.30 -13.75 16 5 H 0.07 1.76 7.71 -52.49 -0.40 1.35 16 6 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 7 N -0.89 -23.85 11.29 55.43 0.63 -23.22 16 8 Si 0.91 20.36 29.54 -169.99 -5.02 15.34 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 12 S -0.17 -3.69 20.06 -107.50 -2.16 -5.85 16 13 C -0.09 -1.76 6.11 -38.91 -0.24 -2.00 16 14 C -0.12 -2.25 8.27 -39.39 -0.33 -2.57 16 15 C -0.12 -1.93 10.04 -39.57 -0.40 -2.33 16 16 C -0.12 -1.95 10.04 -39.56 -0.40 -2.35 16 17 C -0.11 -1.90 8.71 -39.43 -0.34 -2.24 16 18 C 0.16 3.00 6.34 -83.42 -0.53 2.47 16 19 N -0.67 -10.98 5.01 -14.06 -0.07 -11.05 16 20 C 0.73 11.70 8.39 -86.92 -0.73 10.97 16 21 O -0.58 -10.88 14.00 5.28 0.07 -10.81 16 22 N -0.64 -7.97 3.43 -176.75 -0.61 -8.57 16 23 C 0.14 1.44 6.68 -2.88 -0.02 1.42 16 24 C -0.13 -0.97 3.20 -89.00 -0.29 -1.26 16 25 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 26 C -0.10 -0.59 6.58 -25.78 -0.17 -0.76 16 27 C -0.12 -0.66 6.95 -23.36 -0.16 -0.82 16 28 C -0.10 -0.64 6.72 -26.70 -0.18 -0.81 16 29 C -0.12 -0.92 2.64 -90.58 -0.24 -1.16 16 30 H 0.08 0.57 7.95 -51.93 -0.41 0.15 16 31 C 0.12 1.13 6.19 -3.88 -0.02 1.10 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.02 0.46 6.05 -51.93 -0.31 0.14 16 34 H 0.10 2.46 5.97 -51.93 -0.31 2.15 16 35 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.14 2.80 4.64 -52.49 -0.24 2.55 16 37 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 38 H 0.12 1.52 8.06 -52.48 -0.42 1.09 16 39 H 0.14 2.42 6.10 -52.48 -0.32 2.10 16 40 H 0.41 6.14 6.89 -40.82 -0.28 5.86 16 41 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 42 H 0.08 0.89 8.07 -51.93 -0.42 0.48 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 50 H 0.07 0.66 8.04 -51.93 -0.42 0.24 16 LS Contribution 400.13 15.07 6.03 6.03 Total: -1.00 -29.57 400.13 -12.97 -42.54 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -7.69 Total: 8.63 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -4.16 Total: -13.04 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.05 Total: -42.84 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.07 Total: -10.81 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -2.16 Total: -5.85 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.57 -12.97 -42.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246604604.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.538 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds