Wall clock time and date at job start Tue Mar 31 2020 06:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47415 * 2 1 4 4 C 1.50710 * 109.46871 * 239.99825 * 2 1 3 5 5 H 1.07994 * 119.99999 * 240.00259 * 4 2 1 6 6 C 1.37871 * 119.99540 * 60.00368 * 4 2 1 7 7 N 1.31512 * 120.00521 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99813 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47354 * 89.99716 * 8 6 4 10 10 H 1.48502 * 109.47230 * 209.99932 * 8 6 4 11 11 H 1.48504 * 109.47037 * 329.99726 * 8 6 4 12 12 S 1.81394 * 109.47033 * 120.00433 * 2 1 3 13 13 C 1.76198 * 102.99943 * 286.12795 * 12 2 1 14 14 C 1.38782 * 120.10157 * 0.10943 * 13 12 2 15 15 C 1.38207 * 119.98451 * 180.29245 * 14 13 12 16 16 C 1.38289 * 120.19890 * 359.70809 * 15 14 13 17 17 C 1.38254 * 120.20631 * 359.97438 * 16 15 14 18 18 C 1.38628 * 120.01089 * 0.02562 * 17 16 15 19 19 N 1.40194 * 120.09896 * 179.97438 * 18 17 16 20 20 C 1.34776 * 120.00326 * 33.74661 * 19 18 17 21 21 O 1.21592 * 119.99727 * 354.72330 * 20 19 18 22 22 N 1.34776 * 120.00327 * 174.72281 * 20 19 18 23 23 C 1.49726 * 126.16193 * 180.02562 * 22 20 19 24 24 C 1.51744 * 102.37248 * 153.29230 * 23 22 20 25 25 H 1.09002 * 111.35480 * 289.43521 * 24 23 22 26 26 C 1.51350 * 123.19221 * 152.06925 * 24 23 22 27 27 C 1.56315 * 101.93497 * 208.93069 * 26 24 23 28 28 C 1.55971 * 105.75736 * 25.65807 * 27 26 24 29 29 C 1.49849 * 104.00155 * 7.08487 * 28 27 26 30 30 H 1.08999 * 108.88371 * 77.47486 * 29 28 27 31 31 C 1.49467 * 126.15968 * 359.97438 * 22 20 19 32 32 H 1.08999 * 109.47015 * 184.12163 * 1 2 3 33 33 H 1.08997 * 109.46813 * 304.11837 * 1 2 3 34 34 H 1.08993 * 109.46703 * 64.12285 * 1 2 3 35 35 H 0.97004 * 120.00529 * 179.97438 * 7 6 4 36 36 H 1.07995 * 120.00522 * 0.02562 * 14 13 12 37 37 H 1.08004 * 119.90183 * 179.72759 * 15 14 13 38 38 H 1.08007 * 119.89443 * 180.02562 * 16 15 14 39 39 H 1.08005 * 119.99865 * 180.02562 * 17 16 15 40 40 H 0.97005 * 119.99784 * 213.75343 * 19 18 17 41 41 H 1.08999 * 110.85557 * 271.56522 * 23 22 20 42 42 H 1.09001 * 110.85991 * 35.01592 * 23 22 20 43 43 H 1.09005 * 110.78722 * 90.80880 * 26 24 23 44 44 H 1.08998 * 111.04249 * 327.16428 * 26 24 23 45 45 H 1.09004 * 110.19041 * 266.58527 * 27 26 24 46 46 H 1.08998 * 110.19277 * 144.73085 * 27 26 24 47 47 H 1.09004 * 110.52011 * 248.45501 * 28 27 26 48 48 H 1.09005 * 110.63842 * 125.77420 * 28 27 26 49 49 H 1.09009 * 110.43332 * 292.42369 * 31 22 20 50 50 H 1.08998 * 110.43241 * 54.79808 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3212 -1.1204 -4.0080 9 1 1.3426 -2.1617 -4.4119 10 1 2.4865 -0.1414 -5.1124 11 1 3.6292 -1.7585 -3.7123 12 16 2.1347 -0.8552 1.4810 13 6 1.8172 0.3067 2.7670 14 6 1.2290 1.5285 2.4716 15 6 0.9865 2.4405 3.4813 16 6 1.3229 2.1373 4.7880 17 6 1.9032 0.9199 5.0923 18 6 2.1502 -0.0013 4.0863 19 7 2.7390 -1.2361 4.3927 20 6 2.4706 -1.8374 5.5687 21 8 1.7954 -1.2664 6.4032 22 7 2.9506 -3.0716 5.8195 23 6 2.7381 -3.8644 7.0718 24 6 2.8628 -5.2934 6.5769 25 1 2.0093 -5.5759 5.9604 26 6 3.3314 -6.4356 7.4524 27 6 3.9909 -7.3938 6.4082 28 6 4.4326 -6.4855 5.2196 29 6 4.1775 -5.0937 5.7127 30 1 4.9759 -4.8105 6.3985 31 6 3.7899 -3.8957 4.8974 32 1 -0.3633 -1.0250 0.0739 33 1 -0.3633 0.5764 0.8508 34 1 -0.3632 0.4485 -0.9246 35 1 0.7088 1.1613 -3.4844 36 1 0.9647 1.7682 1.4523 37 1 0.5328 3.3927 3.2492 38 1 1.1308 2.8535 5.5733 39 1 2.1641 0.6865 6.1140 40 1 3.3398 -1.6576 3.7584 41 1 3.5095 -3.6402 7.8086 42 1 1.7456 -3.6814 7.4834 43 1 2.4866 -6.9175 7.9447 44 1 4.0631 -6.0932 8.1840 45 1 3.2672 -8.1342 6.0672 46 1 4.8579 -7.8882 6.8463 47 1 3.8305 -6.6940 4.3352 48 1 5.4914 -6.6257 5.0017 49 1 3.2108 -4.1998 4.0253 50 1 4.6756 -3.3398 4.5900 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246604604.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:28 Heat of formation + Delta-G solvation = -2.210931 kcal Electronic energy + Delta-G solvation = -29734.275482 eV Core-core repulsion = 25852.140898 eV Total energy + Delta-G solvation = -3882.134585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.01344 -40.80024 -39.30334 -36.29141 -36.01301 -35.70372 -32.81169 -31.62321 -31.46872 -31.11035 -29.50266 -27.40224 -27.21340 -24.89774 -23.96770 -23.65366 -22.88981 -21.33282 -21.09086 -20.69696 -19.54311 -18.80629 -18.28690 -17.89101 -17.14855 -16.93847 -16.76514 -16.29237 -15.97591 -15.68856 -15.59250 -15.32413 -15.01861 -14.90463 -14.81068 -14.43489 -14.21315 -13.85984 -13.72951 -13.38467 -13.26627 -13.16372 -12.93736 -12.87666 -12.76200 -12.53383 -12.47626 -12.25668 -12.11457 -12.04207 -11.84854 -11.73318 -11.49949 -11.38461 -11.25785 -11.13043 -10.96692 -10.82528 -10.58643 -10.46684 -9.89983 -9.26610 -8.24270 -8.15743 -6.41401 0.25069 0.38012 0.82021 1.32919 1.41863 1.42953 1.53599 1.85317 1.94544 2.37988 2.63323 2.80095 2.98213 3.05248 3.67380 3.77312 3.91880 4.05468 4.15680 4.22065 4.27309 4.33206 4.37253 4.47341 4.50261 4.52031 4.56238 4.58430 4.64553 4.71957 4.79253 4.80703 4.86251 4.88112 4.89799 4.92433 5.06506 5.12307 5.22426 5.24997 5.29208 5.30060 5.31725 5.45636 5.48897 5.53096 5.56073 5.58287 5.74512 5.84652 6.01584 6.04034 6.61103 6.67918 7.26269 7.29831 8.81071 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.009241 B = 0.002893 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.240784 B = 9674.880712 C =12351.888777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.098 3.902 3 H 0.028 0.972 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.027 3.973 7 N -0.909 5.909 8 Si 0.967 3.033 9 H -0.273 1.273 10 H -0.278 1.278 11 H -0.267 1.267 12 S -0.170 6.170 13 C -0.113 4.113 14 C -0.133 4.133 15 C -0.115 4.115 16 C -0.109 4.109 17 C -0.118 4.118 18 C 0.159 3.841 19 N -0.672 5.672 20 C 0.720 3.280 21 O -0.609 6.609 22 N -0.641 5.641 23 C 0.140 3.860 24 C -0.119 4.119 25 H 0.079 0.921 26 C -0.098 4.098 27 C -0.118 4.118 28 C -0.101 4.101 29 C -0.115 4.115 30 H 0.086 0.914 31 C 0.111 3.889 32 H 0.033 0.967 33 H 0.034 0.966 34 H 0.075 0.925 35 H 0.269 0.731 36 H 0.121 0.879 37 H 0.150 0.850 38 H 0.158 0.842 39 H 0.140 0.860 40 H 0.412 0.588 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.064 0.936 48 H 0.080 0.920 49 H 0.067 0.933 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.801 -11.477 19.022 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.029 4.029 3 H 0.045 0.955 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.175 4.175 7 N -0.547 5.547 8 Si 0.792 3.208 9 H -0.198 1.198 10 H -0.204 1.204 11 H -0.192 1.192 12 S 0.076 5.924 13 C -0.228 4.228 14 C -0.157 4.157 15 C -0.136 4.136 16 C -0.130 4.130 17 C -0.139 4.139 18 C 0.058 3.942 19 N -0.319 5.319 20 C 0.423 3.577 21 O -0.489 6.489 22 N -0.380 5.380 23 C 0.019 3.981 24 C -0.139 4.139 25 H 0.098 0.902 26 C -0.135 4.135 27 C -0.155 4.155 28 C -0.139 4.139 29 C -0.134 4.134 30 H 0.104 0.896 31 C -0.010 4.010 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.139 0.861 37 H 0.168 0.832 38 H 0.175 0.825 39 H 0.158 0.842 40 H 0.249 0.751 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.083 0.917 48 H 0.099 0.901 49 H 0.086 0.914 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.747 -12.112 19.450 23.886 hybrid contribution -0.278 1.020 -1.634 1.946 sum 6.469 -11.093 17.816 21.961 Atomic orbital electron populations 1.21957 0.96038 0.99657 1.01264 1.20837 0.95828 0.96246 0.90033 0.95451 1.20905 1.32905 1.13384 0.89943 0.92116 1.25673 0.94692 0.95549 1.01556 1.69960 1.36408 1.23454 1.24876 0.85406 0.78961 0.78296 0.78162 1.19808 1.20373 1.19155 1.84717 1.78770 1.27400 1.01464 1.21768 1.05390 0.99855 0.95804 1.21331 1.00411 0.93283 1.00668 1.21331 1.00190 0.99726 0.92324 1.21349 0.98382 0.96309 0.96926 1.21328 1.00912 0.92719 0.98988 1.17118 0.99616 0.85974 0.91482 1.42509 1.49335 1.20685 1.19374 1.15485 0.79715 0.80705 0.81795 1.90854 1.45342 1.65275 1.47461 1.49029 1.54761 1.14063 1.20099 1.21717 1.02043 0.89368 0.84962 1.22755 0.98261 0.93351 0.99497 0.90237 1.21835 1.00688 0.94026 0.96998 1.22941 1.00832 0.97399 0.94358 1.21410 1.02312 0.91483 0.98652 1.21932 0.98540 0.94466 0.98485 0.89605 1.21395 0.94500 0.92363 0.92756 0.94764 0.94719 0.90599 0.92192 0.86122 0.83226 0.82488 0.84239 0.75076 0.89824 0.91463 0.90519 0.90007 0.91128 0.90122 0.91708 0.90142 0.91421 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.30 8.64 71.98 0.62 -5.68 16 2 C 0.10 4.94 1.97 29.85 0.06 5.00 16 3 H 0.03 1.49 6.88 -2.39 -0.02 1.48 16 4 C -0.53 -28.70 8.58 25.60 0.22 -28.48 16 5 H 0.06 3.27 7.71 -2.91 -0.02 3.24 16 6 C 0.03 1.44 5.29 84.65 0.45 1.89 16 7 N -0.91 -49.88 11.29 21.44 0.24 -49.64 16 8 Si 0.97 41.89 29.54 68.60 2.03 43.92 16 9 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 12 S -0.17 -7.36 20.06 -56.49 -1.13 -8.49 16 13 C -0.11 -4.50 6.11 22.71 0.14 -4.36 16 14 C -0.13 -5.07 8.27 22.39 0.19 -4.88 16 15 C -0.12 -3.57 10.04 22.27 0.22 -3.34 16 16 C -0.11 -3.13 10.04 22.29 0.22 -2.91 16 17 C -0.12 -3.95 8.71 22.37 0.19 -3.75 16 18 C 0.16 5.84 6.34 38.20 0.24 6.08 16 19 N -0.67 -22.11 5.01 -316.67 -1.59 -23.70 16 20 C 0.72 23.31 8.39 179.05 1.50 24.81 16 21 O -0.61 -23.06 14.00 -4.01 -0.06 -23.11 16 22 N -0.64 -15.73 3.43 -831.37 -2.85 -18.58 16 23 C 0.14 2.69 6.68 85.34 0.57 3.26 16 24 C -0.12 -1.70 3.20 -9.74 -0.03 -1.73 16 25 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 26 C -0.10 -0.90 6.58 31.21 0.21 -0.69 16 27 C -0.12 -0.98 6.95 32.78 0.23 -0.75 16 28 C -0.10 -1.06 6.72 30.61 0.21 -0.86 16 29 C -0.12 -1.54 2.64 -10.77 -0.03 -1.57 16 30 H 0.09 1.05 7.95 -2.39 -0.02 1.03 16 31 C 0.11 2.09 6.19 84.84 0.53 2.62 16 32 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.03 1.54 6.05 -2.39 -0.01 1.52 16 34 H 0.08 3.99 5.97 -2.39 -0.01 3.98 16 35 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 36 H 0.12 5.03 4.64 -2.91 -0.01 5.02 16 37 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 38 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 39 H 0.14 4.73 6.10 -2.91 -0.02 4.72 16 40 H 0.41 12.57 6.89 -92.70 -0.64 11.93 16 41 H 0.08 1.38 8.13 -2.39 -0.02 1.36 16 42 H 0.07 1.48 8.07 -2.39 -0.02 1.47 16 43 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 46 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 48 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 49 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 50 H 0.08 1.40 8.04 -2.39 -0.02 1.38 16 Total: -1.00 -64.80 400.13 2.69 -62.11 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.31 Total: 32.86 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 5.73 Total: -15.35 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -4.19 Total: -91.92 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.06 Total: -23.11 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: -7.36 SS G_CDS: -1.13 Total: -8.49 kcal Total: -64.80 2.69 -62.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246604604.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.897 kcal (2) G-P(sol) polarization free energy of solvation -64.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds