Wall clock time and date at job start Tue Mar 31 2020 05:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 117.00358 * 2 1 4 4 O 1.20828 * 120.00008 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00435 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47477 * 300.00047 * 5 3 2 7 7 N 1.46901 * 109.47358 * 179.97438 * 5 3 2 8 8 C 1.46899 * 110.99960 * 85.00253 * 7 5 3 9 9 C 1.50693 * 109.47054 * 180.02562 * 8 7 5 10 10 O 1.21286 * 120.00253 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00163 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00174 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47254 * 89.99778 * 12 11 9 14 14 H 1.08007 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00302 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99812 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00074 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47078 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47115 * 120.00120 * 17 15 13 20 20 H 1.48498 * 109.46734 * 239.99870 * 17 15 13 21 21 C 1.46502 * 119.99899 * 359.97438 * 11 9 8 22 22 C 1.52992 * 109.47370 * 90.00184 * 21 11 9 23 23 C 1.47199 * 109.47387 * 180.02562 * 22 21 11 24 24 N 8.05566 * 115.92083 * 65.82335 * 2 1 3 25 25 C 1.50703 * 109.47313 * 59.99594 * 5 3 2 26 26 C 1.38235 * 120.00292 * 260.00391 * 25 5 3 27 27 C 1.38230 * 119.99899 * 179.97438 * 26 25 5 28 28 C 1.38235 * 120.00326 * 359.95697 * 27 26 25 29 29 C 1.38234 * 119.99814 * 359.97438 * 28 27 26 30 30 C 1.38234 * 119.99503 * 79.97683 * 25 5 3 31 31 H 1.09003 * 109.46434 * 60.00584 * 1 2 3 32 32 H 1.09000 * 109.47516 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47141 * 300.00414 * 1 2 3 34 34 H 1.00893 * 111.00055 * 321.04642 * 7 5 3 35 35 H 1.09002 * 109.46800 * 299.99937 * 8 7 5 36 36 H 1.09001 * 109.47305 * 59.99447 * 8 7 5 37 37 H 1.08996 * 109.47366 * 209.99450 * 12 11 9 38 38 H 1.08999 * 109.47426 * 330.00227 * 12 11 9 39 39 H 0.97001 * 119.99703 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.46832 * 210.00433 * 21 11 9 41 41 H 1.09009 * 109.46917 * 330.00132 * 21 11 9 42 42 H 1.09003 * 109.47010 * 300.00345 * 22 21 11 43 43 H 1.08996 * 109.47280 * 59.99743 * 22 21 11 44 44 H 1.08001 * 119.99730 * 359.97438 * 26 25 5 45 45 H 1.08000 * 120.00376 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.00616 * 179.72578 * 28 27 26 47 47 H 1.08001 * 120.00299 * 179.97438 * 29 28 27 48 48 H 1.07997 * 120.00455 * 0.02562 * 30 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9558 0.7809 0.8908 7 7 3.9829 2.6835 -0.0002 8 6 4.0170 3.2231 1.3657 9 6 4.4469 4.6668 1.3248 10 8 4.7005 5.1943 0.2625 11 7 4.5497 5.3720 2.4688 12 6 4.9682 6.7754 2.4291 13 6 3.7545 7.6578 2.2901 14 1 2.7699 7.2173 2.2363 15 6 3.9011 9.0275 2.2307 16 7 5.1001 9.5639 2.2957 17 14 2.3965 10.1213 2.0591 18 1 1.1750 9.2784 2.0085 19 1 2.3169 11.0398 3.2232 20 1 2.5018 10.9151 0.8085 21 6 4.2430 4.7351 3.7520 22 6 5.5140 4.1061 4.3260 23 6 5.2057 3.4657 5.6150 24 7 4.9734 2.9673 6.6098 25 6 4.1057 0.5913 -1.2295 26 6 4.6001 -0.6968 -1.1439 27 6 5.0944 -1.3238 -2.2723 28 6 5.0934 -0.6631 -3.4865 29 6 4.5977 0.6244 -3.5725 30 6 4.1055 1.2523 -2.4435 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 3.3832 3.2375 -0.5929 35 1 3.0237 3.1525 1.8091 36 1 4.7241 2.6498 1.9653 37 1 5.4944 7.0239 3.3508 38 1 5.6312 6.9330 1.5784 39 1 5.2033 10.5275 2.2535 40 1 3.8620 5.4834 4.4471 41 1 3.4900 3.9611 3.6027 42 1 5.8950 3.3580 3.6309 43 1 6.2669 4.8800 4.4753 44 1 4.6002 -1.2131 -0.1953 45 1 5.4810 -2.3300 -2.2054 46 1 5.4836 -1.1514 -4.3673 47 1 4.5973 1.1408 -4.5210 48 1 3.7192 2.2586 -2.5105 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263900999.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:31 Heat of formation + Delta-G solvation = -76.891538 kcal Electronic energy + Delta-G solvation = -31834.407647 eV Core-core repulsion = 27468.167365 eV Total energy + Delta-G solvation = -4366.240282 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.96501 -40.72166 -39.95318 -38.07754 -37.86326 -36.77953 -36.38159 -34.86381 -32.81169 -32.12902 -31.71900 -29.89687 -29.22080 -27.93086 -26.07201 -25.30173 -24.16844 -23.34115 -23.10831 -21.46396 -20.13597 -18.98393 -18.85181 -18.45463 -18.29419 -17.99857 -17.68082 -17.29072 -17.03822 -16.42729 -16.27532 -15.99812 -15.82037 -15.65506 -15.21588 -14.86817 -14.67810 -14.64673 -14.36568 -14.29941 -14.13823 -14.03251 -13.60997 -13.58699 -13.51927 -13.37841 -13.28295 -13.05450 -12.93157 -12.89511 -12.68843 -12.52838 -12.19181 -12.10121 -11.92443 -11.86010 -11.83209 -11.77603 -11.64982 -10.60473 -10.59282 -9.82861 -9.72071 -9.61614 -9.46324 -8.18734 -6.30489 0.38618 0.58846 1.01721 1.36887 1.39883 1.50069 1.64459 1.70826 1.85738 1.89583 2.21548 2.42204 2.81030 3.07180 3.12881 3.22725 3.57903 3.73058 3.81441 3.87976 4.02968 4.12643 4.22059 4.24453 4.26402 4.28165 4.34025 4.35372 4.39410 4.61827 4.66871 4.69985 4.78600 4.85549 5.06264 5.06881 5.10561 5.22125 5.25637 5.34188 5.48688 5.61177 5.63299 5.69996 5.76351 5.89379 5.92596 6.13364 6.16647 6.57215 6.62334 6.74740 6.81766 7.34233 7.52718 8.87993 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.008523 B = 0.002782 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3284.605300 B =10061.996421 C =11000.322357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.350 6.350 3 C 0.438 3.562 4 O -0.538 6.538 5 C 0.143 3.857 6 H 0.160 0.840 7 N -0.646 5.646 8 C 0.042 3.958 9 C 0.504 3.496 10 O -0.575 6.575 11 N -0.598 5.598 12 C 0.261 3.739 13 C -0.539 4.539 14 H 0.049 0.951 15 C 0.013 3.987 16 N -0.924 5.924 17 Si 0.955 3.045 18 H -0.272 1.272 19 H -0.271 1.271 20 H -0.284 1.284 21 C 0.112 3.888 22 C -0.037 4.037 23 C 0.246 3.754 24 N -0.489 5.489 25 C -0.085 4.085 26 C -0.097 4.097 27 C -0.123 4.123 28 C -0.118 4.118 29 C -0.135 4.135 30 C -0.114 4.114 31 H 0.054 0.946 32 H 0.135 0.865 33 H 0.060 0.940 34 H 0.350 0.650 35 H 0.072 0.928 36 H 0.146 0.854 37 H 0.037 0.963 38 H 0.005 0.995 39 H 0.266 0.734 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.141 0.859 43 H 0.122 0.878 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.143 0.857 47 H 0.129 0.871 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.259 -26.931 -5.064 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.265 6.265 3 C 0.280 3.720 4 O -0.427 6.427 5 C 0.031 3.969 6 H 0.177 0.823 7 N -0.278 5.278 8 C -0.089 4.089 9 C 0.292 3.708 10 O -0.454 6.454 11 N -0.329 5.329 12 C 0.140 3.860 13 C -0.578 4.578 14 H 0.067 0.933 15 C -0.187 4.187 16 N -0.564 5.564 17 Si 0.781 3.219 18 H -0.196 1.196 19 H -0.197 1.197 20 H -0.210 1.210 21 C -0.013 4.013 22 C -0.078 4.078 23 C -0.071 4.071 24 N -0.167 5.167 25 C -0.086 4.086 26 C -0.116 4.116 27 C -0.141 4.141 28 C -0.136 4.136 29 C -0.153 4.153 30 C -0.133 4.133 31 H 0.073 0.927 32 H 0.153 0.847 33 H 0.079 0.921 34 H 0.171 0.829 35 H 0.090 0.910 36 H 0.163 0.837 37 H 0.055 0.945 38 H 0.023 0.977 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.159 0.841 43 H 0.139 0.861 44 H 0.169 0.831 45 H 0.169 0.831 46 H 0.161 0.839 47 H 0.147 0.853 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.950 -27.056 -4.129 27.439 hybrid contribution -1.887 2.049 -0.472 2.825 sum -3.837 -25.007 -4.600 25.715 Atomic orbital electron populations 1.23540 0.75291 1.05718 1.02169 1.86532 1.24513 1.32341 1.83092 1.25459 0.93857 0.81623 0.71107 1.90729 1.67585 1.37573 1.46858 1.20474 0.84066 0.91087 1.01237 0.82260 1.60660 1.55886 1.00999 1.10224 1.22120 1.02967 0.92098 0.91727 1.20943 0.77416 0.88967 0.83455 1.90681 1.50991 1.72544 1.31201 1.48049 1.66586 1.12239 1.06015 1.18793 0.94220 0.76308 0.96663 1.21774 0.93946 0.91972 1.50141 0.93279 1.25686 0.98628 0.99461 0.94894 1.70022 1.23096 1.12013 1.51242 0.85549 0.79753 0.78773 0.77820 1.19645 1.19654 1.21020 1.21528 0.96114 0.98555 0.85084 1.19840 1.00221 1.01422 0.86361 1.29162 0.91869 0.91924 0.94172 1.81282 1.10159 1.11990 1.13268 1.19266 1.01718 0.95225 0.92411 1.21263 0.96872 0.92956 1.00475 1.21466 0.99384 1.01104 0.92157 1.21514 0.98540 0.94448 0.99117 1.21337 0.99414 0.96147 0.98440 1.21046 0.99713 0.99249 0.93289 0.92722 0.84743 0.92076 0.82901 0.90988 0.83675 0.94502 0.97700 0.92549 0.89863 0.88023 0.84145 0.86052 0.83084 0.83108 0.83916 0.85309 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.35 -6.58 10.48 -51.34 -0.54 -7.11 16 3 C 0.44 9.97 7.07 71.23 0.50 10.47 16 4 O -0.54 -16.25 15.05 21.96 0.33 -15.92 16 5 C 0.14 2.78 2.70 43.42 0.12 2.90 16 6 H 0.16 1.92 7.66 -2.39 -0.02 1.90 16 7 N -0.65 -16.92 5.18 -503.39 -2.61 -19.52 16 8 C 0.04 1.04 4.41 85.55 0.38 1.41 16 9 C 0.50 18.62 7.71 87.65 0.68 19.30 16 10 O -0.58 -27.90 15.78 -3.05 -0.05 -27.95 16 11 N -0.60 -21.66 2.46 -826.16 -2.03 -23.68 16 12 C 0.26 12.74 5.16 85.63 0.44 13.18 16 13 C -0.54 -29.73 9.39 25.60 0.24 -29.49 16 14 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 15 C 0.01 0.70 5.46 84.65 0.46 1.17 16 16 N -0.92 -54.08 13.29 21.45 0.28 -53.79 16 17 Si 0.96 44.66 29.54 68.60 2.03 46.68 16 18 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 21 C 0.11 2.74 5.17 86.38 0.45 3.19 16 22 C -0.04 -0.65 6.03 28.79 0.17 -0.47 16 23 C 0.25 5.13 15.44 89.43 1.38 6.51 16 24 N -0.49 -13.14 18.54 20.01 0.37 -12.77 16 25 C -0.09 -1.66 4.88 -19.87 -0.10 -1.76 16 26 C -0.10 -1.39 9.67 22.27 0.22 -1.18 16 27 C -0.12 -1.59 10.05 22.27 0.22 -1.37 16 28 C -0.12 -1.74 10.05 22.27 0.22 -1.52 16 29 C -0.14 -2.58 10.05 22.27 0.22 -2.35 16 30 C -0.11 -2.61 9.32 22.27 0.21 -2.40 16 31 H 0.05 0.89 8.13 -2.39 -0.02 0.87 16 32 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 34 H 0.35 11.33 6.79 -89.70 -0.61 10.72 16 35 H 0.07 1.68 6.88 -2.39 -0.02 1.67 16 36 H 0.15 2.18 7.10 -2.39 -0.02 2.17 16 37 H 0.04 1.77 8.07 -2.39 -0.02 1.75 16 38 H 0.00 0.28 7.42 -2.39 -0.02 0.26 16 39 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 40 H 0.08 2.27 8.07 -2.39 -0.02 2.25 16 41 H 0.10 1.94 6.44 -2.38 -0.02 1.93 16 42 H 0.14 1.58 7.22 -2.39 -0.02 1.56 16 43 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.15 1.29 8.04 -2.91 -0.02 1.27 16 45 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 46 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 47 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 48 H 0.10 2.70 7.25 -2.91 -0.02 2.68 16 Total: -1.00 -81.62 418.52 5.19 -76.44 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.39 Total: 18.47 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 7.01 Total: 19.16 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -3.98 Total: -109.77 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -0.26 Total: -50.98 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -81.62 5.19 -76.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263900999.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.455 kcal (2) G-P(sol) polarization free energy of solvation -81.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds