Wall clock time and date at job start Tue Mar 31 2020 05:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 117.00358 * 2 1 4 4 O 1.20828 * 120.00008 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00435 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47477 * 300.00047 * 5 3 2 7 7 N 1.46901 * 109.47358 * 179.97438 * 5 3 2 8 8 C 1.46899 * 110.99960 * 85.00253 * 7 5 3 9 9 C 1.50693 * 109.47054 * 180.02562 * 8 7 5 10 10 O 1.21286 * 120.00253 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00163 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00174 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47254 * 89.99778 * 12 11 9 14 14 H 1.08007 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00302 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99812 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00074 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47078 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47115 * 120.00120 * 17 15 13 20 20 H 1.48498 * 109.46734 * 239.99870 * 17 15 13 21 21 C 1.46502 * 119.99899 * 359.97438 * 11 9 8 22 22 C 1.52992 * 109.47370 * 90.00184 * 21 11 9 23 23 C 1.47199 * 109.47387 * 180.02562 * 22 21 11 24 24 N 8.05566 * 115.92083 * 65.82335 * 2 1 3 25 25 C 1.50703 * 109.47313 * 59.99594 * 5 3 2 26 26 C 1.38235 * 120.00292 * 260.00391 * 25 5 3 27 27 C 1.38230 * 119.99899 * 179.97438 * 26 25 5 28 28 C 1.38235 * 120.00326 * 359.95697 * 27 26 25 29 29 C 1.38234 * 119.99814 * 359.97438 * 28 27 26 30 30 C 1.38234 * 119.99503 * 79.97683 * 25 5 3 31 31 H 1.09003 * 109.46434 * 60.00584 * 1 2 3 32 32 H 1.09000 * 109.47516 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47141 * 300.00414 * 1 2 3 34 34 H 1.00893 * 111.00055 * 321.04642 * 7 5 3 35 35 H 1.09002 * 109.46800 * 299.99937 * 8 7 5 36 36 H 1.09001 * 109.47305 * 59.99447 * 8 7 5 37 37 H 1.08996 * 109.47366 * 209.99450 * 12 11 9 38 38 H 1.08999 * 109.47426 * 330.00227 * 12 11 9 39 39 H 0.97001 * 119.99703 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.46832 * 210.00433 * 21 11 9 41 41 H 1.09009 * 109.46917 * 330.00132 * 21 11 9 42 42 H 1.09003 * 109.47010 * 300.00345 * 22 21 11 43 43 H 1.08996 * 109.47280 * 59.99743 * 22 21 11 44 44 H 1.08001 * 119.99730 * 359.97438 * 26 25 5 45 45 H 1.08000 * 120.00376 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.00616 * 179.72578 * 28 27 26 47 47 H 1.08001 * 120.00299 * 179.97438 * 29 28 27 48 48 H 1.07997 * 120.00455 * 0.02562 * 30 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9558 0.7809 0.8908 7 7 3.9829 2.6835 -0.0002 8 6 4.0170 3.2231 1.3657 9 6 4.4469 4.6668 1.3248 10 8 4.7005 5.1943 0.2625 11 7 4.5497 5.3720 2.4688 12 6 4.9682 6.7754 2.4291 13 6 3.7545 7.6578 2.2901 14 1 2.7699 7.2173 2.2363 15 6 3.9011 9.0275 2.2307 16 7 5.1001 9.5639 2.2957 17 14 2.3965 10.1213 2.0591 18 1 1.1750 9.2784 2.0085 19 1 2.3169 11.0398 3.2232 20 1 2.5018 10.9151 0.8085 21 6 4.2430 4.7351 3.7520 22 6 5.5140 4.1061 4.3260 23 6 5.2057 3.4657 5.6150 24 7 4.9734 2.9673 6.6098 25 6 4.1057 0.5913 -1.2295 26 6 4.6001 -0.6968 -1.1439 27 6 5.0944 -1.3238 -2.2723 28 6 5.0934 -0.6631 -3.4865 29 6 4.5977 0.6244 -3.5725 30 6 4.1055 1.2523 -2.4435 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 3.3832 3.2375 -0.5929 35 1 3.0237 3.1525 1.8091 36 1 4.7241 2.6498 1.9653 37 1 5.4944 7.0239 3.3508 38 1 5.6312 6.9330 1.5784 39 1 5.2033 10.5275 2.2535 40 1 3.8620 5.4834 4.4471 41 1 3.4900 3.9611 3.6027 42 1 5.8950 3.3580 3.6309 43 1 6.2669 4.8800 4.4753 44 1 4.6002 -1.2131 -0.1953 45 1 5.4810 -2.3300 -2.2054 46 1 5.4836 -1.1514 -4.3673 47 1 4.5973 1.1408 -4.5210 48 1 3.7192 2.2586 -2.5105 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263900999.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:32 Heat of formation + Delta-G solvation = -54.621808 kcal Electronic energy + Delta-G solvation = -31833.441959 eV Core-core repulsion = 27468.167365 eV Total energy + Delta-G solvation = -4365.274594 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.07061 -39.38518 -39.17183 -37.13399 -36.82076 -35.64033 -35.12134 -32.92173 -31.89911 -31.04586 -30.84495 -28.80078 -28.08836 -26.71228 -24.94875 -24.00163 -22.84423 -22.48003 -22.20853 -20.65939 -18.81218 -18.09827 -17.71645 -17.36570 -17.17273 -16.59243 -16.49410 -16.31997 -15.80379 -15.25804 -15.19259 -14.99236 -14.69609 -14.44417 -14.18502 -13.84057 -13.66652 -13.64440 -13.47313 -13.32455 -13.04123 -12.84163 -12.60218 -12.47608 -12.43038 -12.30066 -12.18235 -11.91413 -11.65963 -11.37817 -11.27112 -11.17872 -11.05697 -10.99198 -10.95107 -10.84414 -10.63195 -10.18556 -9.68339 -9.14528 -9.05549 -8.96499 -8.69975 -8.46772 -7.84479 -6.08218 -4.12529 1.08970 1.27271 1.90234 2.44244 2.71150 2.79184 3.28211 3.28917 3.37239 3.38574 3.43602 3.66079 3.95913 4.27357 4.36123 4.43102 4.58516 4.59616 4.84717 4.85728 4.90732 4.93391 4.93954 4.97212 5.03277 5.10914 5.25407 5.27240 5.28204 5.33516 5.38197 5.45515 5.53082 5.74379 5.81500 5.88164 6.05800 6.07879 6.24315 6.31805 6.36594 6.53420 6.81729 6.95460 7.07585 7.36828 7.43217 7.44285 7.55798 7.88296 8.17984 8.25076 8.84451 8.98956 9.53126 10.99906 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.008523 B = 0.002782 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3284.605300 B =10061.996421 C =11000.322357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.434 3.566 4 O -0.499 6.499 5 C 0.139 3.861 6 H 0.126 0.874 7 N -0.634 5.634 8 C 0.029 3.971 9 C 0.511 3.489 10 O -0.517 6.517 11 N -0.597 5.597 12 C 0.246 3.754 13 C -0.528 4.528 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.896 3.104 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.117 3.883 22 C -0.051 4.051 23 C 0.217 3.783 24 N -0.446 5.446 25 C -0.073 4.073 26 C -0.098 4.098 27 C -0.124 4.124 28 C -0.116 4.116 29 C -0.121 4.121 30 C -0.088 4.088 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.367 0.633 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.035 0.965 38 H 0.047 0.953 39 H 0.263 0.737 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.130 -23.713 -5.878 24.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.269 6.269 3 C 0.274 3.726 4 O -0.385 6.385 5 C 0.026 3.974 6 H 0.143 0.857 7 N -0.268 5.268 8 C -0.103 4.103 9 C 0.297 3.703 10 O -0.392 6.392 11 N -0.330 5.330 12 C 0.127 3.873 13 C -0.567 4.567 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.724 3.276 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.010 4.010 22 C -0.092 4.092 23 C -0.101 4.101 24 N -0.123 5.123 25 C -0.074 4.074 26 C -0.116 4.116 27 C -0.142 4.142 28 C -0.134 4.134 29 C -0.139 4.139 30 C -0.107 4.107 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.190 0.810 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.091 0.909 42 H 0.125 0.875 43 H 0.136 0.864 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.815 -23.776 -4.990 24.361 hybrid contribution -1.911 1.115 -0.145 2.217 sum -3.726 -22.661 -5.135 23.533 Atomic orbital electron populations 1.23288 0.76530 1.03644 1.02659 1.86544 1.23308 1.33358 1.83665 1.25211 0.93338 0.81813 0.72287 1.90740 1.66671 1.36269 1.44866 1.20349 0.84852 0.92620 0.99572 0.85675 1.60648 1.55815 0.99715 1.10611 1.22120 1.01640 0.95666 0.90872 1.19992 0.78807 0.86965 0.84570 1.90709 1.48509 1.70866 1.29073 1.48184 1.66931 1.14038 1.03817 1.19352 0.96036 0.73290 0.98613 1.21461 0.93367 0.91154 1.50682 0.92364 1.24910 0.96051 0.97982 0.95017 1.69929 1.21388 1.11640 1.50263 0.86473 0.82987 0.80466 0.77697 1.19813 1.21002 1.20871 1.21309 0.93796 0.98232 0.87645 1.19918 1.01941 1.00701 0.86689 1.29146 0.93185 0.93149 0.94637 1.81236 1.08880 1.10241 1.11961 1.19202 1.00822 0.94303 0.93046 1.20942 0.97901 0.93809 0.98973 1.21066 1.00396 0.99992 0.92706 1.21190 0.99325 0.95096 0.97783 1.21155 0.99024 0.95181 0.98538 1.21035 0.98130 0.99637 0.91867 0.91875 0.88112 0.91844 0.80982 0.91877 0.88213 0.94676 0.93450 0.92737 0.88674 0.90877 0.87502 0.86351 0.85761 0.85954 0.86153 0.85877 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.35 -3.66 10.48 -39.24 -0.41 -4.07 16 3 C 0.43 5.17 7.07 36.00 0.25 5.43 16 4 O -0.50 -7.49 15.05 -18.75 -0.28 -7.77 16 5 C 0.14 1.47 2.70 -70.02 -0.19 1.28 16 6 H 0.13 1.01 7.66 -51.93 -0.40 0.62 16 7 N -0.63 -8.47 5.18 -110.46 -0.57 -9.04 16 8 C 0.03 0.39 4.41 -4.98 -0.02 0.36 16 9 C 0.51 9.42 7.71 -10.99 -0.08 9.34 16 10 O -0.52 -11.98 15.78 5.55 0.09 -11.89 16 11 N -0.60 -10.87 2.46 -175.06 -0.43 -11.30 16 12 C 0.25 5.81 5.16 -5.19 -0.03 5.78 16 13 C -0.53 -14.18 9.39 -34.44 -0.32 -14.51 16 14 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 17 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 C 0.12 1.54 5.17 -4.04 -0.02 1.52 16 22 C -0.05 -0.52 6.03 -29.52 -0.18 -0.69 16 23 C 0.22 2.55 15.44 -20.74 -0.32 2.23 16 24 N -0.45 -6.43 18.54 42.18 0.78 -5.65 16 25 C -0.07 -0.76 4.88 -104.62 -0.51 -1.27 16 26 C -0.10 -0.85 9.67 -39.59 -0.38 -1.24 16 27 C -0.12 -1.00 10.05 -39.59 -0.40 -1.40 16 28 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 29 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 30 C -0.09 -0.98 9.32 -39.58 -0.37 -1.35 16 31 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 34 H 0.37 5.66 6.79 -39.30 -0.27 5.40 16 35 H 0.06 0.81 6.88 -51.93 -0.36 0.46 16 36 H 0.10 0.98 7.10 -51.93 -0.37 0.61 16 37 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 38 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 41 H 0.07 0.82 6.44 -51.92 -0.33 0.48 16 42 H 0.11 0.85 7.22 -51.93 -0.37 0.48 16 43 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.12 0.82 8.04 -52.49 -0.42 0.40 16 45 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 46 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 47 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 48 H 0.13 1.48 7.25 -52.49 -0.38 1.10 16 LS Contribution 418.52 15.07 6.31 6.31 Total: -1.00 -35.25 418.52 -7.83 -43.08 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.63 Total: 3.22 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -2.40 Total: 5.52 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.52 Total: -50.83 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.61 Total: -23.73 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -35.25 -7.83 -43.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263900999.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.545 kcal (2) G-P(sol) polarization free energy of solvation -35.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds