Wall clock time and date at job start Tue Mar 31 2020 06:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35003 * 127.27122 * 2 1 4 4 C 1.39489 * 111.68397 * 179.97438 * 3 2 1 5 5 C 1.47686 * 122.10472 * 180.02562 * 4 3 2 6 6 O 1.21580 * 119.99955 * 316.07146 * 5 4 3 7 7 N 1.34777 * 119.99995 * 136.06499 * 5 4 3 8 8 C 1.46505 * 120.00033 * 185.41993 * 7 5 4 9 9 C 1.50701 * 109.46884 * 90.00531 * 8 7 5 10 10 H 1.08005 * 119.99829 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00043 * 179.97438 * 9 8 7 12 12 N 1.31508 * 119.99722 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99871 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47246 * 0.02562 * 13 11 9 15 15 H 1.48495 * 109.46635 * 120.00311 * 13 11 9 16 16 H 1.48502 * 109.46962 * 239.99954 * 13 11 9 17 17 C 1.46502 * 120.00130 * 5.42550 * 7 5 4 18 18 C 1.53004 * 109.46721 * 313.84340 * 17 7 5 19 19 C 1.52999 * 109.46864 * 179.97438 * 18 17 7 20 20 C 1.52999 * 109.47409 * 59.99803 * 19 18 17 21 21 C 1.53007 * 109.46999 * 300.00203 * 20 19 18 22 22 C 1.52992 * 109.47063 * 299.99613 * 21 20 19 23 23 C 1.53000 * 109.47280 * 59.99939 * 22 21 20 24 24 C 1.52994 * 109.47332 * 300.00188 * 23 22 21 25 25 C 1.52999 * 109.46901 * 59.99993 * 23 22 21 26 26 C 1.52993 * 109.47289 * 193.84077 * 17 7 5 27 27 N 1.30607 * 115.79029 * 0.02562 * 4 3 2 28 28 S 1.56144 * 109.79801 * 359.74093 * 27 4 3 29 29 H 1.09005 * 109.46270 * 90.00414 * 1 2 3 30 30 H 1.08994 * 109.47545 * 330.00460 * 1 2 3 31 31 H 1.08996 * 109.46882 * 209.99378 * 1 2 3 32 32 H 1.08005 * 124.15896 * 359.97438 * 3 2 1 33 33 H 1.08995 * 109.46776 * 210.00278 * 8 7 5 34 34 H 1.09001 * 109.47186 * 330.00635 * 8 7 5 35 35 H 0.97000 * 119.99894 * 179.97438 * 12 11 9 36 36 H 1.09000 * 109.47184 * 300.00016 * 18 17 7 37 37 H 1.09001 * 109.47061 * 59.99905 * 18 17 7 38 38 H 1.08996 * 109.47209 * 180.02562 * 19 18 17 39 39 H 1.08994 * 109.47816 * 179.97438 * 20 19 18 40 40 H 1.09009 * 109.46865 * 59.99711 * 20 19 18 41 41 H 1.09001 * 109.46791 * 179.97438 * 21 20 19 42 42 H 1.08997 * 109.47276 * 300.00036 * 22 21 20 43 43 H 1.08995 * 109.47392 * 179.97438 * 22 21 20 44 44 H 1.08999 * 109.47394 * 179.97438 * 23 22 21 45 45 H 1.09006 * 109.47448 * 179.97438 * 24 23 22 46 46 H 1.08998 * 109.47391 * 299.99669 * 24 23 22 47 47 H 1.09001 * 109.47251 * 179.97438 * 25 23 22 48 48 H 1.09005 * 109.47063 * 59.99847 * 25 23 22 49 49 H 1.08996 * 109.47365 * 300.00182 * 26 17 7 50 50 H 1.09000 * 109.46779 * 59.99884 * 26 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.0743 0.0000 4 6 3.6682 0.6995 0.0006 5 6 4.7604 1.6936 0.0013 6 8 4.6999 2.6637 -0.7291 7 7 5.8241 1.5255 0.8116 8 6 6.8493 2.5683 0.9005 9 6 6.4863 3.5374 1.9960 10 1 5.5822 3.3913 2.5684 11 6 7.3084 4.6104 2.2676 12 7 8.4096 4.7879 1.5709 13 14 6.8581 5.8121 3.6250 14 1 5.5803 5.3920 4.2542 15 1 7.9326 5.8265 4.6498 16 1 6.7037 7.1727 3.0505 17 6 5.9554 0.2999 1.6034 18 6 4.6187 -0.0176 2.2769 19 6 4.7556 -1.2979 3.1034 20 6 5.8318 -1.1020 4.1730 21 6 7.1684 -0.7844 3.4994 22 6 7.5655 -1.9432 2.5827 23 6 6.4892 -2.1392 1.5131 24 6 5.1527 -2.4567 2.1866 25 6 6.3524 -0.8589 0.6867 26 6 7.0315 0.4965 2.6730 27 7 3.8996 -0.5859 0.0005 28 16 2.5473 -1.3666 0.0064 29 1 -0.3632 -0.0001 -1.0278 30 1 -0.3634 0.8899 0.5137 31 1 -0.3633 -0.8900 0.5137 32 1 1.9807 2.0981 -0.0004 33 1 7.8135 2.1117 1.1241 34 1 6.9104 3.0997 -0.0492 35 1 8.9878 5.5430 1.7616 36 1 4.3356 0.8082 2.9297 37 1 3.8521 -0.1577 1.5149 38 1 3.8033 -1.5244 3.5829 39 1 5.9290 -2.0138 4.7621 40 1 5.5489 -0.2763 4.8261 41 1 7.9351 -0.6444 4.2615 42 1 7.6630 -2.8553 3.1715 43 1 8.5174 -1.7168 2.1025 44 1 6.7723 -2.9645 0.8597 45 1 4.3858 -2.5960 1.4246 46 1 5.2501 -3.3688 2.7754 47 1 5.5860 -0.9987 -0.0757 48 1 7.3047 -0.6327 0.2068 49 1 7.9836 0.7227 2.1932 50 1 6.7483 1.3222 3.3257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277898177.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:51 Heat of formation + Delta-G solvation = 46.091429 kcal Electronic energy + Delta-G solvation = -33369.668766 eV Core-core repulsion = 29489.628728 eV Total energy + Delta-G solvation = -3880.040037 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.93948 -39.78848 -37.85837 -35.14715 -33.70256 -32.60584 -32.31038 -32.07372 -30.02501 -28.31222 -27.79620 -25.69855 -25.39434 -24.99709 -22.58421 -21.53774 -21.17430 -20.94493 -20.33806 -18.62682 -17.94772 -17.51287 -16.47995 -16.43699 -15.76572 -15.11614 -14.65041 -14.21753 -14.16622 -14.08565 -13.92373 -13.84129 -13.76849 -13.32680 -13.07100 -13.04577 -12.81022 -12.66713 -12.65892 -12.47231 -12.22710 -11.98033 -11.86713 -11.24293 -11.04480 -11.00556 -10.91976 -10.75556 -10.64114 -10.49357 -10.41909 -10.29913 -10.20327 -9.99514 -9.75190 -9.53366 -9.31912 -9.25137 -9.16168 -8.78215 -8.50068 -8.40363 -7.59080 -6.03124 -4.06858 0.68770 1.44831 1.89146 2.15015 3.29554 3.37084 3.39897 3.54079 3.93136 4.44014 4.56443 4.78983 4.83291 4.86526 5.02243 5.18449 5.22209 5.30840 5.31691 5.37778 5.42659 5.51962 5.55110 5.58250 5.63990 5.66358 5.68799 5.74705 5.80056 5.83760 5.90390 5.97074 6.07145 6.09339 6.21596 6.23544 6.29493 6.37945 6.44216 6.45669 6.55925 6.60698 6.64216 6.65620 6.89800 6.96292 7.11409 7.16021 7.47191 7.57324 7.93300 8.24264 8.41433 8.86176 9.03269 9.57105 11.04852 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.009721 B = 0.005279 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.618665 B = 5302.985216 C = 6966.820941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.242 4.242 3 C -0.146 4.146 4 C 0.080 3.920 5 C 0.578 3.422 6 O -0.530 6.530 7 N -0.569 5.569 8 C 0.242 3.758 9 C -0.519 4.519 10 H 0.057 0.943 11 C 0.063 3.937 12 N -0.893 5.893 13 Si 0.894 3.106 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.191 3.809 18 C -0.162 4.162 19 C -0.076 4.076 20 C -0.107 4.107 21 C -0.083 4.083 22 C -0.108 4.108 23 C -0.075 4.075 24 C -0.100 4.100 25 C -0.139 4.139 26 C -0.109 4.109 27 N -0.487 5.487 28 S 0.401 5.599 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.166 0.834 33 H 0.041 0.959 34 H 0.044 0.956 35 H 0.262 0.738 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.114 0.886 48 H 0.053 0.947 49 H 0.071 0.929 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.791 -17.808 1.148 21.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.373 4.373 3 C -0.179 4.179 4 C -0.093 4.093 5 C 0.359 3.641 6 O -0.406 6.406 7 N -0.298 5.298 8 C 0.124 3.876 9 C -0.558 4.558 10 H 0.075 0.925 11 C -0.139 4.139 12 N -0.532 5.532 13 Si 0.722 3.278 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 C 0.106 3.894 18 C -0.201 4.201 19 C -0.095 4.095 20 C -0.145 4.145 21 C -0.102 4.102 22 C -0.146 4.146 23 C -0.094 4.094 24 C -0.138 4.138 25 C -0.179 4.179 26 C -0.146 4.146 27 N -0.319 5.319 28 S 0.559 5.441 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.184 0.816 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.131 0.869 48 H 0.071 0.929 49 H 0.090 0.910 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.903 -19.132 0.720 22.033 hybrid contribution -0.366 2.771 0.923 2.943 sum -11.270 -16.362 1.644 19.935 Atomic orbital electron populations 1.20187 0.86446 1.03456 1.03013 1.25971 1.02942 0.99971 1.08386 1.21255 0.90272 1.01776 1.04570 1.21215 0.95793 0.89748 1.02545 1.17145 0.81408 0.83968 0.81629 1.90787 1.78168 1.30426 1.41236 1.48280 1.22248 1.19070 1.40166 1.19416 0.85338 0.84431 0.98440 1.21401 1.07863 1.09288 1.17244 0.92464 1.24895 0.94964 0.97465 0.96584 1.69938 1.12828 1.30195 1.40207 0.86506 0.78352 0.81213 0.81768 1.19841 1.20994 1.20907 1.20031 0.95026 0.83749 0.90579 1.23096 0.99498 0.97156 1.00348 1.20946 0.97783 0.95144 0.95620 1.21555 0.95083 1.00742 0.97106 1.21078 0.96789 0.95215 0.97150 1.21575 0.98285 0.97741 0.97003 1.20935 0.94805 0.97454 0.96222 1.21499 0.97110 0.97045 0.98121 1.22601 1.02595 0.93391 0.99333 1.21806 0.98722 0.96963 0.97153 1.73448 1.24553 1.10579 1.23351 1.80618 0.89554 1.14133 1.59810 0.90353 0.90371 0.90904 0.81631 0.94137 0.93841 0.92808 0.92300 0.88562 0.92047 0.92593 0.92107 0.91383 0.92642 0.92136 0.91887 0.92389 0.92688 0.86873 0.92875 0.91025 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.46 36.01 0.38 -0.16 16 2 C -0.24 -2.72 6.58 -35.46 -0.23 -2.95 16 3 C -0.15 -2.16 10.10 -40.27 -0.41 -2.57 16 4 C 0.08 1.40 4.02 -84.06 -0.34 1.06 16 5 C 0.58 12.89 7.11 -12.40 -0.09 12.80 16 6 O -0.53 -13.77 16.58 5.30 0.09 -13.68 16 7 N -0.57 -12.67 2.40 -161.33 -0.39 -13.06 16 8 C 0.24 6.37 4.57 -5.19 -0.02 6.34 16 9 C -0.52 -14.46 8.18 -34.44 -0.28 -14.74 16 10 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 13 Si 0.89 21.78 29.54 -169.99 -5.02 16.75 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 C 0.19 3.50 0.74 -131.82 -0.10 3.40 16 18 C -0.16 -2.67 3.73 -26.73 -0.10 -2.77 16 19 C -0.08 -1.02 3.19 -90.62 -0.29 -1.31 16 20 C -0.11 -1.44 5.19 -26.73 -0.14 -1.58 16 21 C -0.08 -1.22 3.20 -90.59 -0.29 -1.51 16 22 C -0.11 -1.43 5.19 -26.74 -0.14 -1.57 16 23 C -0.08 -1.01 3.19 -90.62 -0.29 -1.30 16 24 C -0.10 -1.22 5.00 -26.73 -0.13 -1.36 16 25 C -0.14 -2.29 4.34 -26.73 -0.12 -2.41 16 26 C -0.11 -2.01 3.47 -26.71 -0.09 -2.11 16 27 N -0.49 -7.28 3.99 21.53 0.09 -7.20 16 28 S 0.40 4.40 21.06 -107.50 -2.26 2.13 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.17 2.42 8.06 -52.48 -0.42 2.00 16 33 H 0.04 1.08 6.04 -51.93 -0.31 0.77 16 34 H 0.04 1.30 7.35 -51.93 -0.38 0.91 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.10 1.51 1.79 -102.74 -0.18 1.33 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.68 5.94 -51.93 -0.31 0.37 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.11 1.91 4.46 -61.35 -0.27 1.63 16 48 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.07 1.44 6.46 -51.93 -0.34 1.11 16 50 H 0.08 1.78 7.06 -51.93 -0.37 1.41 16 LS Contribution 371.05 15.07 5.59 5.59 Total: -1.00 -31.78 371.05 -11.58 -43.35 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.63 Total: 2.69 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.78 Total: -11.05 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.43 Total: -45.80 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.09 Total: -13.68 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -2.26 Total: 2.13 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.78 -11.58 -43.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277898177.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.445 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds